Effect of Cysteic Acid Position on the Negative Ion Fragmentation of Proteolytic Derived Peptides

A study on the effect of cysteic acid position on the types of fragment ions formed by collision-induced dissociation (CID) of [M – H]⁻ ions is presented. Of particular note is the observation of d-type fragment ions for peptides that contain an N-terminal cysteic acid (fixed negative charge) and cleavable amino acid side chains possessing a β-γ carbon–carbon bond. For example, the CID mass spectrum of oxidized cys-kemptide (C_oxLRRASLG) [M – H + O₃]⁻ ions contains abundant series of d-type fragment ions, and similar results are observed for oxidized cysteine-containing ribonuclease A proteolytic peptides. The d _i fragment ions are assumed to arise by a charge-remote and/or charge-assisted fragmentation mechanism, which both occur at high collision energies and involve consecutive reactions (i.e., the formation of a _i ions followed by the elimination of the side chain to form d _i ions).     

η3-Propargyl complexes of molybdenum, tungsten, and rhenium

The reactions of the Me _n C₆H_6−n M(CO)₃ (M=Cr, Mo, W;n=3, 5, 6) and C₅R₅M(CO)₃ (M=Mn, Re; R=H, Me) complexes with propargyl alcohol in acidic media under UV irradiation were studied. Novel Me _n C₆H_6−n M(CO)₂(η³-C₃H₃)BF₄ (M=Mo, W;n=3, 5, 6) and C₅R₅Re(CO)₂(η³-C₃H₃)CF₃SO₃ complexes with the 3ē-propargyl ligand were synthesized, and their properties compared with those of similar η³-allyl derivatives. The structure and dynamic propeties of the compounds obtained are discussed. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1796–1803, September, 1999.     

Differential kinetic thermal lens determination of aniline and 4-nitroaniline

Thermal lens spectrometry was used for the differential kinetic determination of aniline (over the concentration range of 8 × 10⁻⁴–3.2 × 10⁻³ M) and 4-nitroaniline (2 × 10⁻⁴–1.6 × 10⁻³ M) present in combination in a single sample based on the oxidation reaction with periodate ions in an acidic medium (this determination is not possible with the spectrophotometric monitoring of the rate of reaction). The thermal lens procedure (λ_e = 488.0 nm; 80 mW) was characterized by good performance characteristics in the determination of aniline (c _min = 3 × 10⁻⁴ M; c _d = 8 × 10⁻⁴ M) and 4-nitroaniline (c _min = 7 × 10⁻⁵ M; c _d = 2 × 10⁻⁴ M), simplicity, and rapidity.     

Mass Spectrometric Determination of Association Constants of Bovine Serum Albumin (BSA) with para-Sulphonato-Calix[n]arene Derivatives

Electrospray Ionization Mass Spectrometry (ESI/MS) has been used to determine the association constants (K_As) and binding stoichiometries for parent para-Sulphonato-calix[n]arenes and their derivatives with bovine serum albumin (BSA). K_A values were determined by titration experiments using a constant concentration of protein. K_A measurements were carried out in a methanol–formic acid solution. 5,11,17,23–tetra-Sulphonato-calix[4]arene (1a) and 25-mono-(2-aminoethoxy)-5,11,17,23-tetra-Sulphonato-calix[4]arene (1d) interact strongly with BSA showing 3 non-equivalent binding sites with K_A1 = 7.69 × 10⁵ M⁻¹, K_A2 = 3.85 × 10⁵ M⁻¹, K_A3 = 0.33 × 10⁵ M⁻¹ and K_A1 = 1.69 × 10⁵ M⁻¹, K_A2 = 2.94 × 10⁵ M⁻¹, K_A3 = 0.60 × 10⁵ M⁻¹, respectively. The strength of the interactions between the calixarene and BSA is inversely proportional to the size of macrocyclic ring: n = 4 > n=6>>n=8.     

