Theoretical analysis of the terahertz spectrum of the high explosive PETN.

The experimental solid-state terahertz (THz) spectrum (3 to 120 cm(-1)) of the high explosive pentaerythritol tetranitrate (PETN, C(5)H(6)N(4)O(12)) has been modeled using solid-state density functional theory (DFT) calculations. Solid-state DFT, employing the BP density functional, is in best qualitative agreement with the features in the previously reported THz spectrum. The crystal environment of PETN includes numerous intermolecular hydrogen-bonding interactions that contribute to large (up to 80 cm(-1)) calculated shifts in molecular normal-mode positions in the solid state. Comparison of the isolated-molecule and solid-state normal-mode calculations for a series of density functionals reveals the extent to which the inclusion of crystal-packing interactions and the relative motions between molecules are required for correctly reproducing the vibrational structure of solid-state THz spectra. The THz structure below 120 cm(-1) is a combination of both intermolecular (relative rotations and translations) and intramolecular (torsions, large amplitude motions) vibrational motions. Vibrational-mode analyses indicate that the first major feature (67.2 cm(-1)) in the PETN THz spectrum contains all of the optical rotational and translational cell modes and no internal (molecular) vibrational modes.     

Polarized IR-microscope spectra of guanidinium hydrogenselenate single crystal

The polarized IR-microscope spectra of C(NH2)3.HSeO4 small single crystal samples were measured at room temperature. The spectra are discussed with the framework of oriented gas model approximation and group theory. The stretching nuOH vibration of the hydrogen bond with the O...O distance of 2.616 A gives characteristic broad AB-type absorption in the IR spectra. The changes of intensity of the AB bands in function of polarizer angle are described. Detailed assignment for bands derived from stretching and bending modes of selenate anions and guanidinium cations were performed. The observed intensities of these bands in polarized infrared spectra were correlated with theoretical calculation of directional cosines of selected transition dipole moments for investigated crystal. The vibrational studies seem to be helpful in understanding of physical and chemical properties of described compound and also in design of new complexes with exactly defined behaviors.     

Vibrational study of [(CH3)4N]2Cu0.5Zn0.5Cl4

[(CH3)4N]2Zn0.5Cu0.5Cl4 shows an orthorhombic system at ambient temperature with P2(1)nb space group. At room temperature, the crystal consists of three sublattices constituted by MCl4 (M=Cu and Zn) and two tetramethylammoniums N1(CH3)4 and N2(CH3)4, which give rise to a total of 372 vibrational modes that transform according to the four irreductible representations of the C2v point group in the following way: Gamma(vib)=93(A1+A2+B1+B2). The infrared and Raman spectra of polycrystalline samples have been investigated at room temperature. The assignment of the observed bands is discussed.     

FT-Raman spectroscopic investigation of a pseudopolymorphic transition in caffeine hydrate

The FT-Raman spectra of caffeine hydrate and anhydrous β-caffeine have been recorded. The accelerated dehydration of the hydrate has been monitored at 30, 35 and 40°C using an environmental chamber. The spectra representing the individual pseudopolymorphic phases differed subtly throughout the entire spectral range. Gradual broadening of the =CH stretching vibration observed at 3121 cm⁻¹ and the progressive appearance of a C=O stretch at 1656 cm⁻¹ were ascribed to intermolecular bonding between CH and C=O in the anhydrous phase. Accompanying loss of resolution of CH deformations in the lower wavenumber region observed at 1475 and 1255 cm⁻¹ supports the suggestion of intermolecular association involving CH. Concurrent loss of resolution of the weak C=N stretch at 1454 cm⁻¹ and recession of the medium intensity H---C=N deformation at 1255 cm⁻¹ were also detected, acknowledging the loss of interaction between N9 of the imidazole ring and the water molecule. The concomitant disappearance of the weak H₂O libration at 890 cm⁻¹ is observed, which suggests the occurrence of molecular realignment associated with corresponding loss of water of crystallisation. On removal of the hydrate backbone of the caffeine hydrate crystal structure, the lattice collapses, resulting in reduction of the intermolecular distance between individual caffeine molecules. The subsequent formation of a less rigid structure is evident, whereby molecules are weakly associated by unconventional CH…O interactions.     

