Conformational Analysis of the Anti‐obesity Drug Lorcaserin in Water: How To Take Advantage of Long‐Range Residual Dipolar Couplings

The conformational state of 8‐chloro‐1‐methyl‐2,3,4,5‐tetrahydro‐1H‐3‐benzazepine hydrochloride (lorcaserin) in water has been determined on the basis of one‐bond and long‐range C? H residual dipolar coupling (RDC) data along with DFT computations and ³J_HH coupling‐constant analysis. According to this analysis, lorcaserin exists as a conformational equilibrium of two crown‐chair forms, of which the preferred conformation has the methyl group in an equatorial orientation.     

Structural studies on aryl‐substituted enaminoketones and their thio analogues. Part II. Experimental and DFT calculated carbon–carbon coupling constants,nJ(CC)'s (n = 1–3)

Spin–spin carbon–carbon coupling constants across one, two and three bonds, J(CC), have been measured for a series of aryl‐substituted Z‐s‐Z‐s‐E enaminoketones and their thio analogues. As a result, a large set, altogether 178, of J(CC)s has been obtained. It consists of 82 couplings across one bond, 31 couplings across two bonds and 65 couplings across three bonds. Independently, the DFT calculations at the B3PW91/6‐311++G(d,p)//B3PW91/6‐311++G(d,p) level yielded a set of theoretical J(CC) values. A comparison of these two sets of data gave an excellent linear correlation with parameters a and b close to ideal; a = 0.9978 which is not far from unity and b = 0.22 Hz which is close to zero. The ¹J(CC) couplings determined for the crucial fragment of the molecules, i.e. ? C?C? C?O (or ? C?C? C?S), are: ¹J(C?C) ≈ 68 Hz (67 Hz) and ¹J(C? C) = 60.5 Hz (60.0 Hz). The corresponding couplings found for the Z‐s‐Z‐s‐E isomer of the parent enaminoketone, 4‐methylamino‐but‐3‐en‐2‐one are 64.1 and 59.3 Hz, respectively. The most sensitive towards substitution of the oxygen atom by sulfur are two‐bond couplings between the α‐vinylic and aromatic C_ipso carbon atoms, which attain 12 Hz in the enaminoketone derivatives and decrease to 5 Hz in their thio analogues. Copyright © 2009 John Wiley & Sons, Ltd.     

RDC‐enhanced structure calculation of a β‐heptapeptide in methanol

Residual dipolar couplings (RDCs) are a rich source of structural information that goes beyond the range covered by the nuclear Overhauser effect or scalar coupling constants. They can only be measured in partially oriented samples. RDC studies of peptides in organic solvents have so far been focused on samples in chloroform or DMSO. Here, we show that stretched poly(vinyl acetate) can be used for the partial alignment of a linear β‐peptide with proteinogenic side chains in methanol. ¹D_CH, ¹D_NH, and ²D_HH RDCs were collected with this sample and included as restraints in a simulated annealing calculation. Incorporation of RDCs in the structure calculation process improves the long‐range definition in the backbone of the resulting 3₁₄‐helix and uncovers side‐chain mobility. Experimental side‐chain RDCs of the central leucine and valine residues are in good agreement with predicted values from a local three‐state model. Copyright © 2016 John Wiley & Sons, Ltd.     

Non‐empirical calculations of NMR indirect carbon–carbon coupling constants. Part 4: Bicycloalkanes

A systematic study of the one‐bond and long‐range J(C,C), J(C,H) and J(H,H) in the series of nine bicycloalkanes was performed at the SOPPA level with special emphasis on the coupling transmission mechanisms at bridgeheads. Many unknown couplings were predicted with high reliability. Further refinement of SOPPA computational scheme adjusted for better performance was carried out using bicyclo[1.1.1]pentane as a benchmark to investigate the influence of geometry, basis set and electronic correlation. The calculations performed demonstrated that classical ab initio SOPPA applied with the locally dense Dunning's sets augmented with inner core s‐functions used for coupled carbons and Sauer's sets augmented with tight s‐functions used for coupled hydrogens performs perfectly well in reproducing experimental values of different types of coupling constants (the estimated reliability is ca 1–2 Hz) in relatively large organic molecules of up to 11 carbon atoms. Additive coupling increments were derived for J(C,C), J(C,H) and J(H,H) based on the calculated values of coupling constants within SOPPA in the model bicycloalkanes, in reasonably good agreement with the known values obtained earlier on pure empirical grounds. Most of the bridgehead couplings in all but one bicycloalkane appeared to be essentially additive within ca 2–3 Hz while bicyclo[1.1.1]pentane demonstrated dramatic non‐additivity of ?14.5 Hz for J(C,C), +16.6 Hz for J(H,H) and ?5.5 Hz for J(C,H), in line with previous findings. Non‐additivity effects in the latter compound established at the SOPPA level should be attributed to the through‐space non‐bonded interactions at bridgeheads due to the essential overlapping of the bridgehead rear lobes which provides an additional and effective non‐bonding coupling path for the bridgehead carbons and their protons in the bicyclopentane framework. Copyright © 2003 John Wiley & Sons, Ltd.     

