Ab initio studies of ClO(x) reactions: prediction of the rate constants of ClO+NO2 for the forward and reverse processes.

The potential-energy surface for the reaction of ClO with NO2 has been constructed at the CCSD(T)/6-311+G(3df)//B3LYP/6-311+G(3df) level of theory. Six ClNO3 isomers are located; these are ClONO2, pc-ClOONO, pt-ClOONO, OClNO2, pt-OClONO, pc-OClONO, with predicted energies relative to the reactants of -25.6, -0.5, 1.0, 1.9, 12.2 and 13.6 kcal mol-1, and heats of formation at 0 K of 7.8, 32.9, 34.4, 35.5, 45.6 and 47.0 kcal mol-1, respectively. Isomerizations among them are also discussed. The rate constants for the low-energy pathways have been computed by statistical theory calculations. For the association reaction producing exclusively ClONO2, the predicted low- and high-pressure-limit rate constants in N2 for the temperature range of 200-600 K can be represented by: (N2)=3.19 x 10-17 T-5.54 exp(-384 K/T) cm6 molecule-2 s-1 and =3.33 x 10-7 T-1.48 exp(-18 K/T) cm3 molecule-1 s-1. The predicted low- and high-pressure-limit rate constants for the decomposition of ClONO2 in N2 at 200-600 K can be expressed, respectively, by =6.08 x 1013 T-6.54 exp(-13813 K/T) cm3 molecule-1 s-1 and =4.59 x 1023 T-2.43 exp(-13437 K/T) s-1. The predicted values compare satisfactorily with available experimental data. The reverse Cl+NO3 reaction was found to be independent of the pressure, giving exclusively ClO+NO2; the predicted rate constant can be expressed as k(Cl+NO3)=1.19 x 10-9 T-0.60 exp(58 K/T) cm3 molecule-1 s-1..     

ClONO2异构化反应和分解反应的理论研究

The potential energy surface for the decomposition and isomerization of Chlorine Nitrate（ClONO2）is calculated using the G3 theory. Geometries of related species are optimized at the MP2（ full）/6-31+G（d）and B3LYP/6-31+G（d）level. Vibrational frequencies and IR intensities of ClONO2 have been calculated at the same level. Obtained geometries and vibrational frequencies as well as IR intensities for ClONO2 are in good agreement with experimental values. A new stable stereoisomer is verified by CCSD（T）and QCISD（T）methods at 6-311G （d）basis set. Calculated geometries using above methods for this stereoisomer are in accord with each other. The calculated reaction heat of ClONO2 are also in good agreement with the available data in the literature. Among these reactions of ClONO2,the stereoisomer reaction is the hardest one. The barrier height for this reaction is 481.52 kJ/mol relative to ClONO2 and the reaction is endothermic by 299.85 kJ/mol. On the other hand,among these unimolecular reactions of ClONO2,the decomposition reaction of NO2+ClO is the easiest one. These results indicate that ClONO2 is very stable.     

Can the ebselen derivatives catalyze the isomerization of peroxynitrite to nitrate?

