Ionization and appearance potentials in organic chemistry. I—energetic aspects of the mass spectra of stereoisomeric 4-substituted N-alkyl-2-methyldecahydroquinol-4-ols

The ionization potentials for the stereoisomers of trans-fused 1,2-dimethyl- and 1-ethyl-2-methyl-4-R-decahydroquinol-4-ols (R?C?CH, CH?CH₂ or C₂H₅) and the appearance potentials for the [M–CH₃]⁺ and [M–C₂H₅]⁺ ions (loss of 2-CH₃ and 4-C₂H₅ groups potential, respectively) were measured by using the electron impact method. The ionization and appearance potential for [M–CH₃]⁺ are always lower for the isomers with the axial 2-CH₃ group. For the C-2 epimers, the difference between the appearance potentials for the [M–CH₃]⁺ ion values is likely to be equal to the enthalpy differences between the ground states of the epimers and the dissociation energy differences between the axial and equatorial C₂–CH₃ bonds. The appearance potentials for [M–C₂H₅]⁺ for the C-4 epimers possessing the 4-C₂H₅ group were very similar. At the same time, the appearance potentials for the [M–CH₃]⁺ ions were lower for less stable epimers which had an axial 4-C₂H₅ group.     

Potentiel d'ionisation,potentiel d'apparition et courbes d'ionisation differentielle pour les 1-2 dimethylcyclohexanes CIS et Trans

The molecular ionisation and appearance potentials of several ions have been determined for the two cis and trans 1-2 dimethylcyclohexanes using the Energy Distribution Difference (EDD) technique. The differences between the ionization efficiency curves for the ions [M—CH₃]^+. and [M—2CH₃]^+. tend to prove that the rearrangements give rise to cyclobutenic ions.     

Loss of methyl from [H2CC(OH)?CH3]+˙ ions prepared by electron impact ionization of unstable 2-hydroxypropene

Unstable 2-hydroxpropene was prepared by retro-Diels-Alder decomposition of 5-exo-methyl-5-norbornenol at 800°C/2 × 10^?6 Torr. The ionization energy of 2-hydroxypropene was measured as 8.67±0.05 eV. Formation of [C₂H₃O]⁺ and [CH₃]⁺ ions originating from different parts of the parent ion was examined by means of ¹³C and deuterium labelling. Threshold-energy [H₂C?C(OH)? CH₃]^+˙ ions decompose to CH₃CO⁺+CH₃^˙ with appearance energy AE(CH₃CO⁺) = 11.03 ± 0.03 eV. Higher energy ions also form CH₂?C?OH⁺ + CH₃ with appearance energy AE(CH₂?C?OH⁺) = 12.2–12.3 eV. The fragmentation competes with hydrogen migration between C(1) and C(3) in the parent ion. [C₂H₃O]⁺ ions containing the original methyl group and [CH₃]⁺ ions incorporating the former methylene and the hydroxyl hydrogen atom are formed preferentially, compared with their corresponding counterparts. This behaviour is due to rate-determining isomerization [H₂C?C(OH)? CH₃]^+˙ →[CH₃COCH₃]^+˙, followed by asymmetrical fragmentation of the latter ions. Effects of internal energy and isotope substitution are discussed.     

Multiple ionization,charge separation and charge stripping reactions involving polycyclic aromatic compounds

The 70 eV electron ionization mass spectra of polycyclic aromatic compounds are characterized by the presence of relatively stable multiply charged molecular ions [M]ⁿ⁺ (n=2–4). When generated from the compounds benzene, napthalene, anthracene, phenanthrene, 2,3-benzanthracene, 1,2-benzanthracene, chrysene, 9,10-benzophenanthrene and pyrene, the relative abundances of the multiply charged ions increase dramatically with the number of rings. These compounds form multiply charged molecular ions (n=2, 3) which undergo unimolecular decompositions indicative of considerable ionic rearrangement. The main charge separation processes observed here [M]²⁺→m₁⁺+m₂⁺, [M]³⁺˙→m₃⁺+m→+m₄²⁺) involve, in almost every case, one or more of the products [CH₃]⁺, [C₂H₃]⁺˙ and [C₃H₃]⁺. This suggests the existence of preferred structures amongst the metastable parent ions. Information on the relative importance of the various fragmentation pathways is presented here along with translational energy release data. Some tentative structural information about the metastable ions has been inferred from the translational energy release on the assumption that the released energy is due primarily to coulombic repulsion within the transition state structure. For the triply charged ions these interpretations have necessitated the use of a coulombic repulsion model which takes account of an extra charge. Vertical ionization energies for the process [M]ⁿ⁺+G→[M](ⁿ⁺¹)+G+e^? (charge stripping) have also been determined where possible for n=1 and 2 and the results from these experiments allow the derivation of simple empirical equations which relate successive ionization energies for the formation of [M]²⁺ and [M]³⁺˙ to the appearance energy of [M]⁺˙.     