Spectral and electrochemical study of coordination molecules Cu4OX6L4: 3-Pyridylmethanol and 4-pyridylmethanol Cu4OBrnCl(6−n)(pm)4 complexes

The tetranuclear Cu₄OBr_nCl_(6−n)(pm)₄ complexes, where pm = 3-pyridylmethanol (3-pm), 4-pyridylmethanol (4-pm) and n = 0−6 with trigonal bipyramidal coordination of copper(II) were prepared and their infrared and electronic absorption spectra as well as cyclic voltammograms in nitromethane solutions were measured. The molecules exhibit strong single infrared Cu₄O stretching absorptions between 580 and 530 cm⁻¹ which are in linear correlations with the number of halides, n. Far infrared absorptions assigned to Cu-Br, Cu-Cl, and Cu-N stretching vibrations appear at higher wavenumbers for 3-pm complexes compared with those for 4-pm complex molecules. Two strongly overlapped d–d bands in the region 11300–13100 cm⁻¹ assigned to and e(d _xz, d _yz) → a ₁(d _z ²) transitions in the trigonal bipyramidal coordination of the copper(II) atoms were resolved by Gaussian analysis. Both, 3-pm and 4-pm ligands produce in the complex molecules almost the same ligand field. The maxima of the Gaussian d–d components vary with the parameter n and are for both series of the complexes deviated from linearity, more for the low-energy d–d bands than for high-energy analogues. The electrochemical reduction in nitromethane is significantly less reversible for 4-pm complex molecules compared with that of 3-pm analogues. Formal reduction potentials E′ _c for 3-pm complexes were observed in the range 478 (n = 0)−599 (n = 6) mV. The plot E′ _c vs. n is significantly deviated from linearity. It is suggested that the reducing electrons enter the half-filled d _z ² orbital of the copper(II) atom. The different spectral and electrochemical results obtained for 3-and 4-pm complexes are explained by different structural distortions, bond lengths, and charge distributions produced by halide ligand variations. The results are also discussed with previously reported data on analogous pyridine, 3-methylpyridine and 4-methylpyridine complexes.     

Theoretical and experimental study of the structure and stability of multiply Na-substituted glucose and 2,4,6-trihydroxyacetophenone derivatives

The equilibrium geometric parameters and the energetic and spectroscopic characteristics of low lying conformers for series of polyhydroxyl molecules and ions in which sodium atoms are successively substituted for the hydroxyl hydrogen atoms have been calculated by the density functional theory B3LYP method with the 6−31G* and 6−311+G** basis sets. The glucose derivatives [Glu − nH + nNa] and [Glu − nH + (n + 1)Na]⁺ (n = 1−5) and the 2,4,6-trihydroxyacetophenone derivatives [THAP − nH + nNa] and [THAP − nH + (n + 1)Na]⁺ (n = 1−4) have been considered. The affinities of the neutral [Glu − nH + nNa] and [THAP − nH + nNa] molecules for adding Na⁺ cations, as well as the energies of successive substitution of Na atoms for H atoms in the Glu and THAP molecules and the Glu⁺ and THAP⁺ ions in their reaction with sodium acetate molecules, have been estimated. Computations show that the first substitution of Na for H in ions is slightly exothermic and, presumably, can spontaneously occur under common conditions. Further substitutions are endothermic, but the required energy inputs are small. Therefore, successive substitutions for two, three, or more hydroxyl H atoms in the molecules and ions under consideration are possible at relatively low energy inputs. The computation results and conclusions are compared with the MALDI TOF mass spectral data for Na-substituted glucose and 2,4,6-trihydroxyacetophenone derivatives in the [glucose + CH₃COONa + THAP] system where, in addition to common Glu · Na⁺ and THAP · Na⁺ ion-molecular complexes, multiply substituted positive ions of the [Glu − nH + (n + 1)Na]⁺ (n = 1−4) and [THAP − nH + (n + 1)Na]⁺ (n = 1−3) type have been identified.     

