Automated structure verification based on a combination of 1D (1)H NMR and 2D (1)H - (13)C HSQC spectra

A method for structure validation based on the simultaneous analysis of a 1D (1)H NMR and 2D (1)H - (13)C single-bond correlation spectrum such as HSQC or HMQC is presented here. When compared with the validation of a structure by a 1D (1)H NMR spectrum alone, the advantage of including a 2D HSQC spectrum in structure validation is that it adds not only the information of (13)C shifts, but also which proton shifts they are directly coupled to, and an indication of which methylene protons are diastereotopic. The lack of corresponding peaks in the 2D spectrum that appear in the 1D (1)H spectrum, also gives a clear picture of which protons are attached to heteroatoms. For all these benefits, combined NMR verification was expected and found by all metrics to be superior to validation by 1D (1)H NMR alone. Using multiple real-life data sets of chemical structures and the corresponding 1D and 2D data, it was possible to unambiguously identify at least 90% of the correct structures. As part of this test, challenging incorrect structures, mostly regioisomers, were also matched with each spectrum set. For these incorrect structures, the false positive rate was observed as low as 6%.     

1H and 13C nuclear magnetic resonance study of (D3)-trishomocuban-4-ol and (D3)-trishomocubanone

The complete assignments of the ¹H and ¹³C NMR spectra for (D₃)-trishomocuban-4-ol (3) and (D₃)-trishomocubanone (4) are reported. The difference between the ¹H and ¹³C chemical shifts of 3 and 4 and those of the hydrocarbon (D₃)-trishomocubane, and the substituent effect of the hydroxy group, can be adequately explained by the unique stereochemistry of these compounds.     

Computational study of carbon atom (3P and 1D) reaction with CH2O. Theoretical evaluation of 1B1 methylene production by C (1D)

Singlet and triplet free energy surfaces for the reactions of C atom ((3)P and (1)D) with CH(2)O are studied computationally to evaluate the excited singlet ((1)B(1)) methylene formation from deoxygenation of CH(2)O by C ((1)D) atom as suggested by Shevlin et al. Carbon atoms can react by addition to the oxygen lone pair or to the C=O double bond on both the triplet and singlet surfaces. Triplet C ((3)P) atoms will deoxygenate to give CO plus CH(2) ((3)B(1)) as the major products, while singlet C ((1)D) reactions will form ketene and CO plus CH(2) ((1)A(1)). No definitive evidence of the formation of excited singlet ((1)B(1)) methylene was found on the singlet free energy surface. A conical intersection between the (1)A' and (1)A' ' surfaces located near an exit channel may play a role in product formation. The suggested (1)B(1) state of methylene may form via the (1)A' ' surface only if dynamic effects are important. In an effort to interpret experimental observation of products trapped by (Z)-2-butene, formation of cis- and trans-1,2-dimethylcyclopropane is studied computationally. The results suggests that "hot" ketene may react with (Z)-2-butene nonstereospecifically.     

Infrared spectra of ethylene clusters: (C2D4)2 and (C2D4)3

Spectra of ethylene dimers and trimers are studied in the ν(11) fundamental band region of C(2)D(4) (≈2200 cm(-1)) using a tuneable quantum cascade laser to probe a pulsed supersonic slit jet expansion. The dimer spectrum is that of a prolate symmetric top perpendicular band, with a distinctive appearance because the A rotational constant is almost exactly equal to six times the B constant. The analysis supports the previously determined cross-shaped dimer structure with D(2d) symmetry. An ethylene trimer has not previously been observed with rotational resolution. The spectrum is that of an oblate symmetric top parallel band. It leads to a proposed trimer structure which is barrel shaped and has C(3h) or C(3) symmetry, with the ethylene monomer C-C axes approximately aligned along the trimer symmetry axis.     