Experimentally determined and calculated values of the energies required to form doubly charged ions of the bromomethanes CH3Br,CH2Br2 and CHBr3

Two experimental techniques were used to determine the double ionization energies of CH₃Br, CH₂Br₂ and CHBr₃. In one, these energies were measured directly by double-charge-transfer spectroscopy. In the other, charge stripping of [CH₃Br]⁺, [CH₂Br₂]⁺ and [CHBr₃]⁺ ions was investigated and the ionization energies of the singly charged ions were measured. The double ionization energies of the molecules obtained by adding known single ionization energies of the molecules to the single ionization energies of the ions were in good agreement with those determined by double-charge-transfer spectroscopy. The relevant mean values from the two techniques were 28.9 ± 0.5, 27.5 ± 0.5 and 29.1 ± 0.5 eV for the double ionization energy of CH₃Br, CH₂Br₂ and CHBr₃, respectively. The results of ab initio calculations using second-order Møller-Plesset perturbation theory were in good agreement with the observed double ionization energies; they were consistently slightly lower than the experimental values.     

Selective reagents in chemical ionization mass spectrometry: Tetramethylsilane with ethers

Chemical ionization mass spectra of several ethers obtained with He/(CH₃)₄Si mixtures as the reagent gases contain abundant [M + 73]⁺ adduct ions which identify the relative molecular mass. For the di-n-alkyl ethers, these [M + 73]⁺ ions are formed by sample ion/sample molecule reactions of the fragment ions, [M + 73 ? C_nH_2n]⁺ and [M + 73 ? 2CnH_2n]⁺. Small amounts of [M + H]⁺ ions are also formed, predominantly by proton transfer reactions of the [M + 73 ? 2CnH_2n]⁺ or [(CH₃)₃SiOH₂]⁺ ions with the ethers. The di-s-alkyl ethers give no [M + 73] ⁺ ions, but do give [M + H]⁺ ions, which allow the determination of the relative molecular mass. These [M + H]⁺ ions result primarily from proton transfer reactions from the dominant fragment ion, [(CH₃)₃SiOH₂]⁺ with the ether. Methyl phenyl ether gives only [M + 73]⁺ adduct ions, by a bimolecular addition of the trimethylsilyl ion to the ether, not by the two-step process found for the di-n-alkyl ethers. Ethyl phenyl ether gives [M + 73]⁺ by both the two-step process and the bimolecular addition. Although the mass spectra of the alkyl etherr are temperature-dependent, the sensitivities of the di-alkyl ethers and ethyl phenyl ether are independent of temperature. However, the sensitivity for methyl phenyl ether decreases significantly with increasing temperature.     

Chemical Ionization—A Mass-Spectrometric Analytical Procedure of Rapidly Increasing Importance

The mode of ionization of a molecule has a strong influence on its behavior in the mass spectrometer and thus on the information that can be obtained from its mass spectrum. In chemical ionization a reagent gas, e.g. methane, is first ionized by electron impact. The ions formed in ion-molecule reactions, in particular [CH₅]⁺, [C₂H₅]⁺, and [C₃H₅]⁺, then react “chemically” with the substrate M in fast acid/base type reactions to form ions of the type [MH]⁺, [M(C₂H₅)]⁺, etc., which subsequently fragment to various extents. Alternatively, chemical ionization can be effected by charge exchange, in that ions of a reagent gas, e.g. [He]^+?, react with the substrate M to form molecular ions [M]^+·. Chemical ionization can thus be conducted in a more or less mild fashion and the extent of the fragmentation can be controlled over a very wide range.     

Kinetic studies in mass spectrometry—VI: The [M ? CH3] reaction in substituted ethylbenzenes

The [M] → [M ? CH₃] reaction in a series of m- and p-X substituted ethylbenzenes has been studied by wide range electron energy kinetics and metastable ion characteristics techniques. By this approach, qualitative measures of activation evergy differences between [XC₆H₄CH₂]⁺ ions derived from m- and p-X isomer substrates have been secured, for both their formation and further decomposition. These evergy differences are consistent with (but do not prove) ion structures that have been suggested by previous work in this area, involving the use of isotope labeling, and ionization and appearance potential methods.     

