Polyamines XIV. Protonation Equilibria of Linear Tetraamines Containing two Ethylenediamine Residues

The syntheses of the linear tetraamines H₂N? (CH₂)₂? NH? (CH₂)₂? NH? (CH₂)₂? NH₂ (n = 4 and 5) are described. The protonation of the homologous tetraamines for n = 2, 3, 4, 5, 6 and 8, as well as of N-methylethylenediamine, was investigated using potentiometric and calorimetric measurements. The results obtained are discussed taking into consideration the substituent effect on the basicity of the aminic N-atoms.     

Modeling of Protonation Constants of Linear Aliphatic Dicarboxylates Containing -S-Groups in Aqueous Chloride Salt Solutions,at Different Ionic Strengths,Using the SIT and Pitzer Equations and Empirical Relationships

The protonation constants of ethylenedithiodiacetic, dithiodipropionic and dithiodibutyric acids were obtained from potentiometric measurements in NaCl(aq) (I≤5 mol⋅L⁻¹) and (CH₃)₄NCl(aq) (I≤3 mol⋅L⁻¹) at t=25 °C. Their dependences on ionic strength were modeled by the SIT and Pitzer approaches. The activity coefficients of the neutral species were obtained by solubility measurements. The literature values of the protonation constants of (HOOC)-(CH₂) _n -S-(CH₂) _n -(COOH) (n=1 to 3) and (HOOC)-(CH₂)-S-(CH₂) _n -S-(CH₂)-(COOH) (n=0 to 5) in NaCl(aq) and KCl(aq) (I≤3 mol⋅L⁻¹) at 18 °C were also analyzed using the above approaches. Both the log ₁₀ K _i ^H and interaction parameter values follow simple linear trends as a function of certain structural characteristics of the ligands. Examples of modeling these trends are reported. Electronic Supplementary Material The online version of this article () contains supplementary material, which is available to authorized users.     

Hydrophobic N‐Diazeniumdiolates and the Aqueous Interface of Sodium Dodecyl Sulfate (SDS) Micelles

Zwitterionic diazeniumdiolates of the form RN[N(O)NO^?](CH₂)₂NH₂⁺R, where R=CH₃ ( 1 ), (CH₂)₃CH₃ ( 2 ), (CH₂)₅CH₃ ( 3 ), and (CH₂)₇CH₃ ( 4 ) were synthesized by reaction of the corresponding diamines with nitric oxide. Spectrophotometrically determined pK_a(O) values, attributed to protonation at the terminal oxygen of the diazeniumdiolate group, show shifts to higher values in dependence of the chain lengths of R. The pH dependence of the decomposition of NO donors 1 – 3 was studied in buffered solution between pH 5 and 8 at 22 °C, from which pK_a(N) values for protonation at the amino nitrogen, leading to release of NO, were estimated. It is shown that the decomposition of these diazeniumdiolates is markedly catalyzed by anionic SDS micelles. First‐order rate constants for the decay of 1 – 4 were determined in phosphate buffer pH 7.4 at 22 °C as a function of SDS concentration. Micellar binding constants, K_SM, for the association of diazeniumdiolates 1 – 3 with the SDS micelles were also determined, again showing a significant increase with increasing length of the alkyl side chains. The decomposition of 1 – 3 in micellar solution is quantitatively described by using the pseudo‐phase ion‐exchange (PIE) model, in which the degree of micellar catalysis is taken into account through the ratio of the second‐order rate constants (k_2m/k_2w) for decay in the micelles and in the bulk aqueous phase. The decay kinetics of 1 – 3 were further studied in the presence of cosolvents and nonionic surfactants, but no effect on the rate of NO release was observed. The kinetic data are discussed in terms of association to the micelle–aqueous phase interface of the negatively charged micelles. The apparent interfacial pH value of SDS micelles was evaluated from comparison of the pH dependence of the first‐order decay rate constants of 2 and 3 in neat buffer and the rate data obtained for the surfactant‐mediated decay. For a bulk phase of pH 7.4, an interfacial pH of 5.7–5.8 was determined, consistent with the distribution of H⁺ in the vicinity of the negatively charged micelles. The data demonstrate the utility of 2 and 3 as probes for the determination of the apparent pH value in the Stern region of anionic micelles.     