The reaction of ebselen and its derivatives (1-7) with peroxynitrite anion (ONOO(-); PN) has been studied in gas phase and in aqueous, dichloromethane, benzene, and cyclohexane solutions using B3LYP/6-311+G(d,p)//B3LYP/6-311G(d,p) and PCM-B3LYP/6-311+G(d,p)//B3LYP/6-311G(d,p) approaches, respectively. It was shown that the reaction of 2 (R=H) with PN proceeds via 2 + PN --> 2-PN --> 2-TS1 (O-O activation) --> 2-O(NO(2)(-)()) --> 2-SeO + NO(2)(-) pathway with a rate-determining barrier of 25.3 (14.8) kcal/mol at the NO(2)(-) dissociation step (numbers presented without parentheses are enthalpies, and those in parentheses are Gibbs free energies). The NO(3)(-) formation process, starting from the complex 2-O(NO(2)(-)()), requires by (7.9) kcal/mol more energy than the NO(2)(-) dissociation process and is unlikely to compete with the latter. Thus, in the gas phase, the peroxynitrite --> nitrate isomerization catalyzed by complex 2 is unlikely to occur. It is shown that the NO(3)(-) formation process is slightly more favorably than the NO(2)(-) dissociation process for complex 4, with a strongest electron-withdrawing ligand R=CF(3). Therefore, complex 4 (as well as complex 6 with R=OH) is predicted to be a good catalyst for peroxynitrite <--> nitrite isomerization in the gas phase. Solvent effects (a) change the rate-determining step of the reaction 2 + PN from NO(2)(-) dissociation in the gas phase to O-O activation, which occurs with barriers of (13.9), (8.4), (8.4), and (8.2) kcal/mol in water, dichloromethane, benzene, and cyclohexane, respectively, and (b) significantly reduce the NO(2)(-) dissociation energy, while only slightly destabilizing the NO(3)(-) formation barrier, and make the peroxynitrite <--> nitrate isomerization process practically impossible, even for complex 4.     

The lowest-lying electronic singlet and triplet potential energy surfaces for the HNO-NOH system: energetics, unimolecular rate constants, tunneling and kinetic isotope effects for the isomerization and dissociation reactions

The lowest-lying electronic singlet and triplet potential energy surfaces (PES) for the HNO-NOH system have been investigated employing high level ab initio quantum chemical methods. The reaction energies and barriers have been predicted for two isomerization and four dissociation reactions. Total energies are extrapolated to the complete basis set limit applying focal point analyses. Anharmonic zero-point vibrational energies, diagonal Born-Oppenheimer corrections, relativistic effects, and core correlation corrections are also taken into account. On the singlet PES, the (1)HNO → (1)NOH endothermicity including all corrections is predicted to be 42.23 ± 0.2 kcal mol(-1). For the barrierless decomposition of (1)HNO to H + NO, the dissociation energy is estimated to be 47.48 ± 0.2 kcal mol(-1). For (1)NOH → H + NO, the reaction endothermicity and barrier are 5.25 ± 0.2 and 7.88 ± 0.2 kcal mol(-1). On the triplet PES the reaction energy and barrier including all corrections are predicted to be 7.73 ± 0.2 and 39.31 ± 0.2 kcal mol(-1) for the isomerization reaction (3)HNO → (3)NOH. For the triplet dissociation reaction (to H + NO) the corresponding results are 29.03 ± 0.2 and 32.41 ± 0.2 kcal mol(-1). Analogous results are 21.30 ± 0.2 and 33.67 ± 0.2 kcal mol(-1) for the dissociation reaction of (3)NOH (to H + NO). Unimolecular rate constants for the isomerization and dissociation reactions were obtained utilizing kinetic modeling methods. The tunneling and kinetic isotope effects are also investigated for these reactions. The adiabatic singlet-triplet energy splittings are predicted to be 18.45 ± 0.2 and 16.05 ± 0.2 kcal mol(-1) for HNO and NOH, respectively. Kinetic analyses based on solution of simultaneous first-order ordinary-differential rate equations demonstrate that the singlet NOH molecule will be difficult to prepare at room temperature, while the triplet NOH molecule is viable with respect to isomerization and dissociation reactions up to 400 K. Hence, our theoretical findings clearly explain why (1)NOH has not yet been observed experimentally.     