Two modifications formed by "sulflower" C16S8 molecules, their study by XRD and optical spectroscopy (Raman, IR, UV-Vis) methods

Sublimation of sulflower, octathio[8]circulene C 16S 8 ( 1), on heating under high vacuum ( approximately 10 (-5) Torr) leads to successive formation of two modifications: a white film ( 1W) and a red polycrystalline solid ( 1R). When kept at room temperature for several weeks, 1W spontaneously turns pink, reflecting the monotropic phase transition 1W --> 1R. The accurate molecular and crystal structure of 1R has been studied using low-temperature (100 K) high-resolution single crystal X-ray analysis. The C 16S 8 molecule in crystal is strictly planar with nearly equalized bonds of each type (C-C, C-S, and CC). The point symmetry group of the free molecule is D 8 h , and the crystal space group is P2 1/ n. These data allowed group-theoretical analysis of vibrational normal modes to be accomplished. Investigation of the charge density distribution of 1R including Bader's AIM approach has revealed rather strong intermolecular S...S, S...C, and C...C interactions of charge transfer and pi-stacking types with overall lattice energy of 28.5 kcal/mol. The charge transfer due to the S...S interactions is the reason for the red coloration of 1R. The latter is reflected by its UV-vis spectrum exhibiting absorption bands in the visible region which are absent from that of 1W. Both modifications were studied comparatively by vibrational (Raman, IR) and electronic spectroscopies as well as XRD powder diffraction. All the results obtained are fully consistent and show that 1W is much less ordered than 1R with significantly weakened intermolecular interactions. Rationalizing of these results has led to an idea that 1W could be soluble, in contrast to 1R. Indeed, 1W appeared soluble in common solvents; this finding opens the way to the study of the chemistry of 1 and investigation of its electrooptical properties.     

Temperature-dependent vibrational spectroscopic studies of pure and gold nanoparticles dispersed 4-n-Hexyloxy-4’-cyanobiphenyls

Raman spectra of pure and 2 wt.% gold nanoparticles (GNPs) dispersed liquid crystalline compound 4-n-Hexyloxy-4?- cyanobiphenyls (6OCB) has been recorded as a function of temperature from room temperature (solid crystal) to 80°C (isotropic liquid) in the spectral region of 500–2500 cm^?1. The variation of Raman spectral parameters (peak positions and line width) with temperature is used to explain the changes in molecular alignment and its effect on inter-/intra-molecular interactions at crystal-Nematic (K-N) transition. To understand the change in molecular structure during phase transition and on account of dispersion of gold nanoparticles in pure liquid crystal more precisely, two spectral regions 1000–1500 cm^?1 and 1500–2400 cm^?1 have been selected separately. From the detailed study, it is concluded that increased orientational/vibrational freedom of the molecules as well as delocalisation of electron clouds results in the spectral anomalies at K-N transition. The geometrical structure of 6OCB was optimised using density functional theory (DFT) and theoretical Raman spectra have been obtained for comparison with experimental spectra. The tentative assignment of vibrational modes observed in our region of study was calculated based on potential energy distribution (PED) using vibrational energy distribution analysis (VEDA) calculation.     

Solution and single crystal raman spectra of potassium hexacyanochromate(III)

Some inconsistency has existed in the assignment of the vibrational spectra of the Cr(CN)₆^3? ion, and the crystal structure of K₃Cr(CN)₆ has been described both as monoclinic C_2h⁵ and as orthorhombic D_2h¹⁴. The solution and single crystal Raman spectra were recorded at room temperature. On the basis of these data a new assignment was made and the crystal structure was determined to be orthorhombic.     

Solid-state vibrational spectra and theoretical study of alaninamide acetate

Solid-state IR and Raman spectroscopic elucidation of alaninamide acetate is preformed by means of the possibilities of linear-polarized IR and Raman methods. The experimental assignment is compared with theoretical vibrational analysis with the intention to explain the influence of intermolecular interactions in solid phase on the spectroscopic properties of the compound studied. The 1H and ¹³C NMR spectra in solution are compared with the corresponding ones of alanine, studying the amidation effect on the chemical shift signals in the alanine moieties.     

Vibrational spectra of anhydrous and monohydrated caffeine and theophylline molecules and crystals

Density functional theory and classical molecular dynamics simulations are used to investigate the vibrational spectra of caffeine and theophylline anhydrous and monohydrate molecules and those of their crystalline anhydrous and monohydrated states, with emphasis in the terahertz region of the spectra. To better understand the influence of water in the monohydrate crystal spectra, we analyze the vibrational spectra of water monomer, dimer, tetramer, and pentamer, and also those of liquid water at two different temperatures. In small water clusters, we observe the progressive addition of translational and librational modes to the terahertz region of the spectra. The water spectra predicted by rigid and flexible water models is examined with classical molecular dynamics, and the respective peaks, especially in the terahertz region, are compared with those found in the small clusters. Similar analysis done for caffeine and theophylline monohydrate molecules using density functional theory clearly shows the presence of water modes in the librational states and in the water stretching region. Molecular dynamics of caffeine and theophylline anhydrous and monohydrate crystals reveal the influence of vibrations from the molecule-molecule (caffeine or theophylline) crystal stacks and those from the water-molecule interactions found in the monohydrate molecules and new modes from molecule-molecule, water-molecule, and water-water hydrogen bonding interactions arising from collective effects in the crystal structure. Findings illustrate challenges of terahertz technology for the detection of specific substances in condensed phases.     