Total synthesis of actinomycin D(C1) via a ring-opening reaction of aziridine

Actinomycin D(C₁) has been synthesized by a route involving the ester formation between two peptide fragments, (2S,3S)-1-(2-nitro-3-benzyloxy-4-methylbenzoyl)-3-methyl-2-aziridine-carbonyl-D-valylproline t-butyl ester and N-benzyloxycarbonylsarcosyl-N-methylvaline, via a ring-opening reaction of aziridine. Cyclization, followed by reduction and oxidation, gave actinomycin D(C₁). The synthetic actinomycin D(C₁) was indistinguishable from natural substance with respect to physical properties and biological activity.     

Potential energy surface intersections in the C(1D)H2 reactive system

Potential energy surface (PES) intersection seams of two or more electronic states from the 1 1A', 2 1A', 3 1A', 1 1A", and 2 1A" states in the C(1D)H2 reactive system are investigated using the internally contracted multireference configuration interaction method and the aug-cc-pVQZ basis set. Intersection seams with energies less than 20 kcal/mol relative to the C(1D) + H2 asymptote are searched systematically, and finally several seam lines (at the linear H-C-H, linear C-H-H, and C(2v), geometries, respectively) and a seam surface (at Cs geometries) are discovered and determined. The minimum energy crossing points on these seams are reported and the influences of the PES intersections, in particular, conical intersections, on the CH2 spectroscopy and the C(1D) + H2 reaction dynamics are discussed. In addition, geometries and energies of the 1 1A2 and 1 1B2 states of methylene biradical CH2 are reported in detail for the first time.     

Absolute configuration of D(2)-symmetric fullerene C(84)

The D(2)-symmetric isomer of fullerene C(84) predominantly found in soots is inherently chiral. We determine its absolute configuration by comparison of the experimental electronic circular dichroism (CD) spectrum with time-dependent density functional calculations.     

Ab initio/Rice-Ramsperger-Kassel-Marcus study of the singlet C4H4 potential energy surface and of the reactions of C2(X1 Sigmag+) with C4H4(X1A1g) and C(1D) with C3H4 (allene and methylacetylene)

Ab initio modified Gaussian-2 G2M(RCC,MP2) calculations have been performed for various isomers and transition states on the singlet C4H4 potential energy surface. The computed relative energies and molecular parameters have then been used to calculate energy-dependent rate constants for different isomerization and dissociation processes in the C4H4 system employing Rice-Ramsperger-Kassel-Marcus theory and to predict branching ratios of possible products of the C2(1Sigmag+)+C2H4, C(1D)+H2CCCH2, and C(1D)+H3CCCH reactions under single-collision conditions. The results show that C2 adds to the double C=C bond of ethylene without a barrier to form carbenecyclopropane, which then isomerizes to butatriene by a formal C2 "insertion" into the C-C bond of the C2H4 fragment. Butatriene can rearrange to the other isomers of C4H4, including allenylcarbene, methylenecyclopropene, vinylacetylene, methylpropargylene, cyclobutadiene, tetrahedrane, methylcyclopropenylidene, and bicyclobutene. The major decomposition products of the chemically activated C4H4 molecule formed in the C2(1Sigmag+)+C2H4 reaction are calculated to be acetylene+vinylidene (48.6% at Ecol = 0) and 1-buten-3-yne-2-yl radical [i-C4H3(X2A'), H2C=C=C=CH*]+H (41.3%). As the collision energy increases from 0 to 10 kcal/mol, the relative yield of i-C4H3+H grows to 52.6% and that of C2H2+CCH2 decreases to 35.5%. For the C(1D)+allene reaction, the most important products are also i-C4H3+H (55.2%) and C2H2+CCH2 (30.1%), but for C(1D)+methylacetylene, which accesses a different region of the C4H4 singlet potential energy surface, the calculated product branching ratios differ significantly: 65%-69% for i-C4H3+H, 18%-14% for C2H2+CCH2, and approximately 8% for diacetylene+H2.     