NO3-+Cl2→ClONO2+Cl-反应势能面和势能阱

采用密度泛函理论B3LYP方法和6-311+G(d)基组, 计算构建离子-分子气相反应NO3-+Cl2→ClONO2+Cl-的三维势能面. 三维反应势能面证明该反应没有过渡态和势能垒, 但是存在一个深达-55.0 kJ/mol的势能阱(以氯气分子和硝酸根离子相隔无穷远为参量). 在势能阱底部, 有个化合物(O2NOClCl)- 称为势阱化合物, 依赖于势能阱而稳定存在. 理论红外光谱预测低温红外光谱能检测该势阱化合物. 低温条件下, 该反应由热力学控制, 反应产物是势阱化合物(O2NOClCl)-. 当温度升高, 该反应由动力学控制, 势阱化合物(O2NOClCl)-不稳定, 发生分解反应, 重新生成NO3-和Cl2. 研究结果可用来解释低温时ClONO2与Cl-气相反应不能产生Cl2的原因.     

Ab initio chemical kinetic study on Cl + ClO and related reverse processes

The reaction of ClO with Cl and its related reverse processes have been studied theoretically by ab initio quantum chemical and statistical mechanical calculations. The geometric parameters of the reactants, products, and transition states are optimized by both UMPW1PW91 and unrestricted coupled-cluster single and double excitation (UCCSD) methods with the 6-311+G(3df) basis set. The potential energy surface has been further refined (with triple excitations, T) at the UCCSD(T)/6-311+G(3df) level of theory. The results show that Cl(2) and O ((3)P) can be produced by chlorine atom abstraction via a tight transition state, while ClOCl ((1)A(1)) and ClClO ((1)A') can be formed by barrierless association processes with exothermicities of 31.8 and 16.0 kcal/mol, respectively. In principle the O ((1)D) atom can be generated with a large endothermicity of 56.9 kcal/mol; on the other hand, its barrierless reaction with Cl(2) can readily form ClClO ((1)A'), which fragments rapidly to give ClO + Cl. The rate constants of both forward and reverse processes have been predicted at 150-2000 K by the microcanonical variational transition state theory (VTST)/Rice-Ramsperger-Kassel-Marcus (RRKM) theory. The predicted rate constants are in good agreement with available experimental data within reported errors.     

Conformational energies for 2-substituted butanes

The conformational free energies for some 2-substituted butanes where X = F, Cl, CN, and CCH were calculated using G3-B3, CBS-QB3, and CCSD(T)/6-311++G(2d,p) as well as other theoretical levels. The above methods gave consistent results with free energies relative to the trans conformers as follows: X = CCH, g+ = 0.77 +/- 0.05 kcal/mol. g- = 0.88 +/- 0.05 kcal/mol; X = CN, g+ = 0.85 +/- 0.05 kcal/mol, g- = 0.75 +/- 0.05 kcal/mol; X = Cl, g+ = 0.70 +/- 0.05 kcal/ml, g- = 0.80 +/- 0.05 kcal/mol; and X = F, g+ = 0.53 +/- 0.05 kcal/mol, g- = 0.83 +/- 0.05 kcal/mol. The conformational free energies also were estimated using the observed liquid phase IR spectra and intensities calculated using B3LYP/6-311++G** and MP2/6-311++G**. The rotational free energy profiles for all of the compounds were estimated at the G3-B3 level.     

硝基甲烷异构化反应势能面的ab initio研究

在B3LYP/6-311+ +G(2d,2p)水平上,优化得到硝基甲烷CH3NO2的10种异构体和23个异构化反应过渡态,并用G2MP2方法进行了单点能计算.根据计算得到的G2MP2相对能量,探讨了CH3NO2势能面上异构化反应的微观机理.研究表明,反应初始阶段的CH3NO2异构化过程具有较高的能垒,其中CH3NO2的两个主要异构化反应通道,即CH3NO2→CH3ONO和CH3NO2→CH2N(O)OH的活化能分别为270.3和267.8 kJ/mol,均高于CH3NO2的C-N键离解能.因而,从动力学角度考虑, CH3NO2的异构化反应较为不利.     