A quartz crystal microbalance study of β-cyclodextrin self assembly on gold and complexation of immobilized β-cyclodextrin with adamantane derivatives

Quartz crystal microbalance (QCM) was used to study the self-assembly of per-6-thio-β-cyclodextrin (t₇-βCD) on gold surfaces, and the subsequent inclusion interactions of immobilized βCD with adamantane-poly(ethylene glycol) (5,000 MW, AD-PEG), 1-adamantanecarboxylic acid (AD-C) and 1-adamantylamine (AD-A). From a 50 μM solution of t₇-βCD in 60:40 DMSO:H₂O, a t₇-βCD layer was formed on gold with surface density of 71.7 ± 2.7 pmol/cm², corresponding to 80 ± 3% of close-packed monolayer coverage. Gold sensors with immobilized t₇-βCD were then exposed alternately to six different concentrations of AD-PEG, 500 μM AD-C or 500 μM AD-A aqueous solutions for association, and water for dissociation. Association of AD-PEG conformed to a Langmuir isotherm, with a best fit equilibrium constant K = 125,000 ± 18,000 M⁻¹. For AD-C and AD-A, association (k _a ) and dissociation (k _d ) rate constants were extracted from kinetic profiles by fitting to the Langmuir model, and equilibrium constants were calculated. The parameters for AD-C were found to be: k _a = 100 ± 5 M⁻¹ s⁻¹, k _d = 110 (±18) × 10⁻⁴ s⁻¹, and K = 9,400 ± 1,700 M⁻¹. For AD-A, k _a = 58 ± 6 M⁻¹ s⁻¹, k _d = 154 (±7) × 10⁻⁴ s⁻¹, and K = 3,800 ± 400 M⁻¹. The results demonstrate the utility of QCM as a tool for studying small molecule surface adsorption and guest–host interactions on surfaces. More specifically, the kinetic and thermodynamic data of AD-C, AD-A, and AD-PEG inclusion with immobilized t₇-βCD form a basis for further surface association studies of AD-X conjugates to advance surface sensory and coupling applications.     

Processes of dissociative electron capture by 20-hydroxyecdysone molecules

The peculiarities of dissociative electron capture by 20-hydroxyecdysone molecules with the formation of fragment negative ions were studied. In the region of high electron energies (5–10 eV), processes of skeleton bond rupture are accompanied by the elimination of H₂O and H₂ molecules. In the region of thermal energies of electrons (≈0 eV), the mass spectrum is formed mainly by the [M−nH₂O]^.− (n=1–3) and [M−H₂−nH₂O]^.− (n=0−3) ions that are generated exclusively by the rearrangement. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 709–712, April, 2000.     

Complexes of Co(II), Ni(II), and Cu(II) chlorides and bromides with tetrazol-1-yl-tris(hydroxymethyl)methane: Synthesis and structure

The reactions of Co(II), Ni(II), and Cu(II) chlorides and bromides and their metallic powders with tetrazol-1-yl-tris(hydroxymethyl)methane (L) afforded new complexes ML₂Hal₂ · mH₂O(M = Co(II) or Ni(II), Hal = Cl⁻; M = Cu(II), Hal = Cl⁻ or Br⁻, m = 0; and M = Co(II) or Ni(II), Hal = Br⁻, m = 2), MLnCl₂ (M = Co(II) or Ni(II), n = 2 or 4; M = Cu(II), n = 2), and MLnBr₂ · mH₂O (M = Ni(II), n = 2, m = 2; M = Cu(II), n = 2, m = 0). The compositions and structures of the synthesized complexes were determined by elemental analysis, IR spectroscopy (50–4000 cm⁻¹), and X-ray diffraction analysis. The introduction of a bulky substituent into position 1 of the tetrazole cycle was shown to exert almost no effect on the coordination mode but affected the composition and structure of the complexes.     