C28 (D2): Fullerene growth mechanism

Reactions among the mono‐ to polycyclic carbon clusters have been analyzed using semiempirical AM1 and HF/6‐31G* methods. The C₂₈ (D₂) fullerene cage has been considered. Various precursors are chosen with the appropriate carbon belts. It is observed that the reactions between the precursors and the belts are essentially endoergic in nature, whereas the reactions between the stable intermediates and the final belts are exoergic. Further, the second step of the process is really akin to an annealing mechanism. Also, it has been observed that, in the annealing process, a cascade type of bond‐forming mechanism is in operation. © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

Cobalt-mediated, enantioselective synthesis of C(2) and C(1) dienes

The asymmetric C-H functionalization of norbornene and norbornadiene with five-, six-, and seven-membered cyclic enones mediated by the reactive intermediate [{η(5)-((t)BuMe(2)Si)C(5)H(4)}Co(NO)(2)] is reported. A novel base mixture derived from enantiopure ammonium salts and NaHMDS was used as a source of chirality, and this enantioselective desymmetrization of C(s) alkenes has been applied to the asymmetric synthesis of C(2)- and C(1)-symmetric diene ligands in high regioselectivity (3.7-20:1 anti/syn), near perfect diastereoselectivity (>99:1 dr), and high enantioselectivity (90-96% ee).     

A synthesis of C(16),C(18)-bis-epi-cytochalasin D via Reformatsky cyclization

Triene 5 has been prepared by the E-selective olefination of aldehyde 12 with the ylide 11. Several alternative syntheses of 12 were evaluated, and the successful route involved conversion of 22 into the vinyl ether 23 by Petasis olefination, followed by Claisen rearrangement. Diels-Alder cycloaddition of 5 with 4 gave the adduct 6 in 77% yield, and Reformatsky cyclization under dilution conditions afforded 10 (67%). After conversion to enol silane 32, oxidation with dimethyldioxirane produced 34. Conversion to a key intermediate 38 using electrophilic selenenylation and selenoxide rearrangement, followed by enolate alkylation and deprotection, gave 43. The X-ray crystal structure of 43 was determined to prove the stereochemistry.     

Order parameters based on (13)C(1)H, (13)C(1)H(2) and (13)C(1)H(3) heteronuclear dipolar powder patterns: a comparison of MAS-based solid-state NMR sequences

Order parameters describing conformational exchange processes on the nanosecond to microsecond timescale can be obtained from powder patterns in solid-state NMR (SSNMR) experiments. Extensions of these experiments to magic-angle spinning (MAS) based high-resolution experiments have been demonstrated, which show a great promise for site-specific probes of biopolymers. In this study, we present a detailed comparison of two pulse sequences, transverse Manfield-Rhim-Elleman-Vaughn (T-MREV) and Lee-Goldburg cross-polarization (LGCP), using experimental and simulation tools to explore their utility in the study of order parameters. We discuss systematic errors due to passively coupled (13)C or (1)H nuclei, as well as due to B(1) inhomogeneity. Both pulse sequences can provide quantitative measurements of the order parameter, but the LGCP experiment is capable of greater accuracy provided that the B(1) field is highly homogeneous. The T-MREV experiment is far better compensated for B(1) inhomogeneity, and it also performs better in situations with limited signal.     

Total synthesis of scytophycin C. 1. Stereoselective syntheses of the C(1)-C(18) segment and the C(19)-C(31) segment

[structure: see text] Stereoselective total synthesis of scytophycin C, a marine 22-membered macrolide displaying potent activity against a variety of human carcinoma cell lines, has been reported in which the polypropionate structure bearing contiguous asymmetric centers was stereospecifically constructed by using new acyclic stereocontrol. This paper describes stereoselective syntheses of the C(1)-C(18) segment (Segment A) including a trans-disubstituted dihydropyran ring and the C(19)-C(31) segment (Segment B) having eight stereogenic centers.     

Building blocks for (C15−C3)-modified epothilone D analogs

A promising potentially biologically active structure have been designed by isosteric rearrangement of the C¹⁵?C³ fragment of epothilone D, and building blocks necessary for its assembly have been synthesized.     

