Synthesis and structure of triphenylbismuth bis(1-adamantanecarboxylate)

Triphenylbismuth bis(1-adamantanecarboxylate) was synthesized by reacting triphenylbismuth with 1-adamantanecarboxylic acid in the presence of hydrogen peroxide. In the complex, the coordination sphere of a bismuth atom is a trigonal bipyramid with C(Ph) atoms in the equatorial plane and O atoms in the apical positions. The Bi-C bond lengths are 2.213(4) Å (two bonds) and 2.222(5) Å; two Bi-O bond lengths are 2.306(3) Å. The Bi…O(=C) donor-acceptor interactions (2.716(3) Å) occur in the molecule. The equatorial CBiC angle on the side of the Bi…O(=C) contact is 157.1(2)°.     

Synthesis and structure of triphenylbismuth bis(phenylcarboranylcarboxylate)

Triphenylbismuth bis(phenylcarboranylcarboxylate) was synthesized by the reaction of triphenylbismuth with phenylcarboranylcarboxylic acid in the presence of hydrogen peroxide. The bismuth atom has a distorted trigonal-bipyramidal coordination with phenyl ligands in equatorial positions. Bond lengths: Bi-C 2.195(3), 2.196(3), 2.204(3) Å, Bi-O 2.266(2), 2.276 Å. In the molecule there are the donor-acceptor interaction of Bi...O(=C) 2.980(2) and 3.130(3) Å. The value of the equatorial angle CBiC from the side of the Bi...O(=C) contact is 141.4(1)°, the angle OBiO is 168.2(1).     

Structures of triphenylbismuth dicarboxylates

Tripheylbismuth bis(trichloroacetate) (I), triphenylbismuth bis(chloroacetate) (II), and triphenylbismuth bis(bromoacetate) (III) were synthesized by the reaction of triphenylbismuth with carboxylic acid. The Bi atoms of the synthesized compounds have a distorted trigonal-bipyramidal coordination with phenyl ligands in equatorial positions. The Bi-C bond lengths lie within intervals 2.194(2)–2.201(2), 2.193(8)–2.223(7), 2.191(4)–2.220(3) Å, the distances Bi-O and Bi···O(=C) are equal 2.308(2), 2.315(2), and 2.896(2), 2.931(2); 2.289(6), 2.302(6), and 2.891(6), 2.910(6); 2.295(3), 2.312(3), and 2.893(3), 2.920(3) Å in I, II, and III, respectively. Molecules of triphenylbismuth dicarboxylates show linear dependence between the maximum equatorial angle CBiC (on the side of a contact) and intramolecular distance Bi···O(=C).     

Synthesis and structure of triphenylbismuth bis(pentachlorobenzoate)

Triphenylbismuth bis(pentachlorobenzoate) has been synthesized by the reaction between triphenylbismuth and pentachlorobenzoic acid in the presence of hydrogen peroxide in ether. According to X-ray diffraction data, the bismuth atoms in two crystallographically independent molecules (A and B) have a distorted trigonal bipyramidal coordination. The OBiO and CBiC angles between axial and equatorial substituents are 171.7(3)°, 173.6(3)°, and 105.3(4)°–146.9(4)°. The Bi-O and Bi-C bond lengths are 2.291(8)–2.315(8) and 2.197(11)–2.204(10) Å, respectively. The Bi…O(=C) distances are 2.843(10)–2.857(11) Å.     

Hydro­gen‐bonded adducts of ferrocene‐1,1′‐diyl­bis­(di­phenyl­methanol): a finite cyclic 1:1 adduct with 2,2′‐dipyridyl­amine

In ferrocene‐1,1′‐diyl­bis­(di­phenyl­methanol)–2,2′‐dipyridyl­amine (1/1), [Fe(C₁₈H₁₅O)₂]·C₁₀H₉N₃, (I), there is an intramolecular O—H?O hydrogen bond [H?O 2.03 Å, O?O 2.775 (2) Å and O—H?O 147°] in the ferrocenediol component, and the two neutral molecular components are linked by one O—H?N hydrogen bond [H?N 1.96 Å, O?N 2.755 (2) Å and O—H?N, 157°] and one N—H?O hydrogen bond [H?O 2.26 Å, N?O 3.112 (2) Å and N—H?O 164°] forming a cyclic R(8) motif. One of the pyridyl N atoms plays no part in the intermolecular hydrogen bonding, but participates in a short intramolecular C—H?N contact [H?N 2.31 Å, C?N 2.922 (2) Å and C—H?N 122°].     