Thinking out of the black box: accurate barrier heights of 1,3-dipolar cycloadditions of ozone with acetylene and ethylene

Accurate barriers for the 1,3-dipolar cycloadditions of ozone with acetylene and ethylene have been determined via the systematic extrapolation of ab initio energies within the focal point approach of Allen and co-workers. Electron correlation has been accounted for primarily via coupled cluster theory, including single, double, and triple excitations, as well as a perturbative treatment of connected quadruple excitations [CCSD, CCSD(T), CCSDT, and CCSDT(Q)]. For the concerted [4 + 2] cycloadditions, the final recommended barriers are DeltaH(0K) = 9.4 +/- 0.2 and 5.3 +/- 0.2 kcal mol(-1) for ozone adding to acetylene and ethylene, respectively. These agree with recent results of Cremer et al. and Anglada et al., respectively. The reaction energy for O3 + C2H2 exhibits a protracted convergence with respect to inclusion of electron correlation, with the CCSDT/cc-pVDZ and CCSDT(Q)/cc-pVDZ values differing by 2.3 kcal mol-1. Recommended enthalpies of formation (298 K) for cycloadducts 1,2,3-trioxole and 1,2,3-trioxolane are +32.8 and -1.6 kcal mol(-1), respectively. Popular composite ab initio approaches [CBS-QB3, CBS-APNO, G3, G3B3, G3(MP2)B3, G4, G4(MP3), and G4(MP2)] predict a range of barrier heights for these systems. The CBS-QB3 computed barrier for ozone and acetylene, DeltaH(0K) = 4.4 kcal mol(-1), deviates by 5 kcal mol(-1) from the focal point value. CBS-QB3 similarly underestimates the barrier for the reaction of ozone and ethylene, yielding a prediction of only 0.7 kcal mol(-1). The errors in the CBS-QB3 results are significantly larger than mean errors observed in application to the G2 test set. The problem is traced to the nontransferability of MP2 basis set effects in the case of these reaction barriers. The recently published G4 and G4(MP2) approaches perform substantially better for O3 + C2H2, predicting enthalpy barriers of 9.0 and 8.4 kcal mol(-1), respectively. For the prediction of these reaction barriers, the additive corrections applied in the majority of the composite approaches considered lead to worse agreement with the reference focal point values than would be obtained relying only on single point energies evaluated at the highest level of theory utilized within each composite method.     

Isomerization pathways from the norbornadiene to the cycloheptatriene radical cation by opening a bridgehead-methylene bond: a theoretical investigation

Three skeletal rearrangement channels for the norbornadiene (N*+) to the 1,3,5-cycloheptatriene (CHT*+) radical cation conversion, initialized by opening a bridgehead-methylene bond in N*+, are investigated using the quantum chemical B3LYP, MP2 and CCSD(T) methods in conjunction with the 6-311 +G(d,p) basis set. Two of the isomerizations proceed through the norcaradiene radical cation (NCD*+), either through a concerted path (N*+ - NCD*+), or by a stepwise mechanism via a stable intermediate (N*+ - I1 - NCD*+). At the CCSD(T)/6-311 +G(d,p)//B3LYP/6-311 +G(d,p) level, the lowest activation energy, 28.9 kcal mol(-1), is found for the concerted path whereas the stepwise path is found to be 2.3 kcal mol(-1) higher. On both pathways, NCD*+ rearranges further to CHT*+ with significantly less activation energy. The third channel proceeds from N*+ through I1 and then directly to CHT*+, with an activation energy of 37.1 kcal mol(-1). The multi-step channel reported earlier by our group, which proceeds from N*+ to CHT*+ via the quadricyclane and the bicyclo[2.2.1]hepta-2-ene-5-yl-7-ylium radical cations, is 4.6 kcal mol(-1) lower than the most favorable path of the present study. If the methylene group is substituted with C(CH3)2, however, the concerted path is estimated to be 5.6 kcal mol(-1) lower than the corresponding substituted multi-step path at the B3LYP/6-311+(d,p) level. This shows that substitution of particular positions can have dramatic effects on altering reaction barriers in the studied rearrangements. We also note that identical energies are computed for CHT*+ and NCD*+ whereas, in earlier theoretical investigations, the former was reported to be 6-17 kcal mol(-1) more stable than the latter. Finally, a bent geometry is obtained for CHT*+ with MP2/6-311 +G(d,p) in contradiction with the planar conformation reported for this cation in earlier computational studies.     