IR Spectra of Paracetamol and Phenacetin. 1. Theoretical and Experimental Studies

IR spectra of paracetamol and phenacetin have been measured for powder crystals of these compounds and for their solutions in chloroform and dimethylsulfoxide. Ab initio calculations of their equilibrium geometry and vibrational spectra were carried out for spectrum interpretation. Differences between the experimental IR spectra of solutions and crystalline samples have been analyzed. Variations of molecular structure from the isolated state to molecular crystal were estimated based on the difference between the optimized molecular parameters of free molecules and the experimental bond lengths and angles evaluated for the crystal forms of the title compounds. The role of hydrogen bonds in the structure of molecular crystals of paracetamol and phenacetin is investigated, and spectral ranges with maximal intermolecular interactions are determined.     

Terahertz Time-Domain Spectroscopy of Naphthalene and Naphthols

Low-energy vibrational modes have been investigated in polycrystalline naphthalene and its derivatives naphthols using terahertz time-domain spectroscopy (THz-TDS) over the frequency range from 17 to 73 cm^–1 (0.5–2.2 THz) at room temperature. We propose that naphthalene and naphthols show spectral features originating from intermolecular vibrational modes. Because of the collective origin of the observed modes, the absorption spectra are highly sensitive to the overall structure and configuration of the molecules, as well as their environments. For light-sensitive materials, the THz-TDS procedure can avoid effects like photobleaching.     

Excited-state distortions of cyclometalated Ir(III) complexes determined from the vibronic structure in luminescence spectra

The luminescence spectra of [(tpy)(2)Ir(CN-t-Bu)2](CF(3)SO(3)) in methylcyclohexane glass and frozen n-nonane at 15 K reveal well-resolved vibronic fine structure. The vibronic peaks are assigned by comparison with the vibrational frequencies obtained from Raman and IR spectra and those obtained using DFT electronic structure calculations. The magnitudes of the distortions along the normal coordinates are calculated by fitting the emission spectra using the time-dependent theory of spectroscopy. Broadening effects and the MIME frequency observed at room temperature are interpreted. The most highly distorted normal modes involve atomic motions on the tpy ligand, consistent with the metal to ligand/ligand centered assignment of the electronic transition.     

Polymorphism of phenylpyruvic acid studied by IR, Raman and solid state C NMR spectroscopy

Polymorphs I and II of phenylpyruvic acid are obtained as mixtures of both crystal forms or relatively pure crystals, from different solvents. Polymorph I is more stable than polymorph II at room temperature. Spectral characteristics of these polymorphs are discussed on the basis of IR, Raman and solid state ¹³C NMR spectra. Also, the assignment of the IR features observed in the 1600–1700 cm⁻¹ region is re-investigated by referring to the spectra of heavy-atom substituted derivatives. It is suggested that the C=O stretching band is split by the crystal field for both polymorphs.     

Crystal structure of nitromethane up to the reaction threshold pressure

Angle dispersion X-ray diffraction (AXDX) experiments on nitromethane single crystals and powder were performed at room temperature as a function of pressure up to 19.0 and 27.3 GPa, respectively, in a membrane diamond anvil cell (MDAC). The atomic positions were refined at 1.1, 3.2, 7.6, 11.0, and 15.0 GPa using the single-crystal data, while the equation of state (EOS) was extended up to 27.3 GPa, which is close to the nitromethane decomposition threshold pressure at room temperature in static conditions. The crystal structure was found to be orthorhombic, space group P2(1)2(1)2(1), with four molecules per unit cell, up to the highest pressure. In contrast, the molecular geometry undergoes an important change consisting of a gradual blocking of the methyl group libration about the C-N bond axis, starting just above the melting pressure and completed only between 7.6 and 11.0 GPa. Above this pressure, the orientation of the methyl group is quasi-eclipsed with respect to the NO bonds. This conformation allows the buildup of networks of strong intermolecular O...H-C interactions mainly in the bc and ac planes, stabilizing the crystal structure. This structural evolution determines important modifications in the IR and Raman spectra, occurring around 10 GPa. Present measurements of the Raman and IR vibrational spectra as a function of pressure at different temperatures evidence the existence of a kinetic barrier for this internal rearrangement.     