Phthal­imide at 120 K: perforated molecular ribbons containing three different ring motifs

Molecules of phthal­imide [1H‐iso­indole‐1,3(2H)‐dione], C₈H₅NO₂, are linked by N—H?O hydrogen bonds [H?O 2.02 Å, N?O 2.8781 (16) Å and N—H?O 167°] and by C—H?O hydrogen bonds [H?O 2.54 and 2.56 Å, C?O 3.3874 (18) and 3.4628 (19) Å, and C—H?O 149 and 159°] into molecular ribbons, which are pierced by three different ring motifs; there are two centrosymmetric R(8) rings, each containing a single hydrogen bond, N—H?O in one case and C—H?O in the other, and R(9) rings containing all three hydrogen bonds.     

Estimates for systematic empirical corrections of consistent 4–21G ab initio geometries and their correlations to total energy group increments

The structural parameters of the completely relaxed 4–21G ab initio geometries of more than 30 basic organic compounds are compared to experimental results. Some ranges for systematic empirical corrections, which relate 4–21G bond distances to experimental parameters, are associated with total energy increments. In general, for the currently feasible comparisons, the following corrections can be given which relate calculated distances to experimental r_g parameters and calculated angles to r_s-structures For CC single bond distances, deviations between calculated and observed parameters (r_g) are in the ranges of ?0.006(2) to ?0.010(2) Å for normal or unstrained hydrocarbons; ?0.011(3) to ?0.016(3) Å for cyclobutane type compounds; and +0.001(5) to +0.004(4) Å for CH₃ conjugated with CO. For CO single bonds the ranges are ?0.006(9) to +0.002(3) Å for CO conjugated with CO; and ?0.019(3) to ?0.027(9) Å for aliphatic and ether compounds. A very large and exceptional discrepancy exists for the highly strained ethylene oxide, r_s — r_e = ?0.049(5) Å and in CH₃OCH₃ and C₂H₅OCH₃ the r_s — r_e differences are ?0.029(5), ?0.040(10) and ?0.025(10) Å. Some of these discrepancies may also be due to deficiencies of the microwave substitution method caused by atomic coordinates close to inertial planes. For CN bonds, two types of NCH₃ corrections are from +0.005(6) to ?0.006(6) and from ?0.009(2) to ?0.014(6) Å; and the range for NCO is +0.012(3) to +0.028(4) Å. For isolated CC double bonds the range is + 0.025(2) to +0.028(2) Å. For conjugated CC double bonds the correction is less positive (+0.014(1) Å for benzene). For CO double bonds the corrections are ?0.004(3) to +0.003(3) Å. For bond angles of type HCH, CCH, CCC, CCO, CCO, OCO, NCO and CCC the corrections are of the order of magnitude about 1–2° (or better). Angles centered at heteroatoms are less accurate than that, when hydrogen atoms are involved. Differences in HOC and NHC angles were found in a range of ?2.3(5)° to ?6.2(4)°.     

Tetraphenylantimony <Emphasis Type="Italic">N</Emphasis>-benzoylglycinate: synthesis and structure

Tetraphenylantimony N-benzoylglycinate (I) has been synthesized by the reaction between pentaphenylantimony and N-benzoylglycine in toluene. According to X-ray diffraction data, the antimony atom in a molecule of complex I has a trigonal bipyramidal coordination to the oxygen atom in axial position. The Sb?C_eq, Sb?C_ax, and Sb?O bond lengths are 2.116(6)?2.138(6), 2.183(6), and 2.200(4) Å, respectively. The intramolecular Sb?O=C distance between the carbonyl oxygen atom and the central antimony atom is 3.35(2) Å.     