Effect of method of ion preparation on low-energy collision-induced dissociation mass spectra

The collision-induced dissociation (CID) mass spectra of protonated cocaine and protonated heroin have been measured using a triple quadrupole mass spectrometer at 50 eV ion/neutral collision energy for protonated molecules prepared by different protonating agents. The CID mass spectra of protonated cocaine using H⁺(H₂O)_n, H⁺(NH₃)_n and H⁺((CH₃)₂NH)_n as protonating agents are essentially identical and it is concluded that, regardless of the initial site of protonation, the fragmentation reactions occurring on collisional activation are identical. By contrast, protonated heorin prepared with H⁺(H₂O)_n and H⁺(NH₃)_n as protonating agents show substantial differences. That formed by reaction of H⁺(H₂O)_n shows a much more abundant peak corresponding to loss of CH₃CO₂H. From a comparison with model compounds, and from a consideration of the three-dimensional structure of heroin, it is concluded that with H⁺(H₂O)_n as protonating agent significant protonation occurs at the acetate group attached to the alicyclic ring, leading to acetic acid loss on collisional activation, but that reaction of H⁺(NH₃)_n leads to protonation at the nitrogen function. The proton attached to nitrogen cannot interact with the acetate group and, consequently, the probability of loss of acetic acid on collislional activation is greatly reduced.     

Electronics structures of amidine and its complex with platinum(IV). Orotonation of coordinated amidine

The electronic structures of amidine CH₃C(NH)NH₂ and its complex [Pt(NH₃)₅{CH₃C(NH)NH₂}]⁴⁺ are studied by the semiempirical CNDO method and by the ab initio Hartree-Fock-Roothaan method using the effective core potential for the platinum atom by the GAUSSIAN-92 program. It is shown that in free amidine the protonation of the NH group is energetically more profitable than the protonation of the NH₂ group. Formation of the amidine-platinum(IV) ion complex is accompanied by a considerable redistribution of electron density in amidine atoms and bonds. In the above complex, the amidine NH₂ group exhibits enhanced protophilic properties. St. Petersburg State Technological Institute (Technical University). Translated fromZhurnal Strukturnoi Khimii, Vol. 37, No. 2, pp. 220–224, March–April, 1996. Translated by I. Izvekova     

Conformational Studies of Methyl Vinyl Silane from Temperature-Dependent FT–IR Spectra of Xenon and Krypton Solutions

Variable-temperature (–55 to –155°C) studies of the infrared spectra (3500–400 cm^–1) of methyl vinyl silane, CH₂CHSiH₂CH₃, dissolved in liquid xenon and krypton have been recorded. Utilizing three sets of conformer doublets due to the cis and gauche rotamers, the enthalpy difference has been determined to be 133 ± 11 cm^–1 (1.59 ± 0.13 kJ/mol) with the gauche conformer the more stable form in the krypton solution. In the xenon solution, the enthalpy difference could not be determined because the infrared bands become so broad and the overlap was so extensive that meaningful areas could not be determined. Ab initio calculations have been carried out with several different basis sets up to MP2/6-311+G(2d,2p) from which structural parameters and conformational stabilities have been determined. With the largest basis set, the cis conformer is predicted to be the more stable conformer, which is inconsistent with the experimental results. Utilizing previously reported microwave rotational constants for both conformers along with the ab initio predicted distances and angles, r ₀ parameters have been obtained for both the cis and gauche conformers. The spectroscopic and theoretical results are compared to the corresponding quantities for some similar molecules.     