Adsorption of Cu(II), Cd(II), Pb(II), Cr(VI) by double hydroxides on the basis of Al oxide and Zr, Sn, and Ti oxides

It was studied the equilibrium adsorption and adsorption kinetics of Cu(II), Cd(II), Pb(II), and Cr(VI) by composite hydroxides formed by Me _x O _y · nH₂O and Me_0.4–0.7Al_0.6–0.3O _y · nH₂O, where Me = Zr, Sn and Ti. It was estimated the values of the diffusion coefficients of adsorbed ions Cu(II) and Cr(VI) from kinetic values. It was established that the estimated diffusion coefficients of adsorbed ions Cu(II) are in the range 0.4 × 10⁻¹²–2.5 × 10⁻¹² m²/s for individual hydroxides and 1.2 × 10⁻¹²–2.8 × 10⁻¹² m²/s for double hydroxides. The obtained values of diffusion coefficients Cr (VI) for double hydroxides are 0.1 × 10⁻¹⁰–0.4 × 10⁻¹⁰ m²/s.     

Synthesis,structure and properties of complex compounds of cobalt,nickel, copper and zinc with 2-formylpyridine semicarbazone

2-Formylpyridine semicarbazone L reacts with cobalt, nickel, copper and zinc chlorides, nitrates and perchlorites to form coordination compounds of compositions ML₂X₂·nH₂O (M=Co, Ni, Cu, Zn; X = Cl, NO₃, ClO₄; L = NC₅H₄-CH=N-NH-C(O)-NH₂; n = 0, 1) and CuLX₂·nH₂O (X = Cl, Br, NO₃; n = 0−0.5). Complex CuL(NO₃)₂ has polynuclear, CuLX₂·0.5H₂O (X = Cl, Br), binuclear, and other compounds, mononuclear structures. Azomethine L behaves in them as tridental N,N,O-ligand. Thermolysis of these complexes proceeds through such stages as dehydration (80–95°C), deactivation (145–155°C) and complete theral degradation (170–590°C). Complexes CuLX₂·nH₂O (X = Cl, NO₃; n = 0−0.5) were established to inhibit in vitro the growth and reproduction of 100% of cancer cells of human mieloid leukaemia HL-60 at 10⁻⁴ M concentration. At 10⁻⁵ M concentration they inhibit only 10% of cells, and at 10⁻⁶ M concentration they do not possess anticancer activity.     

Fragmentation of sputtered vanadium and niobium cluster ions,kinetic release and dissociation energy

The generation and unimolecular fragmentation of V _n ⁺ and Nb _n ⁺ clusters formed in sputtering vanadium and niobium surfaces by Xe⁺ ions has been studied. The method of measuring the kinetic energy of fragment ions (kinetic energy release distribution) has been used to determine the dissociation energy. Kinetic energy spectra have been measured in the field-free zone (corresponding to a time window of 10⁻⁵–10⁻⁴ sec after emission) of an ion microanalyzer with double focusing in reverse geometry. The results of spectra measurement were treated using the Rice-Ramsperge-Kassel theory of unimolecular reactions and the “evaporative ensemble”, which allowed us to calculate the dissociation energies of homonuclear V _n ¹ (n= 5–11) and Nb _n ¹ (n = 3–8) clusters.     

Regularities of photostimulated conversions in nanometer aluminum layers

The gravimetric and optical spectroscopic methods reveals that light irradiation with λ = 300–750 nm and intensity I = 6.9 × 10¹⁴–1.1 × 10¹⁶ quanta cm⁻² s⁻¹ for τ = 1–160 min in atmospheric conditions significantly changes the absorption and reflection spectra and mass of aluminum films (d = 2–200 nm). The kinetic curves of the degree of conversion versus aluminum film thickness are satisfactorily described in the inverse logarithmic and parabolic terms. The contact potential difference is measured for Al and Al₂O₃ films along with the photo-EMF of Al-Al₂O₃ systems. The suggested model includes the stages of generation and redistribution of nonequilibrium charge carriers in the contact field of Al-Al₂O₃ systems, oxygen adsorption, Al³⁺ diffusion, and Al₂O₃ formation.     