Ferrocene­carboxyl­ic acid–1,4‐di­aza­bi­cyclo­[2.2.2]­octane (2/1): sheets built from O—H⃛N and C—H⃛O hydrogen bonds

In the title compound, 2[Fe(C₅H₅)(C₆H₅O₂)]·C₆H₁₂N₂, the molecular components are linked into finite three‐component aggregates by strong O—H?N hydrogen bonds [O?N 2.578 (4) and 2.604 (5) Å; O—H?N 170 (5) and 174 (6)°]; these aggregates are further linked by C—H?O hydrogen bonds [C?O 3.327 (5)–3.401 (5) Å; C—H?O 149–157°] into continuous sheets in the form of (6,3) nets.     

4‐Iodo‐N‐(2‐nitro­phenyl­sulfanyl)­aniline: π‐stacked sheets generated by a combination of N—H⃛O and C—H⃛O hydrogen bonds

Molecules of the title compound, C₁₂H₉IN₂O₂S, are linked by one N—H⃛O hydrogen bond [H⃛O = 2.16 Å, N⃛O = 2.935 (4) Å and N—H⃛O 147°] and two C—H⃛O hydrogen bonds [H⃛O both 2.49 Å, C⃛O = 3.231 (5) and 3.220 (5) Å, and C—H⃛O = 135 and 134°] into sheets which themselves are weakly linked by an aromatic π–π‐stacking interaction between iodinated rings in centrosymmetrically related mole­cules. There are no iodo–nitro interactions.     

Synthesis and structure of tri-m-tolylbismuth dicarboxylates

Tri-m-tolylbismuth bis(2-methoxybenzoate) (I) (84%), tri-m-tolylbismuth dibenzoate (II) (91%), and tri-m-tolylbismuth bis(trichloroacetate) (III) (92%) have been synthesized via the reaction between tri-m-tolylbismuth, carboxylic acid, and hydrogen peroxide. According to X-ray diffraction data, a bismuth atom in compounds I–III have a distorted trigonal bipyramidal coordination (disregarding the additional coordination of carbonyl oxygen atoms) to m-tolyl ligands in equatorial positions. The Bi-C bonds in compounds I, II, and III range within 2.193(3)–2.228(5) Å, and the Bi-O and Bi…O(=C) distances are 2.267(3), 2.282(3) Å and 2.791(6), 2.895(6) Å in I; 2.293(2), 2.296(3) Å and 2.815, 2.905(5) Å in II; and 2.278(4), 2.300(4) Å and 3.008(9), 3.115(9) Å in III. The equatorial CBiC angles on the side of Bi…O(=C) contacts are considerably enlarged, thus decreasing the other two angles (150.6°, 104.7°, and 104.7° in I, 140.2°, 107.4°, and 112.3° in II, and 138.0°, 110.1°, and 111.0° in III).     

Clarithromycin hydro­chloride 3.5‐hydrate

The absolute configuration was determined for the title compound, C₃₈H₇₀NO₁₃⁺·Cl^?·3.5H₂O. The cation contains a 14‐membered macrocyclic lactone and two sugars, namely cladinose and desos­amine. The six‐membered rings of the sugars adopt chair conformations. The structure is stabilized by strong hydrogen bonds, with O?O distances in the range 2.486 (9)–2.830 (5) Å; other distances are N?O = 2.860 (5), N?Cl = 3.134 (4) and O?Cl = 3.303 (4) Å.     

