Cooperative effect of hydrogen bonds in the complexes of aliphatic alcohols with proton acceptors in chloroform

Effect of solvation on the frequency of stretching vibrations of O-H groups of aliphatic alcohols in complexes with acetonitrile, dimethyl sulfoxide, diethyl ether, pyridine, tetrahydrofuran, and triethylamine in various media was studied by IR spectroscopy. We found that the strength of hydrogen bonds in the studied complexes increased considerably at the interaction with chloroform as a solvent. The contribution of cooperative effect was estimated. The enthalpies of cooperative effect in the complexes consisting of three different molecules are estimated for the first time.     

Hydrogen bonded complexes—II: The lactam-phenol ratios and structures in lactam-phenol complexes

Lactams form solid, isolable complexes with the three dihydroxybenzenes, 0,0'-biphenol and 2,3-naphthalenediol, in which lactam-phenol ratios of 1:1, 2:1, 3:1 and even 4:3 were observed. These ratios can be determined with precision by a gas chromatography method which is described. IR spectroscopy indicates that the bonds linking lactam and phenol are O-H...O and/or N-H...O hydrogen bonds Structures for the complexes are suggested.     

A TD-DFT study on the hydrogen bonding of three esculetin complexes in electronically excited states: strengthening and weakening

Time-dependent density functional theory (TD-DFT) method was used to study the excited-state hydrogen bonding of three esculetin complexes formed with aprotic solvents. The geometric structures, molecular orbitals (MOs), electronic spectra and the infrared (IR) spectra of the three doubly hydrogen-bonded complexes formed by esculetin and aprotic solvents dimethylsulfoxide (DMSO), tetrahyrofuran (THF) and acetonitrile (ACN) in both ground state S(0) and the first singlet excited state S(1) were calculated by the combined DFT and TD-DFT methods with the COSMO solvation model. Two intermolecular hydrogen bonds can be formed between esculetin and the aprotic solvent in each hydrogen-bonded complex. Based on the calculated bond lengths of the hydrogen bonds and the groups involved in the formation of the intermolecular hydrogen bonds in different electronic states, it is demonstrated that one of the two hydrogen bonds formed in each hydrogen-bonded complex is strengthened while the other one is weakened upon photoexcitation. Furthermore, it is found that the strength of the intermolecular hydrogen bonds formed in the three complexes becomes weaker as the solvents change from DMSO, via THF, to ACN, which is suggested to be due to the decrease of the hydrogen bond accepting (HBA) ability of the solvents. The spectral shifts of the calculated IR spectra further confirm the strengthening and weakening of the intermolecular hydrogen bonds upon the electronic excitation. The variations of the intermolecular hydrogen bond strengths in both S(0) and S(1) states are proposed to be the main reasons for the gradual spectral shifts in the absorption and fluorescence spectra both theoretically and experimentally.     

New thermochemical parameter for describing solvent effects on IR stretching vibration frequencies. Communication 2. Assessment of cooperativity effects

Solvent effects on O-H stretching vibration frequency of methanol in hydrogen bond complexes with different bases, CH3OH...B, have been investigated by FTIR spectroscopy. Using chloroform as a solvent results in strengthening of CH3OH...B hydrogen bonding due to cooperativity between CH3OH...B and Cl3CH...CH3OH bonds. A method is proposed for quantifying the hydrogen bond cooperativity effect. The determined cooperativity factors take into account all specific interactions of the solute in proton-donor solvents. In addition, a method of estimation of cooperativity factors Ab and AOX in system (CH3OH)2...B is proposed. It is demonstrated that in such systems, the cooperativity factor of the OH...B bond decreases and that of the OH...O bond increases with increasing the acceptor strength of the base B. The obtained results are in a good agreement with the data obtained previously from matrix-isolation FTIR spectroscopy.     