2-(5-Benzoacridine)ethyl-p-toluenesulfonate as sensitive reagent for the determination of bile acids by HPLC with fluorescence detection and online atmospheric chemical ionization-mass spectrometric identification

2-(5-Benzoacridine)ethyl-p-toluenesulfonate (BAETS), a dual-sensitive probe, was reacted with bile acids in the presence of K₂CO₃ catalyst in dimethyl sulfoxide (DMSO) solvent to give BAETS–bile acid derivatives. Derivatives exhibited intense fluorescence (FL) with an excitation maximum at λ _ex 270 nm and an emission maximum at λ _em 510 nm. MS analysis using APCI-MS indicated that derivatives had excellent APCI-MS ionizability with percentage ionization δ values changing from 0 to 88.83% in aqueous acetonitrile and from 0 to 89.15% in aqueous methanol. The collision induced dissociation spectra of m/z [M + H]⁺ contained specific fragment ions at m/z [M + H−H₂O]⁺, [M + H−2H₂O]⁺, [M + H−3H₂O]⁺, 347.3, and 290.1. Repeatability was good for LC separation of BAETS–bile acid derivatives with aqueous acetonitrile as mobile phase. The relative standard deviations (RSDs) of retention time and peak area at 6.6 nmol mL⁻¹ levels with fluorescence detection (FL) were from 0.045 to 0.072% and from 2.16 to 2.73%, respectively. Excellent linear responses were observed, with regression coefficients >0.9995. The FL detection limits (S/N = 3) were in the range of 18.0–36.1 fmol. The online APCI-MS detection limits are in the range of 500–790 fmol (at a signal-to-noise ratio of 3).     

Effects of Temperature and Common Ions on Binding of Puerarin to BSA

The effects of temperature and common ions on binding of puerarin to bovine serum albumin (BSA) are investigated. The binding constants (K _a) between puerarin and BSA are 1.13×10⁴ L⋅mol⁻¹ (20 °C) and 1.54×10⁴ L⋅mol⁻¹ (30 °C), and the number of binding sites (n) is (0.95±0.02). However, at a higher temperature (40 °C) the stability of the puerarin–BSA system decreases, which results in a lower binding constant (1.58×10³ L⋅mol⁻¹) and number of binding sites (n=0.73) of the puerarin–BSA system. However, the presence of Cu²⁺ and Fe³⁺ ions increases the binding constants and the number of binding sites in the puerarin–BSA complex.     

Indo parameters for the first-and second-row transition metals

A system of INDO parameters F⁰(ij) and U_ii for the first-and second-row transition metals is proposed. The system correctly reproduces the energies of the lowest terms of dⁿ, dⁿ⁻¹s, dⁿ⁻²s², dⁿ⁻¹p, and dⁿ⁻²sp configurations of M⁰ atoms and M¹⁺ ions. The parameters are estimated from spectroscopic values of energies of the terms and F^k(ij) and G^k(ij) parameters. St. Petersburg State University. Translated fromZhurnal Strukturnoi Khimii, Vol. 35, No. 4, pp. 3–11, July–August, 1994. Translated by O. Kharlamova     

Role of mononuclear rare earth metal complexes in promoting the hydrolysis of p-nitrophenyl phosphate (NPP)

Two long-chain multidentate ligands: 2,9-di-(n-2′,5′,8′-triazanonyl)-1,10-phenanthroline (L₁) and 2,9-di-(n-4′,7′,10′-triazaundecyl)-1,10-phenanthroline (L₂) were synthesized. The hydrolytic kinetics of p-nitrophenyl phosphate (NPP) catalyzed by complexes of L₁ and L₂ with La(III) and Gd(III) have been studied in aqueous solution at 298 K, I = 0.10 mol · dm⁻³ KNO₃ at pH 7.5–9.1, respectively. The study shows that the catalytic effect of GdL1 was the best in the four complexes for hydrolysis of NPP. Its k_LnLH−1, k _LnL and pK _a are 0.0127 mol⁻¹ dm³ s⁻¹, 0.000022 mol⁻¹ dm³ s⁻¹ and 8.90, respectively. This paper expounds the result from the structure of the ligands and the properties of the metal ions, and deduces the catalysis mechanism.     