Hydrogen rearrangement in molecular ions of alkyl benzenes: Appearance potentials and substituent effects on the formation of [C7H8]+ ions

The mechanism of the formation of [C₇H₈]⁺ ions by hydrogen rearrangement in the molecular ions of 1-phenylpropane and 1,3-diphenylpropane has been investigated by looking at the effects of CH₃O and CF₃ substituents in the meta and para positions on the relative abundances of the corresponding ions and on the appearance energies. The formation of [C₇H₈]⁺ ions from 1,3-diphenylpropane is much enhanced at the expense of the formation of [C₇H₇]⁺ ions by benzylic cleavage, due to the localized activation of the migrating hydrogen atom by the γ phenyl group. A methoxy substituent in the 1,3-diphenylpropane, exerts a site-specific influence on the hydrogen rearrangement, which is much more distinct than in 1-phenylpropane and related 1-phenylalkanes, the rearrangement reaction being favoured by a meta methoxy group. The mass spectrum of 1-(3-methoxyphenyl)-3-(4-trideuteromethoxyphenyl)-propane shows that this effect is even stronger than the effect of para methoxy groups on the benzylic cleavage. From measurements of appearance potentials it is concluded that the substituent effect is not due to a stabilization of the [C₇H₇X]⁺ product ions. Whereas the [C₇H₇]⁺ ions are formed directly from molecular ions of 1-phenylpropane and 1,3-diphenylpropane, the [C₇H₈]⁺ ions arise by a two-step mechanism in which the s? complex type ion intermediate can either return to the molecular ion or fragment to [C₇H₈]⁺ by allylic bond cleavage. Obviously the formation of this s? complex type ion, is influenced by electron donating substituents in specific positions at the phenyl group. This is borne out by a calculation of the ΔH_f values of the various species by thermochemical data. Thus, the relative abundances of the fragment ions are determined by an isomerization equilibrium of the molecular ions, preceding the fragmentation reaction.     

Kinetic studies in mass spectrometry–VII: Competing cleavage and rearrangement processes in molecular ion decomposition reactions

Apparently competing cleavage and rearrangement reactions in a series of molecular ions have been studied by ionization and appearance potential methods, and by determination of the electron energy dependence of both normal and metastable daughter ion peak intensities. The processes investigated were (i) [M ? CH₃] vs. [M ? CH₂O] in anisole; (ii) [M ? OC₆H₅] vs. [M ? CO] in phenyl ether; (iii) [M ? NO₂] vs. [M ? NO] in nitrobenzene; (iv) [M ? C₃H₇] vs. [M ? C₂H₄] in butyrophenone: (v) [M ? C₃H₇] vs. [M ? C₃H₆] in n-butylbenzene; (vi) [M ? CH₂OH] vs. [M ? CH₂O] in 2-phenylethanol; (vii) [M ? CH₃CO₂] vs. [M ? CH₂CO] in benzyl acetate; and (viii) [M ? C₄H₉O] vs. [M ? C₄H₇] in n-butylbenzoate. The results are interpreted in terms of k vs. E curves with very different frequency factors for the two reaction types. Appearance potentials of metastable ions for the rearrangement reactions have also been measured.     

Gas-phase protonation and methyl cation transfer from methyl halide ions

The ion-molecule reactions between [CH₃X]⁺˙ [CH₃XH] ⁺, [CH₃XCH₃]⁺ ions (X = F, Cl, Br, I) and a number of nucleophiles have been studied by ion cyclotron resonance techniques. Protonation of the nucleophiles is observed to occur from both the molecular ions [CH₃]X⁺˙ and protonated species [CH₃XH]⁺ whereas dimethylhalonium ions [CH₃XCH₃]⁺ react principally by methyl cation transfer. A notable exception occurs in methyl iodide where the molecular ions [CH₃I]⁺˙ act both as proton and methyl cation donors, whereas dimethyliodonium ions are found unreactive. The results are discussed with reference to the use of alkyl halides as reagent gases in chemical ionization experiments.     