Transition state structure and energetics of the N(2)O + X (X = Cl,Br) reactions

The structural and vibrational properties of the transition state of the N(2)O + X (X = Cl,Br) reactions have been characterized by ab initio methods using density functional theory. We have employed Becke's hybrid functional (B3LYP), and transition state optimizations were performed with 6-31G(d), 6-311G(2d,2p), 6-311+G(3d,2p), and 6-311+G(3df,2p) basis sets. For the chlorine atom reaction the coupled-cluster method (CCSD(T)) with 6-31G(d) basis set was also used. All calculations resulted in transition state structures with a planar cis arrangement of atoms for both reactions. The geometrical parameters of transition states at B3LYP are very similar, and the reaction coordinates involve mainly the breaking of the N-O bond. At CCSD(T)/6-31G(d) level a contribution of the O-Cl forming bond is also observed in the reaction coordinate. In addition, several highly accurate ab initio composite methods of Gaussian-n (G1, G2, G3), their variations (G2(MP2), G3//B3LYP), and complete basis set (CBS-Q, CBS-Q//B3LYP) series of models were applied to compute reaction energetics. All model chemistries predict exothermic reactions. The G3 and G2 methods result in the smallest deviations from experiment, 1.8 and 0 kcal mol(-1), for the enthalpies of reaction for N(2)O reaction with chlorine and bromine, respectively. The G3//B3LYP and G1 methods perform best among the composite methods in predicting energies of the transition state, with a deviation of 1.9 and 3.0 kcal mol(-1), respectively, in the activation energies for the above processes. However, the B3LYP/6-311+G(3df,2p) method gives smaller deviations of 0.4 and -1.0 kcal mol(-1), respectively. The performance of the methodologies applied in predicting transition state energies was analyzed.     

Mechanism of HCS + O2 reaction: hydrogen- or oxygen-transfer?

In spite of the potential importance of the HCS radical in both combustion and interstellar processes, its chemical reactivity has not been tackled previously. In the present paper, the oxidation reaction of the HCS radical is theoretically investigated for the first time at the CCSD(T)/6-311++G(3df,2p)//BH&HLYP/6-311++G(d,p)+ZPVE and Gaussian-3//B3LYP/6-31G(d) levels. It is shown that the most feasible pathway is the O2 addition to the HCS radical forming the intermediate SC(H)OO which can undergo a subsequent O-extrusion leading to SC(H)O + 3O. This features an indirect O-transfer mechanism with the overall barrier of 4.4 and 3.5 kcal mol(-1), respectively, at the two levels. However, formation of the H-transfer product CS + HO2 is kinetically much less feasible, i.e., the direct mechanism has barriers of 14.3 and 8.7 kcal mol(-1), whereas the indirect mechanism has barriers of 12.6 and 10.7 kcal mol(-1), respectively. This result is in sharp contrast to the analogous HCO + O2 reaction, where the direct (with a barrier of 2.98 kcal mol(-1)) and indirect (2.26 kcal mol(-1)) H-transfer processes are highly competitive over the indirect O-transfer process (the least endothermicity is 19.9 kcal mol(-1)). The possible explanations and implications of the present results are provided.     

A Possible Reaction Channel from BrONO to BrNO2

A possible isomeriztion channel from BrONO( bromine nitrite) to BrNO2 (nitryl bromide) is predicted by means of MP2 and QCISD(T) (single-point) methods.The channel is a direct bromine abstraction reaction from BrONO molecule by NO2 in which the forward reaction barrier is 89.30 kJ/mol at final UQCISD(T)/6-311 G(2df)//UMP2/6-311G(d) level of theory with zero-point energies included,The result can explian the available experiments very well.     