Synthesis and crystal and molecular structures of six-coordinate tin dibromides and diiodides containing lactamomethyl C,O-chelating ligands

New (O−Sn)-bischelate bis(lactamomethyl)dibromo- and-diiodostannanes [L⁽ⁿ⁾]₂SnX₂ (L is the bidentate lactamomethyl C,O-chelating ligand;n is the size of the lactam ring, 5–7; X=Br or I) were prepared both by the direct method from metallic tin and the correspondingN-(halomethyl)lactams and by the reactions of dichlorides [L⁽ⁿ )]₂SnCl₂ with lithium halides. According to the data of X-ray diffraction analysis, the tin atom in [L⁽ⁿ⁾]₂SnBr₂ (n=5–7) and [L⁽ⁿ⁾]₂SnI₂ (n=5 or 6) adopts an octahedral configuration with the carbon atoms intrans positions and the coordinating oxygen and halogen atoms incis-positions with respect to each other. A comparison with the structures of analogous lactamomethyl halide derivatives of five-and six-coordinate Si, Ge, and Sn demonstrates that the spatial structures of the hypervalent fragments containing six-coordinate atoms are less sensitive to the replacement of the halide ligands and the central atom. The covalence of the M−Hal bond increases and the covalence of the M−O bond decreases in the series M=Si, Ge, and Sn. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 1988–1998, October, 1999.     

Quantum-chemical study of the stereoelectronic structure of 1-fluorosilatrane, 1,1-difluoroquasisilatrane, 1,1,1-trifluorohyposilatrane,and cations formed thereof

Quantum-chemical study of the electronic structure and the equilibrium geometry of the molecules X_4−n M(OCH₂CH₂) _n NH_3−n and cations X_3−n [M(OCH₂CH₂) _n NH_3−n ]⁺ (M = Si, Ge; X = F, H; n = 1–3) is performed by the B3LYP method using the cc-PVDZ basis set. It is shown that for X = F the strength of the coordination bond N→M increases with the number of the cycles (n), while for X = H, on the contrary, decreases, that is, the strength of the N→M bond increases with the total electronegativity of the substituents surrounding atom M. Effect of the number of the coordination cycles on the strength of the N→M bond in the cations is negligible. The obtained results agree with the experimental data on the structure and spectral properties of the studied compounds.     

Toward total structural analysis of cardiolipins: multiple-stage linear ion-trap mass spectrometry on the [M − 2H + 3Li]<Superscript>+</Superscript> ions

ESI multiple-stage linear ion-trap (LIT) mass spectrometric approaches for a near-complete structural characterization of cardiolipins (CLs), including identification of the fatty acyl substituents, assignment of the fatty acid substituents on the glycerol backbone, and location of the double-bond(s) or cyclopropyl group along the fatty acid chain are described. Upon collisionally activated dissociation (CAD) on the [M − 2H + 3Li]⁺ ions of CL in an ion-trap (MS²), two sets of fragment ions (designated as (a + 136) and (b + 136) ions) analogous to those previously reported for the [M − 2H + 3Na]⁺ ions were observed, leading to assignment of the phosphatidyl moieties attached to 1′- or 3′-position of the central glycerol. Further dissociation of the (a + 136) (or (b + 136)) ions (MS³) gives rise to the (a + 136 − R_{1(or 2)}CO₂Li) (or b + 136 − R_{1(or 2)}CO₂Li) ion pairs that identify the fatty acid moieties and their position on the glycerol backbone. This is followed by MS⁴ on the (a + 136 − R_{1(or 2)}CO₂Li) (or b + 136 − R_{1(or 2)}CO₂Li) ion to eliminate a tricylic glycerophosphate ester residue (136 Da) to yield the (a − R_{1(or 2)}CO₂Li) ion, which is then subjected to MS⁵. The MS5 spectrum contains the structural information that locates the double-bond(s) or cyclopropyl group of the fatty acid substituents. Finally, the subsequent MS⁶ on the dilithiated fatty acid ions generated from MS⁵ also yields feature ions that confirm the assignment.