Crystal and molecular structure of 1,1-quasigermatranediol-1,1-dihydroxy-2,8-dioxa-5-azagermocane

By X-ray diffraction the crystal and molecular structure of quasigermatranediol (HO)₂Ge(OCH₂CH₂)₂NH at 155 K is determined. By quantum chemical method using second-order Møller-Plesset perturbation theory (MP2) and a split-valence 6-311++G(d,p) basis set with polarization and diffuse functions for all types of atoms, the structural parameters of this molecule are calculated. In the crystal, the quasigermatranediol molecules are arranged in columns due to O-H...O and N-H...O hydrogen bonds of medium strength. The columns are linked together via weak O-H...O and N-H...O hydrogen bonds. By calorimetry, the phase transition in a crystal of quasigermatranediol at 150–145 K is revealed.     

Three-dimensional supramolecular architecture based on 4,4′-methylene-bis(benzenamine) and aromatic carboxylic acid guests: Synthons cooperation, robust motifs and structural diversity

The two-component solid forms involving 4,4??-methylene-bis(benzenamine) included both salts and co-crystals, while 4,4??-methylene-bis(benzenamine) crystallized exclusively as a salt, in agreement with the differences in the pK _a values. Many of the crystal structures displayed either the neutral or the ionic form of the carboxylic acid-amino heterosynthon, and the similarity in crystal structures between the neutral and the ionized molecules makes the visual distinction between a salt and co-crystal dependent on the experimental location of the acidic proton. A variety of supramolecular hydrogen bonded motifs involving interactions between the aza molecules and carboxylic acid groups are observed rather than just the O-H??N/O-H??O motif. The motifs are identical in all the two compounds analyzed showing the robustness of these supramolecular synthons. In all adducts, recognition between the constituents is established through either N-H??O and/or O-H??O/O-H??N pairwise hydrogen bonds. In all adducts, COOH functional groups available on 1 and 2 interact with the N-donor compounds. The COOH moieties in 1 forms only single N-H??O hydrogen bonds, whereas in 2, it forms pairwise O-H??N/N-H??O hydrogen bonds. The supramolecular architectures are elegant and simple, with stacking of networks in 2, but a rather complex network with a threefold interpenetration pattern was found in 1. Thermal stability of these compounds has been investigated by thermogravimetric analysis (TGA) of mass loss.     

Synthesis and structure of ruthenium(IV) complexes featuring N-heterocyclic ligands with an N-H group as the hydrogen-bond donor: hydrogen interactions in solution and in the solid state

The synthesis and characterization of novel ruthenium(IV) complexes [Ru(η(3):η(3)-C(10)H(16))Cl(2)L] [L = 3-methylpyrazole (2b), 3,5-dimethylpyrazole (2c), 3-methyl-5-phenylpyrazole (2d), 2-(1H-pyrazol-5-yl)phenol (2e), 6-azauracile (3), and 1H-indazol-3-ol (4)] are reported. Complex 2e is converted to the chelated complex [Ru(η(3):η(3)-C(10)H(16))Cl(κ(2)-N,O-2-(1H-pyrazol-3-yl)phenoxy)] (5) by treatment with an excess of NaOH. All of the ligands feature N-H, O-H, or C═O as the potential hydrogen-bonding group. The structures of complexes 2a-2c, 2e, 3, and 5 in the solid state have been determined by X-ray diffraction. Complexes 2a-2c and 3, which contain the pyrazole N-H group, exhibit intra- and intermolecular hydrogen bonds with chloride ligands [N-H···Cl distances (?): intramolecular, 2.30-2.78; intermolecular, 2.59-2.77]. Complexes 2e and 3 bearing respectively O-H and C═O groups also feature N-H···O interactions [intramolecular (2e), 2.27 ?; intermolecular (3), 2.00 ?]. Chelated complex 5, lacking the O-H group, only shows an intramolecular N-H···Cl hydrogen bonding of 2.42 ?. The structure of complex 3, which turns out to be a dimer in the solid state through a double intermolecular N-H···O hydrogen bonding, has also been investigated in solution (CD(2)Cl(2)) by NMR diffusion studies. Diffusion-ordered spectroscopy experiments reveal an equilibrium between monomer and dimer species in solution whose extension depends on the temperature, concentration, and coordinating properties of the solvent. Preliminary catalytic studies show that complex 3 is highly active in the redox isomerization of the allylic alcohols in an aqueous medium under very mild reaction conditions (35 °C) and in the absence of a base.     