On the role of solvent in complexation equilibiria. II. The acid-base chemistry of some sulfhydryl and ammonium-containing amino acids in water—acetonitrile mixed solvents

The macroscopic and microscopic acid-base chemistry of a series of sulfhydryl and ammonium-containing amino acids HS–R–NH₃ [R=–CH₂CH(COOH)–, cysteine (CYS); R=–C(CH₃)₂CH(COOH)–, penicillamine (PEN); R=–CH(COOH)CH₂CH₂CONHCH(–CH₂)CONHCH₂COOH, glutathione (GSH)] was characterized in water and its binary mixtures with acetonitrile (16.3, 34.2, and 53.9 mass % acetonitrile). Macroscopic acid dissociation constants were obtained by potentiometric titration using the glass-calomel electrode pair. Microscopic acid dissociation constants were calculated from ultraviolet absorption measurements at ca. 232 nm where the deprotonated sulfhydryl group absorbs. The macroscopic constants decrease uniformly as the solvent becomes enriched in acetonitrile. The microscopic constants, which characterize the relative concentrations of the two monoprotonated tautomers of the molecules (I and II) reveal that as the solvent becomes enriched in acetonitrile, the fraction of molecules existing as highly charged tautomer I decreases for CYS (0.68–0.40), PEN (0.85–0.34), and GSH (0.61–0.30). These results are related to the decreasing concentration of water as the solvent becomes enriched in acetonitrile.     

Conformation analysis of d‐glucaric acid in deuterium oxide by NMR based on its JHH and JCH coupling constants

d ‐Glucaric acid (GA) is an aldaric acid and consists of an asymmetric acyclic sugar backbone with a carboxyl group positioned at either end of its structure (i.e., the C1 and C6 positions). The purpose of this study was to conduct a conformation analysis of flexible GA as a solution in deuterium oxide by NMR spectroscopy, based on J‐resolved conformation analysis using proton–proton (³J_HH) and proton–carbon (²J_CH and ³J_CH) coupling constants, as well as nuclear overhauser effect spectroscopy (NOESY). The ²J_CH and ³J_CH coupling constants were measured using the J‐resolved heteronuclear multiple bond correlation (HMBC) NMR technique. NOESY correlation experiments indicated that H2 and H5 were in close proximity, despite the fact that these protons were separated by too large distance in the fully extended form of the chain structure to provide a NOESY correlation. The validities of the three possible conformers along the three different bonds (i.e., C2? C3, C3? C4, and C4? C5) were evaluated sequentially based on the J‐coupling values and the NOESY correlations. The results of these analyses suggested that there were three dominant conformers of GA, including conformer 1 , which was H2H3:gauche, H3H4:anti, and H4H5:gauche; conformer 2 , which was H2H3:gauche, H3H4:anti, and H4H5:anti; and conformer 3 , which was H2H3:gauche, H3H4: gauche, and H4H5:anti. These results also suggested that all three of these conformers exist in equilibrium with each other. Lastly, the results of the current study suggested that the conformational structures of GA in solution were ‘bent’ rather than being fully extended. Copyright © 2016 John Wiley & Sons, Ltd.     

Theoretical studies on the structure and protonation of Cu(II) complexes of a series of tripodal aliphatic tetraamines: Good correlations with the experimental data

DFT(B3LYP) studies on first protonation step of a series of Cu(II) complexes of some tripodal tetraamines with general formula N[(CH₂)_nNH₂][(CH₂)_mNH₂][(CH₂)_pNH₂] (n = m = p = 2, tren; n = 3, m = p = 2, pee; n = m = 3, p = 2, ppe; n = m = 3, tpt; n = 2, m = 3, p = 4, epb; and n = m = 3, p = 4; ppb) are reported. First, the gas‐phase proton macroaffinity of all latter complexes was calculated with considering following simple reaction: [Cu(L)]²⁺(g) + H⁺(g) → [Cu(HL)]³⁺(g). The results showed that there is a good correlation between the calculated proton macroaffinities of all complexes with their stability constants in solution. Then, we tried to determine the possible reliable structures for microspecies involved in protonation process of above complexes. The results showed that, similar to the solid state, the [Cu(L)(H₂O)]²⁺ and [Cu(HL)(H₂O)₂]³⁺ are most stable species for latter complexes and their protonated form, respectively, at gas phase. We found that there are acceptable correlations between the formation constants of above complexes with both the ? and ? of following reaction: [Cu(L)(H₂O)]²⁺(g) + H⁺(g) + H₂O(g) → [Cu(HL)(H₂O)₂]³⁺(g). The ? of the latter reaction can be defined as a theoretically solvent–proton macroaffinity of reactant complexes because they have gained one proton and one molecule of the solvent. The unknown formation constant of [Cu(epb)]²⁺ complex was also predicted from the observed correlations. In addition, the first proton affinity of all complexes was studied in solution using DPCM and CPCM methods. It was shown that there is an acceptable correlation between the solvent–proton affinities of [Cu(L)(H₂O)]²⁺ complexes with formation constants of [Cu(HL)(H₂O)₂]³⁺ complexes in solution. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2010     