Aromatic dienophiles. 1. A theoretical study of an inverse-electron demand Diels-Alder reaction between 2-aminopyrrole and 1,3,5-triazine

This study is devoted to a detailed theoretical study of an inverse-electron demand Diels-Alder reaction (IDA) with 1,3,5-triazine as the diene and 2-aminopyrrole 1A(alpha) as the dienophile, which is a key step in a cascade reaction for the one-pot synthesis of purine analogues. Geometries were optimized with the B3LYP/6-31G* method and energies were evaluated with the MP2/6-311++G** method. This IDA reaction occurs through a stepwise mechanism, where the first step corresponds to the nucleophilic attack of 2-aminopyrrole to triazine to form a zwitterionic intermediate, which is in equilibrium with a neutral intermediate through a hydrogen transfer process, followed by a rate-determining ring-closure step. It is shown that the B3LYP method significantly overestimates the activation energy, whereas the MP2 method offers a reasonable activation barrier of 27.9 kcal/mol in the gas phase. The solvation effect has been studied by the PCM model. In DMSO, the calculated activation energy of the IDA reaction is decreased to 24.0 kcal/mol with a strong endothermicity of 17.4 kcal/mol due to the energy penalty of transforming two aromatic reactants into a nonaromatic IDA adduct. The possible stepwise [2+2] pathway is ruled out based on its higher activation and reaction energies than those of the [4+2] pathway. By comparing the IDA reactions of triazine to 2-aminopyrrole and pyrrole, we address two crucial roles of the alpha-amino substituent in lowering activation and reaction energies and controlling the reaction regiochemistry.     

Keto<==>enol, imine<==>enamine, and nitro<==>aci-nitro tautomerism and their interrelationship in substituted nitroethylenes. Keto, imine, nitro, and vinyl substituent effects and the importance of H-bonding

Tautomeric isomers and conformers of 2-nitrovinyl alcohol (1), 2-nitrovinylamine (2), and 1-nitro-propene (3) are reported at the MP2 and B3LYP levels of theory, using the 6-31G* basis set, with energy evaluation at B3LYP/6-311+G** and G2MP2. The nitroalkenes are the global minima on their respective potential energy surfaces. The barriers for the concerted 1,5-H transfer to the corresponding nitronic acids amount to only 5.0 kcal/mol for 1, 13.2 kcal/mol for 2, and a sizable 37.8 kcal/mol for 3. Whereas the aci-nitro tautomer of 2-nitrovinyl alcohol is easily accessible, beta-iminonitronic acid has little kinetic stability. H-bonding is a strong stabilizing factor in these nitroalkenes, estimated at 7.0 and 3.7 kcal/mol for the OH and NH2 derivatives, respectively, while its stabilization in their nitronic acids amounts to as much as 13 kcal/mol. The H-bonds are evident from the very short O...H and N...H distances and are characterized by bond critical points. The NO2 substituent effect of about 11.4 kcal/mol at G2MP2 on both the classical keto <==> enol and imine <==> enamine tautomeric processes stabilizes the nitroethylene derivatives. The keto, imine, and vinyl substituent effects at G2MP2 on the nitro <==> aci-nitro tautomeric process are also determined as are their pi-resonance components. The substituents have a large influence on the ionization energies of the nitroethylene derivatives.     