Hydrogen Bonding Assembled 3D Supramolecular Structures Formed by 5-Amino-2,4,6-triiodoisophthalic Acid and N-Heterocyclic Aromatic Ligands

Three salts constructed by 5-amino-2,4,6-triiodoisophthalic acid(ATIPA) with N-heterocycles aromatic coformers such as pyridine tetrazolium, tetramethylpyraziiie and cyanuric acid were synthesized by slowing evaporation of solvent. X-Ray single crystal analysis shows that hydrogen protons of the carboxyl groups transfer to nitrogen atoms of the N-heterocyclic coformers to form N-H…0 hydrogen bonds in all the three compounds. A huge amount of H-bonds play significant role in tlie construction of these compounds and all of them generate 3D structures through strong O-H…N, O-H…O, N-H…O and weak C-H…O hydrogen bonds. Moreover, solvent water molecules are indispensable in the formation of compounds 1 and 3, which constitutes different supramolecular synthons to bridge individual molecules and chains to form stable structures. In addition, these crystal structures were further characterized by themiogravimetric analysis and infrared spectroscopy.     

Ab initio and density functional studies of cooperative hydrogen bonding in calix[4]-and calix[6]arenes

The cone conformation of C ₄ symmetry is shown by the Hartree-Fock method (3-21G basis) to be the predominant conformer of calix[4]arene; the compressed cone of C ₂ symmetry is the major conformer of calix[6]arene. Using quantum chemical methods we calculated hydrogen bond cleavage energies for calix[4]-(ab initio and density functional methods) and calix[6]arene (ab initio), and also for the complex of calix[4]arene with carbon disulfide. These energies along with structural data point to the cooperative effect of hydrogen bonds. The results of these studies provided an explanation to the greater conformational lability of calix[6]arene compared with calix[4]arene molecules. It is also predicted that the nucleophilic substitution reaction involving calix[6]arene in the presence of weak bases and in aprotic solvents, as well as in the gas phase, will occur via diastereomeric transition states.     

低阶煤中氢键作用的色散校正密度泛函理论研究

本研究以苯酚…苯酚、苯酚…苯、苯酚…二苯醚、苯酚…喹啉和苯甲酸…苯甲酸为对象，采用色散校正的密度泛函理论分别研究褐煤中自缔合OH、OH-π、OH-醚O、OH-N和COOH-COOH之间形成的氢键。此外，还研究了氢键供体中取代基(CH₃-、CH₃O-、OH-、NH₂-、COOH-和NO₂-)对氢键的影响。对上述复合物进行了几何优化，并计算了能量、Mulliken电荷分布及振动频率。从优化的结构中可以看出上述复合物之间都存在氢键，所有复合物中O-H键键长都比苯酚中自由羟基的长，这表明这些复合物之间存在相互作用。其中，羧酸…羧酸复合物中O-H键的键长最长。此外，通过Mulliken电荷分布可看出上述复合物之间存在电荷转移。基于振动频率分析，所有的O-H键伸缩振动都发生了红移，尤其是羧酸…羧酸和苯酚…喹啉复合物，这可为煤中羟基振动的红外光谱分析提供依据。根据键能不同氢键强度按以下顺序依次递减：COOH-COOH>OH-N > 自缔合OH≈OH-醚O > OH-π，这与振动频率的分析结果一致。此外，不同取代基对氢键作用的影响不同。     

几种二醇与非质子溶剂相互作用的红外光谱研究

测定了1，2-乙二醇、1，2-丙二醇、1，4-丁二醇和1，6-己二醇在CCl4中分别与十几种非质子溶剂相互作用的红外光谱，通过考察频率位移的变化，定量地研究了二醇分子内氢键与分子间氢键的协同效应．在四氯化碳介质中，乙二醇、1，2-丙二醇和1，4-丁二醇体系中存在明显的氢键协同效应。利用红外光谱数据，估算了常温下二醇分子内缔体与非质子溶剂的交叉缔合常数，其数值大于一元正链醇与相应溶剂的交叉缔合常数．     

Quenching of n,pi*-excited states in the gas phase: variations in absolute reactivity and selectivity