2‐Amino‐4‐(4‐pyridyl)­pyrimidine and the 1:1 adduct with 4‐amino­benzoic acid

The structure of the title compound, C₉H₈N₄, comprises non‐planar mol­ecules that associate via pyrimidine N—H?N dimer R(8) hydrogen‐bonding associations [N?N 3.1870 (17) Å] and form linear hydrogen‐bonded chains via a pyrimidine N—H?N(pyridyl) interaction [N?N 3.0295 (19) Å]. The dihedral angle between the two rings is 24.57 (5)°. The structure of the 1:1 adduct with 4‐amino­benzoic acid, C₉H₈N₄·C₇H₇NO₂, exhibits a hydrogen‐bond­ing network involving COOH?N(pyridyl) [O?N 2.6406 (17) Å], pyrimidine N—H?N [N?N 3.0737 (19) and 3.1755 (18) Å] and acid N—H?O interactions [N?O 3.0609 (17) and 2.981 (2) Å]. The dihedral angle between the two linked rings of the base is 38.49 (6)° and the carboxyl­ic acid group binds to the stronger base group in contrast to the (less basic) complementary hydrogen‐bonding site.     

Intermolecular O—H⃛O hydrogen bonding in the three independent molecules of (2S)‐3‐(4‐hydroxyphenyl)‐2‐(1‐oxoisoindolin‐2‐yl)­propanoic acid

The title compound, C₁₇H₁₅NO₄, derived from l ‐tyrosine, crystallizes with three independent mol­ecules which differ in the conformation of the asymmetric unit: the N—C—C—C_ipso torsion angles are ?71.7 (5), ?63.6 (6) and ?52.5 (5)°, respectively. Deformations in the phenol ring hydroxy O—C—C angles of 116.5 (4)/123.9 (4), 121.7 (5)/118.1 (4) and 122.4 (5)/118.6 (5)°, respectively, result from their respective intermolecular hydrogen‐bonding environments. Intermolecular O_acid—H?O=C_indole, O_phenol—H?O—H_phenol and O_phenol—H?O=C_indole hydrogen bonds, with O?O distances in the range 2.607 (4)–2.809 (4) Å, are present in combination with C—H?O and C—H?π_arene interactions. The primary hydrogen‐bonding systems assemble with graph sets R₃³(8) and R₃²(22).     

Two crystalline polymorphic forms of α-(<Emphasis Type="Italic">N</Emphasis>-benzoxazolin-2-one)acetic acid

Two crystalline polymorphic forms of α-(N-benzoxazolin-2-one)acetic acid (BAA) are prepared by changing the temperature of its crystallization from solution in ethanol. Crystallographic data of the α-form are determined: a = 12.7769(17) Å, b = 8.2574(9) Å, c = 16.7390(19) Å, β = 105.087(13)°, space group C2/c, V = 1705.2(4) ų, and Z = 8, while those of β form are a = 5.2854(4) Å, b = 5.9880(4) Å, c = 13.4509(5) Å, β = 94.666(4)°, space group P2₁, V = 424.30(4) ų, and Z = 2. It is found that BAA molecules of the α form combine into infinite one-dimensional chains arranged along axis b by means of O?H···O and C?H···O hydrogen bonds, and these chains are crosslinked via C?H···O hydrogen bonds to form a threedimensional structure. The β form has another system of hydrogen bonds, one of which is bifurcated (O4···O2, O4···O3), and the π–π-interactions between the benzoxazolinone fragments of BAA molecules combined into a chain also arranged along axis b are observed. Calorimetric analysis shows that the polymorphic transition from the α form to the β form occurs at 129°C.     

Crystal structure,infrared and raman spectra of tripotassium trisaccha-rinate dihydrate,K<Subscript>3</Subscript>(C<Subscript>7</Subscript>H<Subscript>4</Subscript>NO<Subscript>3</Subscript>S)<Subscript>3</Subscript>·2H<Subscript>2</Subscript>O