Comparison of experimental and density functional study on the molecular structure, infrared and Raman spectra and vibrational assignments of 6-chloronicotinic acid

The experimental and theoretical study on the structures and vibrations of 6-chloronicotinic acid (6-CNA, C(6)H(4)ClNO(2)) are presented. The Fourier transform infrared spectra (4,000-50 cm(-1)) and the Fourier transform Raman spectra (3,500-50 cm(-1)) of the title molecule in solid phase have been recorded, for the first time. The geometrical parameters and energies have been obtained for all four conformers from DFT (B3LYP) with different basis sets calculations. There are four conformers, C1, C2, C3, and C4 for this molecule. The computational results diagnose the most stable conformer of 6-CNA as the C1 form. The vibrations of the two stable and two unstable conformers of 6-CNA are researched with the aid of quantum chemical calculations. The molecular structure, vibrational frequencies, infrared intensities and Raman scattering activities and theoretical vibrational spectra were calculated a pair of molecules linked by the intermolecular OH...O hydrogen bond. The spectroscopic and theoretical results are compared to the corresponding properties for 6-CNA stable monomers and dimer of C1 conformer.     

Vibrational spectroscopic study on the quantum chemical model and the X-ray structure of gallic acid,solvent effect on the structure and spectra

Infrared, Raman and far-IR spectra of gallic acid were recorded both in crystalline and in its dry form. Solvent effect of water was studied. The molecular and crystal structures were determined by single crystal X-ray diffraction. A complex system of intermolecular interactions was revealed. Optimized geometries, vibrational frequencies and infrared intensities were calculated utilizing the post-HF DFT method with the Becke3LYP functional and the 6-31G* basis set. Normal coordinate analysis was carried out. The results of the calculations were applied to simulate the infrared and Raman spectra and the full assignment of the acquired spectra is presented.     

Structural and polarized vibrational studies of pentacaesium trihydrogentetraselenate monohydrate

Polarized IR and Raman spectra of single crystal were measured at room and at low temperature. The polarized IR spectra were measured by transmission and specular reflection method. The IR-microscope was used for vibrational measurement of small monocrystals. Assignment of the bands is proposed on the basis of oriented gas model approximation. The polarized vibrational spectra are discussed in relation to the crystal structure and possible proton conductivity and phase transition.     

Infrared and laser Raman studies of bis(L-threoninium) sulphate monohydrate

The infrared and Raman spectra of bis(L-threoninium) sulphate monohydrate crystal have been recorded and analysed at room temperature. The proposed assignment of normal modes is based on group theoretical analysis. There is extensive intermolecular hydrogen bonding in the crystal and this is responsible for the changes in the position and intensity of several bands. The anion fundamentals continue to be degenerated which indicates that its symmetry is unaffected in the molecule.     

Raman spectra of high pressure phase and phase transition of polytetrafluoroethylene (teflon)

Raman spectra of phases II and III of crystalline polytetrafluoroethylene at room temperature and several pressures to 35 kbar are reported and discussed in terms of the information provided about molecular conformation, crystal structures, and the phase transition. A revised vibrational assignment is reported for phase II spectra which suggests that the 1215- and 1295-cm^?1 bands are not fundamentals but are combinations of overtones with A₁ symmetry of a cyclic group.     

L-arginine trifluoroacetate salt bridges in its solid state compound: the low-temperature three dimensional structural determination of L-arginine bis(trifluoroacetate) crystal and its vibrational spectral analysis

Structural varieties of L-arginine trifluoroacetate (abbreviated as LATF) and L-arginine bis(trifluoroacetate), LABTF, in the solid state compounds were observed and analyzed by the nuclear magnetic resonance (NMR) spectroscopy. The guanidinium-carboxylate interaction plays an important role involving in the crystal structure construction. Conformational changes of L-Arg(+) and L-Arg(2+) cations result from the intrinsic structural difference by hydrogen bonding and electrostatic interactions. The low-temperature structure of its crystalline salt, L-arginine bis(trifluoroacetate), was determined to describe the hydrogen bonding interactions. In comparison with the crystal structure at room temperature, the low-temperature L-Arg(2+) cations present tiny conformational difference and the rotational disorder of CF(3) group disappears. FT-IR and Raman spectra were investigated and hydrogen bonding interactions were analyzed on the basis of its vibrational spectra. Results indicate that this type interaction is greatly contributive to the structural features and vibrational spectral properties.