Ab Initio Study on the Potential Energy Surfaces of B4 Cluster

The singlet and triplet potential energy surfaces (PES) for the isomerization and dissociation reactions of B₄ isomers have been investigated using ab initio methods. Ten B4 isomers have been identified and of these 10 species, 4 have not been reported previously. The singlet rhombic structure ¹1 is found to be the most stable on the B₄ surface, in agreement with the results of previous reports. Several isomerization and dissociation pathways have been found. On the singlet PES, the linear ¹3b can rearrange to rhombus ¹1 directly, while ¹3c rearranges to ¹1 through two‐step reactions involving a cyclic intermediate. On the triplet PES, the capped triangle structure ³2 undergoes ring opening to the linear isomer ³3b with a barrier of 34.8 kcal/mol and 44.9 kcal/mol, and the latter undergoes ring closure to the square structure ³1 with a barrier of 30.4 kcal/mol and 33.0 kcal/mol at the MP4/6–311+G(3df)//MP2/6–311G(d) and CCSD/aug‐cc‐pVTZ//MP2/6–311G(d) levels of theory, respectively. The direct decomposition of singlet B₄ yielding to B₃+B is shown to have a large endothermicity of 87.3 kcal/mol (CCSD), and that producing 2B₂ to have activation energy of 133.4 kcal/mol (CCSD).     

Theoretical study on the structures, isomerization and stability of SiC3H isomers

The calculations of the geometry optimizations, energies, dipole moments, vibrational spectra, rotational constants, and isomerization of doublet SiC₃H species were performed using density functional theory and ab initio methods. Four types of isomers, a total of 18 minima, connected by 16 interconversion transition states, were located on the potential energy surface (PES) at the B3LYP/6-311G (d, p) level. More accurate energies were obtained at the CCSD(T)/6-311G(2df, 2p), and G3(MP2) levels. With the highest isomerization barrier, the lowest lying structure, linear A1 possesses the largest kinetic stability. Besides, the isomerization barriers of A2, A4, C2, F1, F4 and F5 are over 10 kcal/mol, and these isomers are also considered to be higher kinetically stable. Other isomers cannot be kinetically stabilized with considerably low isomerization barriers. Investigation on the bonding properties and the computations of vibrational spectra, dipole moments, and rotational constants for SiC₃H isomers are helpful for understanding their structures and also valuable for their detections in the interstellar space and laboratory.     

Ab initio studies of the conformations of ethynyl formate, cyano formate and related ethynyl and cyano compounds

The optimized geometries, relative free energies and related thermodynamic properties, harmonic frequencies, and dipole moments have been calculated at the HF and MP2 levels for ethynyl formate (1a), ethynyl acetate (1b), cyano formate, HCO₂CN (1c), cyano acetate (1d), S-ethynyl thioformate (2a), S-ethynyl thioacetate (2b), S-cyano thioformate (2c), S-cyano thioacetate (2d), N-ethynylformamide (3a), N-ethynylacetamide (3b), N-cyanoformamide (3c), and N-cyanoacetamide (3d) with the gaussian 98 program. For ethynyl formate, the calculation for 25 °C at the MP2/6-311++G(df,pd) level predicts that the Z isomer is more stable by 1.23 kcal/mol. For S-ethynyl thioformate, calculations at the MP2/6-311++G(2d,2p) level predict that the E isomer is favored by 0.71 kcal/mol at 25 °C. The E isomers of N-ethynylformamide and N-ethynylacetamide were found at all levels to be more stable than the Z isomers at 25 °C. For cyano formate and cyano acetate, calculations at the MP2/6-311++G(df,pd) level predict that the Z isomers are more stable at 25 °C by 1.50 and 2.72 kcal/mol, respectively. At this level and temperature, the Z isomers of 2c, 2d, 3c, and 3d are predicted to have free energies of 0.46, −0.07, 1.22, and 2.28 kcal/mol, respectively, relative to the E conformations. Z to E free-energy barriers at 25 °C of 8.63, 10.64, 17.63, 7.39, and 14.03 kcal/mol were calculated for 1a, 2a, 3a, 1c, and 3c at the HF/6-311G(d,p) level, and at the HF/6-311+G(d,p) level, the free-energy barrier for 2c was 7.08 kcal/mol.     