The crystal structure of tripotassium trisaccharinate dihydrate, K₃(C₇H₄NO₃S)₃·2H₂O, is triclic, space group\(P \bar 1, Z = 2\). It consists of three crystallographically independent potassium and saccharinato ions as well as two structurally different water molecules. Potassium coordination polyhedra are irregular, with K1 and K3 six-coordinated and the third one K2 seven-coordinated. The K?O distances range from 2.652(9) to 3.100(2) Å(mean: 2.790 Å) whereas the K?N distance is 3.025(3) Å. The water molecules W2 is disordered over three positions with occupancies of approximately 0.6, 0.2 and 0.2. The hydrogen atom (H1W1) of the ordered water molecule (O1W) is hydrogen bonded to the sulfonyl oxygen atom (O11) (R(O...O)=2.976(3) Å), whereas the other hydrogen atom (H2W1) is bifurcated to the carbonyl oxygen atom (O13) (R(O...O)=2.851(3) Å) and the disordered water molecules (O23W) (R(O...O)=3.067(12) Å). The carbonyl oxygens (O13, O23 and O33) and one of the disordered water molecules (O22W) are involved in C?H...O hydrogen bonds (R(C?H...O)=3.027(4)–3.304(9) Å). Structural characteristics of the studied compound are compared with the analogous trisodium trisaccharinate dihydrate and dipotassium sodium trisaccharinate monohydrate. Infrared and Raman spectra of the title compound have been analyzed in relation to the structure, and compared with the spectra of trisodium trisaccharinate dihydrate.     

Precursor of a β‐lactamase inhibitor: allyl (4S,8S,9R)‐10‐[(E)‐ethyl­idene]‐4‐methoxy‐11‐oxo‐1‐aza­tri­cyclo­[7.2.0.03,8]­undec‐2‐ene‐2‐carboxyl­ate

The molecular structure of the title tricyclic compound, C₁₇H₂₁NO₄, which is the immediate precursor of a potent synthetic inhibitor {Lek157: sodium (8S,9R)‐10‐[(E)‐ethyl­idene]‐4‐methoxy‐11‐oxo‐1‐aza­tri­cyclo­[7.2.0.0^3,8]­undec‐2‐ene‐2‐carboxyl­ate} with remarkable potency, provides experimental evidence for the previously modelled relative position of the fused cyclo­hexyl ring and the carbonyl group of the β‐lactam ring, which takes part in the formation of the initial tetrahedral acyl–enzyme complex. In this hydro­phobic mol­ecule, the overall geometry is influenced by C—H?O intramolecular hydrogen bonds [3.046 (4) and 3.538 (6) Å, with corresponding normalized H?O distances of 2.30 and 2.46 Å], whereas the mol­ecules are interconnected through intermolecular C—H?O hydrogen bonds [3.335 (4)–3.575 (5) Å].     

Hydro­gen‐bonded molecular ladders in trans‐1,2‐bis(2‐nitro­anilino)­cyclo­hexane

Crystals of the title compound, C₁₈H₂₀N₄O₄, contain equal numbers of (R,R) and (S,S) mol­ecules, but these are not precise enantiomorphs, neither are they related by crystallographic symmetry; in addition, each mol­ecule exhibits approximate, but not exact, twofold rotational symmetry. There are intramolecular N—H?O hydrogen bonds [N?O 2.609 (4)–2.638 (5) Å; N—H?O 125–132°] and the mol­ecules are linked into molecular ladders by C—H?O hydrogen bonds [C?O 3.306 (6)–3.386 (6) Å; C—H?O 146–160°].     

Potassium hydrogen trans‐glutaconate monohydrate at 295, 245 and 40 K,and its rubidium analogue at 298 K

A centrosymmetric and short O—H?O hydrogen bond was found in isomorphic crystals of potassium hydrogen trans‐glutaconate monohydrate (potassium hydrogen trans‐pent‐2‐ene‐1,5‐dioate, K⁺·C₅H₅O₄^?·H₂O), (I), and rubidium hydrogen trans‐glutaconate monohydrate (rubidium hydrogen trans‐pent‐2‐ene‐1,5‐dioate, Rb⁺·C₅H₅O₄^?·H₂O), (II). The O?O distance at room temperature is 2.444 (3) Å in (I), and 2.417 (4) Å in (II). The O?O distance for (I) showed no significant decrease at low temperatures.