Conformational and Structural Studies of 1-Fluoropropane from Temperature Dependant FT-IR Spectra of Rare Gas Solutions and Ab Initio Calculations

Variable temperature (–55 to –150°C) studies of the infrared spectra (3500 to 400 cm^–1) of 1-fluoropropane, CH₃CH₂CH₂F, dissolved in liquid krypton and xenon have been recorded. Utilizing three conformer pairs in the krypton solution and four conformer pairs in the xenon solution, enthalpy differences of 104±6 cm^–1 (1.24±0.07 kJ/mol) and 99±5 cm^–1 (1.16±0.06 kJ/mol) were obtained from the krypton and xenon solutions, respectively, with the gauche form the more stable conformer. From these data it is estimated that 24% of the trans forms is present at ambient temperature. The conformational stabilities, harmonic force constants, fundamental frequencies, infrared intensities and Raman activities have been obtained from RHF/6-31G(d) and/or MP2/6-31G(d) ab initio calculations and these quantities have been compared to the experimental values when appropriate. The optimized geometries have also been obtained with several different ab initio basis sets up to MP2/6-311+G(2d,2p). The r₀ structural parameters have been obtained by combining the ab initio data with the previously reported rotational constants for both conformers. The results are compared to the corresponding results for some similar molecules.     

Quantum-Chemical Study of the Electronic and Steric Structure of Vinyltetrazoles: II. 2-Vinyltetrazoles

The total Mulliken charges on the C and N atoms, populations of the S-trans-(N¹) conformers, and rotation barriers in the molecules of 2-vinyl-5-R-tetrazoles (R = H, CH₃, CH = CH₂, C₆H₅, CH₂Cl, CF₃) were calculated ab initio (HF/6-31G**, MP2/6-31G**). The results were compared with the ¹H and ¹³C NMR data for these compounds.     

Etude spectroscopique de derives mercuriques d'amides-thiols: I. Spectres de vibration et structure des thiol-2 N-méthylacétamide,thiol-3 N-méthylpropanamide et N-(thiol-2 éthyle) acétamide

Raman and infrared spectra of CH₃NHCOCH₂SH, CH₃NHCO(CH₂)₂SH and CH₃CONH(CH₂)₂SH have been recorded between 3800 and 200 cm^?1. Some structural information is obtained from their analysis: for pure liquids or solids, molecules form linear chains with NH ? OC hydrogen bonds, the SH group being probably bound to the oxygen of an adjacent molecule. For CCl₄ solutions, an intramolecular hydrogen bond NH ? S is observed for the first compound only, corresponding to the formation of a five-membered ring.     

Polyamines XV. Thermodynamics of Metal Complex Formation of Linear Tetraamines Containing Two Ethylenediamine Residues

The complex formation of Co²⁺, Ni²⁺, Cu²⁺, Zn²⁺, Pb²⁺ and Hg²⁺ with three tetraamines of type H₂N? (CH₂)₂? NH? (CH₂)_n? NH? (CH₂)₂? NH₂ (= 2, n, 2-tet) for n = 2. 3 and 4, and with N-methylethylenediamine (= nmen) have been investigated at 25° and I = 1(KNQ₃). The stability constants and the heat evolved by formation of the (1:1)-complexes ML have been determined. It is shown that the more stable complexes are normally formed by 2,3,2-tet-ligands. These results are discussed relating the thermodynamic data obtained to the stereochemistry of the complexes and using the visible spectra of the complexes in solution. The change in enthalpy is found to be the dominant factor and the measure of the steric strain whereas the entropy of complex formation decreases slowly.     