A new scheme for determining the intramolecular seven-membered ring N-H...O=C hydrogen-bonding energies of glycine and alanine peptides

In this paper a new scheme was proposed to calculate the intramolecular hydrogen-bonding energies in peptides and was applied to calculate the intramolecular seven-membered ring N-H...O=C hydrogen-bonding energies of the glycine and alanine peptides. The density-functional theory B3LYP6-31G(d) and B3LYP6-311G(d,p) methods and the second-order Moller-Plesset perturbation theory MP26-31G(d) method were used to calculate the optimal geometries and frequencies of glycine and alanine peptides and related structures. MP26-311++G(d,p), MP26-311++G(3df,2p), and MP2/aug-cc-pVTZ methods were then used to evaluate the single-point energies. It was found that the B3LYP6-31G(d), MP26-31G(d), and B3LYP6-311G(d,p) methods yield almost similar structural parameters for the conformers of the glycine and alanine dipeptides. MP2/aug-cc-pVTZ predicts that the intramolecular seven-membered ring N-H...O=C hydrogen-bonding strength has a value of 5.54 kcal/mol in glycine dipeptide and 5.73 and 5.19 kcal/mol in alanine dipeptides, while the steric repulsive interactions of the seven-membered ring conformers are 4.13 kcal/mol in glycine dipeptide and 6.62 and 3.71 kcal/mol in alanine dipeptides. It was also found that MP26-311++G(3df,2p) gives as accurate intramolecular N-H...O=C hydrogen-bonding energies and steric repulsive interactions as the much more costly MP2/aug-cc-pVTZ does.     

Cheletropic decomposition of cyclic nitrosoamines revisited: the nature of the transition states and a critical role of the ring strain

The cheletropic decompositions of 1-nitrosoaziridine (1), 1-nitroso-Delta(3)-pyrroline (2), 7-nitroso-7-azabicyclo[2.2. 1]hepta-2,5-diene (3), and 6-nitroso-6-azabicyclo[2.1.1]hexa-4-ene (4) have been studied theoretically using high level ab initio computations. Activation parameters of the decomposition of nitrosoaziridine 1 were obtained experimentally in heptane (DeltaH()(298) = 18.6 kcal mol(-)(1), DeltaS()(298) = -7.6 cal mol(-)(1) K(-)(1)) and methanol (20.3 kcal mol(-)(1), 0.3 cal mol(-)(1) K(-)(1)). Among employed theoretical methods (B3LYP, MP2, CCD, CCSD(T)//CCD), the B3LYP method in conjunction with 6-31+G, 6-311+G, and 6-311++G(3df,2pd) basis sets gives the best agreement with experimental data. It was found that typical N-nitrosoheterocycles 2-4 which have high N-N bond rotation barriers (>16 kcal mol(-)(1)) extrude nitrous oxide via a highly asynchronous transition state with a planar ring nitrogen atom. Nitrosoaziridine 1, with a low rotation barrier (<9 kcal mol(-)(1)) represents a special case. This compound can eliminate N(2)O via a low energy linear synperiplanar transition state (DeltaH()(298) = 20.6 kcal mol(-)(1), DeltaS()(298) = 2.5 cal mol(-)(1) K(-)(1)). Two higher energy transition states are also available. The B3LYP activation barriers of the cheletropic fragmentation of nitrosoheterocycles 2-4 decrease in the series: 2 (58 kcal mol(-)(1)) > 3 (18 kcal mol(-)(1)) > 4 (12) kcal mol(-)(1). The relative strain energies increase in the same order: 2 (0 kcal mol(-)(1)) < 3 (39 kcal mol(-)(1)) < 4 (52 kcal mol(-)(1)). Comparison of the relative energies of 2-4 and their transition states on a common scale where the energy of nitrosopyrroline 2 is assumed as reference indicates that the thermal stability of the cyclic nitrosoamines toward cheletropic decomposition is almost entirely determined by the ring strain.