High translational energy release in H2 (D2) associative desorption from H (D) chemisorbed on C(0001)

Highly energetic translational energy distributions are reported for hydrogen and deuterium molecules desorbing associatively from the atomic chemisorption states on highly oriented pyrolytic graphite (HOPG). Laser assisted associative desorption is used to measure the time of flight of molecules desorbing from a hydrogen (deuterium) saturated HOPG surface produced by atomic exposure from a thermal atom source at around 2100 K. The translational energy distributions normal to the surface are very broad, from approximately 0.5 to approximately 3 eV, with a peak at approximately 1.3 eV. The highest translational energy measured is close to the theoretically predicted barrier height. The angular distribution of the desorbing molecules is sharply peaked along the surface normal and is consistent with thermal broadening contributing to energy release parallel to the surface. All results are in qualitative agreement with recent density functional theory calculations suggesting a lowest energy para-type dimer recombination path.     

Stereoselective synthesis of C(1)–C(9) and C(11)–C(17)fragments of protomycinolide iv based on asymmetric pinacol-typerearrangement

Two chiral intermediates, C(1)–C(9) and C(11)–C(17) portionsof protomycinolide IV, were synthesized both from (S)-ethyl lactatevia asymmetric pinacol-type rearrangement followed bydiastereoselective reactions on α-methyl-β,γ-unsaturatedcarbonyl compounds.     

Stereoselective syntheses of the C(1)-C(9) fragment of amphidinolide C

Stereoselective syntheses of the C(1)-C(9) fragments 18 and 28 of amphidinolide C have been developed. The first-generation sequence involves a diastereoselective chelate-controlled [3 + 2]-annulation reaction of 6 and 7, while the second-generation synthesis involves an intramolecular hetero-Michael cyclization of 8.     

Asymmetric Synthesis of Calyculin C. 1. Synthesis of the C(1)-C(25) Fragment

We report our synthesis of the C(1)-C(25) fragment of serine/threonine phosphatase PP1 and PP2A inhibitor, calyculin C. Synthetic efforts were directed initially toward the synthesis of a spiroketal core fragment (7), which culminated in completion of the bottom half of the natural product. The synthesis of fragment 7 and subsequent elaboration relied on an allylboration strategy for introduction of chirality. The C(1)-C(8) fragment representing the potentially unstable tetraene moiety was introduced as a separate entity.     

Distinguishing the formation of C2D+4 ions from C2D+6 (by D2 loss) and from C2D5H+ (by HD loss) in a Reflectron spectrometer

The D₂ loss from C₂D⁺₆ ions and the HD loss from C₂D₅H⁺ ions has been investigated in a photoelectron photoion coincidence experiment employing a reflecting ion time of a flight mass spectrometer (Reflectron). The experiment is able to distinguish the metastable formation of C₂D⁺₄ ions (m/z = 32) from C₂D⁺₆ ions by D₂ loss and from C₂D₅H⁺ ions by HD loss simultaneously in a mixture of deuterated ethanes. The breakdown curves of the title reactions are presented and compared to the H₂ loss from C₂H⁺₆ ions. The HD loss from C₂D₅H⁺ is shifted by 67 meV and the D₂ loss from C₂D⁺₆ is shifted by 108 meV with respect to the H₂ loss from C₂H⁺₆. This shift reflects a strong kinetic isotope effect which is most likely due to tunneling of H/D atoms through a barrier.     

Synthesis of C(1)-C(11) oxygen-bridged pregnanes

A general procedure for the synthesis of 1α,11α- and 1β,11α-epoxysteroids is described, using an intramolecular remote functionalization reaction involving the photolysis of 11α-hydroxysteroids in the presence of diacetoxyiodobenzene and iodine. Three 1,11-epoxypregnanes were prepared, two of them (compounds 10 and 14) are conformationally constrained analogues of steroidal hormones, compound 13 is a synthetic precursor of neurosteroids.