Interpretation der Schwingungsspektren von (CH3)2SO2, (CH3)2SO(NH) und (CH3)2S(NH)2 unter Verwendung eines Kopplungsstufenverfahrens

Normal Coordinate Analysis of (CH₃)₂SO₂, (CH₃)₂SO(NH), and (CH₃)₂S(NH)₂ using the Method of Stepwise Coupling The qualitative assignment of the vibrational spectra of (CH₃)₂SO₂ ( 1 ), (CH₃)₂SO(NH) ( 2 a ), and (CH₃)₂S(NH)₂ ( 3 a ) and of the C and N deuterated derivatives of 2 a and 3 a is used in a normal coordinate analysis by the method of stepwise coupling. The force constants and the energy distributions are calculated in symmetry coordinates using a generalized valence force field.     

Dissociation constants of 2‐azidoethanamines in aqueous solution

Aqueous‐phase dissociation constants (K_a) for the conjugate acids of a series of 2‐azidoethanamine bases: R¹N(R²)CH₂CH₂N₃ ( 1 , R¹ = CH₃, R² = H; 2 , R¹ = CH₃, R² = CH₃; 3 , R¹ = CH₂CH₃, R² = CH₂CH₃; 4 , R¹/R² =  CH₂CH₂CH₂CH₂ ; 5 , R¹/R² =  CH₂CH₂OCH₂CH₂ ; 6 , R¹ = CH₂CH₃, R² = CH₂CH₂N₃) were measured and found to fall between those for analogous unfunctionalized and cyano‐functionalized ethanamines. To explore the possibility of a relationship existing between the constants and molecular geometry, a theoretically based study was conducted. In it, the Gibbs free energies of aqueous‐phase (equilibrium) conformers of the bases and their conjugate acids were determined via a density functional theory/polarizable continuum model method. The results indicate that an attractive interaction between the amine and azide groups that underlies the lowest‐energy gas‐phase conformer of 2 is negated in an aqueous environment by solvent–solute interactions. The magnitudes of the free energy changes of solvation and −TS (entropic) energies of the conformers of the 2‐azidoethanamines and their conjugate acids are observed to correlate with the magnitude of the separation between the conformers' amine and azide groups. However, those correlations are not by themselves sufficient to predict the relative free energies of a molecule's conformers in an aqueous environment. That insufficiency is due to the influence of the correlations being mitigated by three other parameters that arise within the thermodynamic framework employed to compute the observable. The nature of those parameters is discussed. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

The interaction of water with sulfonium ions and the effects of hydration on the energetics of methyl group transfer: An ab initio molecular orbital study of the hydration of (CH3)3S+ and (CH3)2S+CH2CO2 −

The interactions of the sulfonium ions (CH₃)₃S⁺, (CH₃)₂S⁺CH₂CO₂ ^–, and (CH₃)₂S⁺-CH₂CH₂CO₂ ^– with up to four water molecules have been studied by ab initio molecular orbital methods. Complexes of (CH₃)₃S⁺ with one to three water molecules involve strong electrostatic sulfur-oxygen interactions; in contrast, the sulfide (CH₃)₂S interacts with water molecules via weak S-H hydrogen bonds, suggesting that methyl-group transfer from (CH₃)₃S⁺ in aqueous solution involves a significant alteration of the hydration pattern around the sulfur atom. Two conformers of (CH₃)₂S⁺CH₂CO₂ ^– were found that display sulfur-oxygen distances which are approximately 0.3 å less than the sum of the sulfur and oxygen van der Waals radii, indicating a strong intramolecular electrostatic interaction. For the complexes (CH₃)₂S⁺CH₂CO₂ ^–·nH₂O(n =1–4), water interacts primarily with the carboxylate group via hydrogen bonds, rather than electrostatically with the sulfur atom, although in complexes with the three- and four-water complexes, the proximity of the positively charged sulfur atom to the carboxylate group significantly alters the hydration pattern compared to that in the corresponding of complexes CH₃SCH₂CO₂ ^–· Thus, methyl transfer from (CH₃)₂S⁺CH₂CO₂ ^– to an acceptor in aqueous solution also involves substantial changes in the hydration pattern around the carboxylate group.     