Stereochemical effects in the electron impact mass spectra of cis–trans isomeric 1,2,3,5-tetramethylcyclohexanes and some trimethylcyclohexanes

The mass spectra of 10 isomeric trimethylcyclohexanes and six cis–trans isomeric 1,2,3,5-tetramethylcyclohexanes are discussed. The thermochemically stable isomers show a higher abundance of the [M? CH₃]⁺ ions and a lower abundance of the [M? C₂H₅]⁺ ions than the strained isomers. The log of the intensity ratio for loss of methyl and ethyl from the molecular ions correlates well with the strain energies and with the mean number of gauche arrangements of the stereoisomers.     

The study of C1?C3 monosubstituted alkyl benzenes by the inverse convolution of first differential ionization efficiency curves

The electron impact ionization efficiency curves for the parent ions and the [C₇H₇]⁺ fragment ion formed from monosubstituted alkyl benzenes (R?CH₃? n-C₃H₇) have been studied by applying the inverse convolution technique of Vogt and Pascual to the first derivative ionization efficiency curves of the ions. Ionization and appearance energies measured for the ions at threshold are in good agreement with recently published photoionization values. Structures in the ionization efficiency curves (higher energy processes) are also reported for about 4 e V above threshold. The heats of formation calculated for [C₇H₇]⁺ fragment ions obtained from toluene and ethyl benzene at threshold are equal to 864 and 865 kJ mol^?1 respectively, and are consistent with the tropylium structure. However, for the [C₇H₇]⁺ fragment ion obtained from n-propyl benzene at threshold the calculated heat of formation is equal to 923 kJ mol^?1 and probably corresponds to a benzyl structure.     

Doubly charged benzene and isomeric dications. Fragmentation energetics and charge distributions calculated by MINDO/3 molecular orbital theory

MINDO/3 calculations for singlet and triplet doubly charged benzene [C₆H₆]²⁺ are in satisfactory agreement with the experimentally determined values of the vertical double ionization energy of benzene; calculations for straight chain isomeric structures are consistent with the observed kinetic energy release on fragmentation to [C₅H₃]⁺ and [CH₃]⁺. Symmetrical doubly charged benzene ions relax to a less symmetrical cyclic structure having sufficient internal energy to fragment by ring opening and hydrogen transfer towards the ends of the carbon chain. Fragmentation of [CH₃C₄CH₃]²⁺ to [CH₃C₄]⁺ and [CH₃]⁺ is a relatively high energy process (A), whereas both (B): [CH₃CHC₃CH₂]²⁺ to [CHC₃CH₂]⁺ and [CH₃]⁺ and (C): [CH₃CHCCHCCH]²⁺ to [CHCCHCCH]⁺ and [CH₃]⁺ may be exothermic processes from doubly charged benzene. Furthermore, the calculated energy for the reverse of process (A) is less than the experimentally observed kinetic energy released, whereas larger energies for the reverse of processes B and C are predicted. Heats of formation of homologous series [HC_n]⁺, [CH₃C_n]⁺, [CH₂C_n?2CH]⁺, [CH₃C_n?2CH₂]⁺ and [CH₂?CHC_n?3CH₂]⁺ with 1 < n < 6 are calculated to aid prediction of the most stable products of fragmentation of doubly charged cations. The homologous series [CH₂C_n?2CH]⁺ is relatively stable and may account for ready fragmentation of doubly charged ions to [C_nH₃]⁺; alternatively the symmetrical [C₅H₃]⁺ ion [CHCCHCCH]⁺ may be formed. Dicoordinate carbon chains appear to be important stabilizing features for both cations and dications.     

Fragmentation of 2‐aroylbenzofuran derivatives by electrospray ionization tandem mass spectrometry

We investigated the gas‐phase fragmentation reactions of a series of 2‐aroylbenzofuran derivatives by electrospray ionization tandem mass spectrometry (ESI‐MS/MS). The most intense fragment ions were the acylium ions m/z 105 and [M+H–C₆H₆]⁺, which originated directly from the precursor ion as a result of 2 competitive hydrogen rearrangements. Eliminations of CO and CO₂ from [M+H–C₆H₆]⁺ were also common fragmentation processes to all the analyzed compounds. In addition, eliminations of the radicals •Br and •Cl were diagnostic for halogen atoms at aromatic ring A, whereas eliminations of •CH₃ and CH₂O were useful to identify the methoxyl group attached to this same ring. We used thermochemical data, obtained at the B3LYP/6‐31+G(d) level of theory, to rationalize the fragmentation pathways and to elucidate the formation of E , which involved simultaneous elimination of 2 CO molecules from B .     