The quenching of the n,pi*-excited azoalkane 2,3-diazabicyclo[2.2.2]oct-2-ene by 19 heteroatom-containing electron and hydrogen donors, that is, amines, sulfides, ethers, and alcohols, was investigated in the gas phase. Deuterium isotope effects were measured for 9 selectively deuterated derivatives. The data support the involvement of an excited charge-transfer complex, that is, an exciplex, for tertiary amines and sulfides, and a competitive direct hydrogen transfer from the C-H bonds of ethers or from the N-H or O-H bonds of secondary and primary amines or alcohols. The recently observed "inverted" solvent effect for the fluorescence quenching of azoalkanes by amines and sulfides in solution is supported by the observed rate constants in the gas phase, which are substantially larger than those in solution. A more pronounced inverted solvent effect for the weaker electron-donating sulfides and a presumably faster exciplex deactivation result in a switch-over in absolute reactivity relative to tertiary amines in the gas phase. Most importantly, the kinetic data demonstrate that the reactivity of the strongly dipolar O-H and N-H bonds in photoinduced hydrogen abstraction reactions shows a larger decrease upon solvation than that of the less polar C-H bonds. The azoalkane data are compared with previous studies on quenching of n,pi*-triplet-excited ketones in the gas phase.     

Solvent effect on H-bond cooperativity factors in ternary complexes of methanol, octan-1-ol, 2,2,2-trifluoroethanol with some bases

Cooperative hydrogen bonds in ternary complexes (ROH)(2)...B (ROH-alcohols; B-bases) formed in pure bases (B) and solutions in n-hexane, carbon tetrachloride, benzene and 1,2-dichloroethane were studied by FTIR spectroscopy. Based on the observations, the authors were able to propose an original method of evaluating solvent effects on cooperativity factors in the complexes. Frequencies of cooperative hydrogen bonds OH...B (nu(b)) were determined for ternary complexes of pyridine with aliphatic alcohols (methanol, octan-1-ol) and for 2,2,2-trifluoroethanol with three different bases (acetonitrile, diethyl ether, tetrahydrofuran). The solvent shifts of nu(b) were found to correlate with an empirical thermochemical parameter of the solvent, S(VW). The cooperativity factors were determined for the complexes (ROH)(2)...B in all studied media. It has been found that the cooperativity factors are almost independent of the solvent. In addition, a method was proposed of estimating the frequencies and cooperativity factors for ternary complexes (ROH)(2)...B in the gas phase. It has been found that in gas phase the cooperativity factors are practically the same as in condensed media.     

Studying the Iodide Ion Solvation in Water–Dimethyl Sulfoxide Mixtures by the Method of Volta Potential Differences

Real and chemical thermodynamic parameters of resolvation of the iodide ion in water–dimethyl sulfoxide mixtures at 298 K are determined by the method of Volta potential differences. The real parameters, as those of chloride and bromide ions earlier studied in similar solvents are positive, which is due to the restructuring of a surface layer at the solution/gas phase interface. An analysis of chemical energies of the iodide ion resolvation shows that anions that are capable of forming hydrogen bonds with proton-donor solvents are weakly solvated in aprotic solvents.     

Stabilization of germanium(IV) aquafluorocompounds in host-guest type complexes with crown ethers. synthesis,crystal structure and ir spectra of the complexes [(GeF5-H2O)2-(H2-1,10-Diaza-l 8-Crown-6)] and [(trans-GeF4 · 2H2O) · 18-Crown-6·2H2O]

Stable products have been obtained from the interaction of GeO₂-HF solution with 18-membered crown ethers, 1,10-diaza-l8-crown-6 and 18-crown 6. Complexes were characterized by X-ray analysis and IR spectroscopy. Both Ge(IV) aquafluorocompounds are isostructural with their Si analogues. It was established that in the host-guest type complexes the germanium moiety as a central atom has been stabilized in the form of octahedral complexes. The host-guest interaction occurs by means of O-H(W)...O_cr, OH...F and N-H...F hydrogen bonds.     