Assembly and Dissociation of Α-Cyclodextrin [2]Pseudorotaxanes with α,ω-Bis(N-(N,N′-dimethylethylenediamine)alkane Threads

A series of novel bischelate bridging ligands, CH₃NH(CH₂)₂N(CH₃)(CH₂)_nN(CH₃)(CH₂)₂NHCH₃ (n = 9, 10, 11, and 12) were synthesized as hydrochloride salts and characterized by elemental analyses, electrospray mass spectrometry, and ¹H and ¹³C NMR spectroscopy. These ligands form [2]pseudorotaxanes with α-cyclodextrin (α-CD) and the stability constants have been determined from ¹H NMR titrations in D₂O. The kinetics and mechanism of the assembly and dissociation of a [2]pseudorotaxane in which α-CD has been threaded by the CH₃NH₂(CH₂)₂N(CH₃)(CH₂)₁₂N(CH₃)(CH₂)₂NH₂CH₃²⁺ ligand were determined in aqueous solution using ¹H NMR spectroscopy. A weak inclusion of the dimethylethylenediamine end group precedes the passage of the α-CD onto the hydrophobic dodecamethylene chain.     

Formation of supramolecular complexes in reactions of adduct formation of zinc diethyldithiocarbamate with morpholine. Molecular structures and thermal properties

A supramolecular compound of the general formula [Zn{NH(CH₂)₄O} {S₂CN(C₂H₅)₂}₂]₄ · NH(CH₂)₄O · C₂H₄{N(CH₂)₄O}₂ (I) was obtained and examined by X-ray diffraction analysis and thermography. According to X-ray diffraction data, the crystal lattice of compound I shows an unusual alternation of two independent centrosymmetric supramolecular complexes [Zn{NH(CH₂)₄O} {S₂CN(C₂H₅)₂}₂]₂ · C₂H₄{N(CH₂)₄O}₂ (Ia) and [Zn{NH(CH₂)₄O} {S₂CN(C₂H₅)₂}₂]₂ · NH(CH₂)₄O (Ib). Either complex includes two molecules of an adduct of bis(diethyldithiocarbamato)zinc with morpholine and outer-sphere molecules of 1,2-dimorpholinoethane or morpholine. Adduct molecules are structurally nonequivalent in pairs and linked with solvate molecules by hydrogen bonds. The calculated geometries of the zinc polyhedra are intermediate between trigonal bipyramid and tetragonal pyramid. Thermal decomposition of supramolecular compound I proceeds through desorption of the outer-sphere and coordinated organic molecules; in the final step, defragmentation of the dithiocarbamate part gives zinc sulfide.     

Nonisothermal membrane phenomena across perfluorosulfonic acid-type membranes,Flemion S: part I. Thermoosmosis and transported entropy of water

Solvent transports across the perfluorosulfonic acid-type membrane Flemion S were measured for aqueous electrolyte solutions under a temperature difference and under an osmotic pressure difference. H⁺, Li⁺, Na⁺, K⁺, NH ₄ ⁺ , CH₃NH ₃ ⁺ , (CH₃)₂NH ₂ ⁺ , (CH₃)₃NH⁺, (CH₃)₄N⁺, (C₂H₅)₄N⁺, (n-C₃H₇)₄N⁺ and (n-C₄H₉)₄N⁺ were used as counterions. Water flux across the membrane in HCl solution is higher than that in the other electrolyte solutions because hydrogen ions can exchange with the hydrogen of the neighbor water molecules and contribute to the water transport across the membrane as a proton jump in conductivity. The direction of thermoosmosis across the membrane in HCl, NaCl, (CH₃)₄NCl and (C₂H₅)₄NCl solutions was from the cold side to the hot side and that in LiCl, KCl, NH₄Cl, CH₃NH₃Cl, (CH₃)₂NH₂Cl and (n-C₄H₉)₄NBr solutions was from the hot side to the cold side, although thermoosmosis across anion-exchange membranes always occurs toward the hot side.