Determination of elemental compositions by gas chromatography/time‐of‐flight mass spectrometry using chemical and electron ionization

Many metabolomic applications use gas chromatography/mass spectrometry (GC/MS) under standard 70 eV electron ionization (EI) parameters. However, the abundance of molecular ions is often extremely low, impeding the calculation of elemental compositions for the identification of unknown compounds. On changing the beam‐steering voltage of the ion source, the relative abundances of molecular ions at 70 eV EI were increased up to ten‐fold for alkanes, fatty acid methyl esters and trimethylsilylated metabolites, concomitant with 2‐fold absolute increases in ion intensities. We have compared the abundance, mass accuracy and isotope ratio accuracy of molecular species in EI with those in chemical ionization (CI) with methane as reagent gas under high‐mass tuning. Thirty‐three peaks of a diverse set of trimethylsilylated metabolites were analyzed in triplicate, resulting in 342 ion species ([M+H]⁺, [M–CH₃]⁺ for CI and [M]^{+ .} , [M–CH₃]^{+ .} for EI). On average, CI yielded 8‐fold more intense molecular species than EI. Using internal recalibration, average mass errors of 1.8 ± 1.6 mm/z units and isotope ratio errors of 2.3 ± 2.0% (A+1/A ratio) and 1.7 ± 1.8% (A+2/A ratio) were obtained. When constraining lists of calculated elemental compositions by chemical and heuristic rules using the Seven Golden Rules algorithm and PubChem queries, the correct formula was retrieved as top hit in 60% of the cases and within the top‐3 hits in 80% of the cases. Copyright © 2010 John Wiley & Sons, Ltd.     

Mass spectra and energetic data for the formation of the [M?CH3]+ ion of 10,10-dimethylphenylthio-silyn, -germyn and -stannyn derivatives,and of 9,9-dimethyl-thioxantene

The formation of the [M ? CH₃]⁺ ion from 10,10-dimethylphenylthio-silyn, -germyn and -stannyn derivatives as well as 9,9-dimethylthioxantene with the aid of appearance and ionization potential measurements.     

Chemical ionization and collisional activation spectra of α,β-unsaturated nitriles

A study of the chemical ionization (CI) and collisional activation (CA) spectra of a number of α, β-unsaturated nitriles has revealed that the even-electron ions such as [MH]⁺ and [MNH₄]⁺ produced under chemical ionization undergo decomposition by radical losses also. This results in the formation of M ⁺˙ ions from both [MH]⁺ and [MNH₄]⁺ ions. In the halogenated molecules losses of X˙ and HX compete with losses of H˙ and HCN. Elimination of X˙ from [MH]⁺ is highly favoured in the bromoderivative. The dinitriles undergo a substitution reaction in which one of the CN groups is replaced with a hydrogen radical and the resulting mononitrile is ionized leading to [M ? CN + 2H]⁺ under CI(CH₄) or [M ? CN + H + NH₄] and [M ? CN + H + N₂H₇]⁺ under CI(NH₃) conditions.     

Chemical ionization desorption mass spectrometry of some quaternary ammonium salts

The ammonia chemical ionization desorption spectra of N,N-dimethyl quaternary ammonium iodides in addition to high protonated molecular ion [M + H]⁺ intensity, show signals for an ion radical composed of N-methyl abstracted salt cation and ammonia [C + NH₃? CH₃]^+˙. These ions corresponding to the cation +2 show increased importance in the chemical ionization mode, using the same reagent gas. The technique of chemical ionization desorption appears suitable for the analysis of salts, and thus for the determination of the molecular weight of both anion and cation.     

Mass-analysed ion kinetic energy and collisionally induced dissociation mass spectra of clusters of acetylated xylo-oligosaecharides with protonated ammonia and methylannine

Per-O-acetylated methyl glycosides of D -xylan-type di- and trisaccharides were studied by mass-analysed ion kinetic energy (MIKE) and collisionally induced dissociation (CID) mass Spectrometry using protonated ammonia and methylamine, respectively, as reaction gases in chemical ionization (CI). The oligosaccharides form abundant cluster ions, [M + NH₄]⁺ or [M + CH₃NH₃]⁺, and the main fragmentation of these ions in the MIKE and CID spectra is the cleavage of interglycosidic linkages. Thus, CI (NH₃) or CI (CH₃NH₂) spectra in combination with the MIKE or CID spectra allow the molecular masses, the masses of monosaccharide units and the branching point in oligosaccharides to be established. In the case of disaccharides, it is possible to distinguish the (1 → 2) linkage from the other types of linkages.