Theoretical studies on the binding affinities of β-cyclodextrin to small molecules and monosaccharides

Equilibrium geometries and electronic structures of complexes between β-cyclodextrin (β-CD) and some small molecules as well as monosaccharides were investigated by Austin Model 1 (AM1) to obtain binding energy of the complexes. It was indicated that β-CD could bind the structurally similar solvent molecules and monosaccharides because of the negative binding energy of the complexes, and especially could show the chiral binding ability to monosaccharides with more hydroxyl groups, due to its chiral characteristics. The complexes were stabilized by the hydrogen bonding between β-CD and guests. Based on the AM1 optimized geometries, the IR spectra were calculated by AM1 method. Vibration frequencies of O-H bonds in the guests were red-shifted owing to the weakening of the O-H bonds with the formation of the complexes.     

Solvent effects on 17O nuclear magnetic shielding: N-methylformamide in polar and apolar solutions

The solvent effect on ¹⁷O isotropic shielding was computed by different methods: the polarizable continuum model and a mixed approach, including a few real solvent molecules treated as the solute. The experimental data show that the behavior of protic and aprotic solvents is markedly different: we found that the continuum approach describes well the observed shielding at various dielectric constants for aprotic solvents, while the mixed procedure is needed when hydrogen bonds to the magnetic centre are present.Contribution to the Jacopo Tomasi Honorary Issue     

Density Functional Theory Study on Interaction between Catechin and Thymine

The interacting patterns and mechanism of the catechin and thymine have been investigated with the density functional theory Becke's three-parameter nonlocal exchange functional and the Lee, Yang, and Parr nonlocal correlation functional (B3LYP) method by 6-31+G*basis set. Thirteen stable structures for the catechin-thymine complexes have been found which form two hydrogen bonds at least. The vibrational frequencies are also studied at the same level to analyze these complexes. The results indicated that catechin interactedwith thymine by three different hydrogen bonds as N-H…O、C-H…O、O-H…O and the complexes are mainly stabilized by the hydrogen bonding interactions. Theories of atoms in molecules and natural bond orbital have been adopted to investigate the hydrogen bondsinvolved in all systems. The interaction energies of all complexes have been corrected for basis set superposition error, which are from -18.15 kJ/mol to -32.99 kJ/mol. The results showed that the hydrogen bonding contribute to the interaction energies dominantly. The corresponding bonds stretching motions in all complexes are red-shifted relative to that of the monomer, which is in agreement with experimental results.     

The effect of intramolecular interactions on hydrogen bond acidity

DFT calculations on a range of molecules containing intramolecular hydrogen bonds are reported, with a view to establishing how intramolecular hydrogen bonding affects their intermolecular interactions. It is shown that properties such as the energy of the intramolecular H-bond are unrelated to the ability to form external H-bonds. Conversely, several properties of complexes with a reference base correlate well with an experimental scale of H-bond acidity, and accurate predictive models are determined. A more detailed study, using electrostatic and overlap properties of complexes with a reference base, is used to predict the location, as well as strength, of hydrogen bond acidity. The effects of intramolecular hydrogen bonding on acidity can be seen not just on O-H and N-H, where acidity is greatly reduced, but also on certain C-H groups, which in some cases become the primary source of acidity.     

Exploring unusual antioxidant activity in a benzoic acid derivative: a proposed mechanism for citrinin

A mechanism is proposed for the unusual antioxidant activity in citrinin based on computed O-H bond dissociation enthalpies (BDE). These data suggest that citrinin itself is not the active species, but rather a pair of hydrated Michael addition products consisting of substituted 2,6-dihydroxy benzoic acids. These diastereomers act as radical scavengers via O-H bond dissociation with computed BDE's ranging from 78.9-80.9 kcal/mol for the active groups present. These data represent an unusually facile O-H bond dissociation for a phenol containing a strongly electron withdrawing group. This atypical reactivity arises from an intramolecular network of hydrogen bonds that both stabilize the incipient radical and facilitate extended delocalization through atoms external to the aromatic ring. The additional influence of stereochemistry on BDE is computed to be 2.0 kcal/mol. Data presented are for gas phase molecules, but solvents are unlikely to strongly modify these results since most polar groups are involved in intramolecular hydrogen bonds and thus less available for association with solvent. Citrinin and the Michael addition products are likely too toxic for use as antioxidants in organisms but this study clearly identifies specific reaction sites in the active form, thus guiding rational design of synthetic derivatives with more favorable biocompatibility.