A theoretical structural analysis of the factors that affect 1JNH, 1hJNH and 2hJNN in N–H···N hydrogen‐bonded complexes

Calculations of ¹ J_NH, ^1h J_NH and ^2h J_NN spin–spin coupling constants of 27 complexes presenting N–H·N hydrogen bonds have allowed to analyze these through hydrogen‐bond coupling as a function of the hybridization of both nitrogen atoms and the charge (+1, 0, ? 1) of the complex. The main conclusions are that the hybridization of N atom of the hydrogen bond donor is much more important than that of the hydrogen bond acceptor. Positive and negative charges (cationic and anionic complexes) exert opposite effects while the effect of the transition states ‘proton‐in‐the‐middle’ is considerable. Copyright © 2008 John Wiley & Sons, Ltd.     

A study of NMR parameters of cyclobutenones and benzocyclobutenones

An NMR study of ketones 5–12 was undertaken to gain insight into the low electrophilicity of the carbonyl moiety of butenones 9–11. Initial IR studies on compounds 9–12 indicated that there is relatively strong double bond character (and hence low electrophilicity) in the carbonyl of saturated and unsaturated cyclobutyl ketones. The ¹³C chemical shifts confirm that the carbonyl moiety is highly conjugated with the fused benzene ring in 9, and with the olefinic linkage in 10 and 11. Partial positive charge is distributed away from the carbonyl carbon, which is also expected to lower the electrophilicity of the carbonyl carbon atoms of 9–11. One‐bond carbon–proton coupling constants (¹J_CH) depend directly on carbon hybridization. In the four‐membered ring ketones 9–12 the experimental values are larger than in cyclobutane, probably as a result of the additional strain of the extra trigonal centers in the ring. A similar trend is seen in the case of the olefinic CH in 10 and 11 (ca 175 Hz), for which the coupling constant is larger than for the corresponding carbon in cyclobutene. ¹J_CC values between the ring carbon atoms of the cyclobutenones are some 20% lower than in the models—a bigger difference than in cyclobutanes, again indicative of the increased ring strain. The very low 42.4 Hz coupling between C‐1 and C‐2 in 9 might well indicate a measure of bond localization. ²J_CC and ³J_CC values are also discussed. Copyright © 2003 John Wiley & Sons, Ltd.     

One‐bond 13C–13C coupling constants in alkyl‐substituted cyclopropenes: experimental and theoretical studies

Measurements of one‐bond carbon–carbon coupling constants, ¹J(C, C), were performed for two series of compounds, alkyl‐substituted cyclopropenes and cyclopropanes. The experimental data were complemented by a set of DFT‐calculated J couplings for the parent cyclopropene ( 1 ), its methyl and silyl derivatives and, additionally, for 1‐methylcyclobutene ( 3 ), 1‐methylcyclopentene ( 4 ) and 1‐methylcyclohexene ( 5 ) and good agreement was observed between the experimental and the calculated data; all the trends are perfectly maintained, including a dramatic decrease in the couplings across endocyclic single bonds in cyclopropene and its derivatives, and a significant decrease in the corresponding couplings in cyclobutene. Using the data obtained, the s characters of the carbon hybrid orbitals involved in the formation of the cyclopropene were calculated. The results clearly show that the ring closure and the related strain exerted upon the cyclopropene molecule only slightly disturb the electron structure of the double bond. The s character of the corresponding carbon orbital is 0.314 in cyclopropene vs the theoretical value of 0.333 in ethene. This is at variance with the endo‐ and exocyclic single bonds, where the s characters of the orbitals forming the endocyclic single bonds are much smaller than those of the bonds in the open‐chain compounds, i.e. 0.229 (C‐1 and/or C‐2) and 0.166 (C‐3). The s values calculated for the exocyclic CH bonds are 0.334 for C‐3 and 0.456 for C‐1 and/or C‐2. Copyright © 2002 John Wiley & Sons, Ltd.     

1H, 13C and 15N NMR spectral assignments for new triazapentalene derivatives

Mesomeric heteropentalene betaines are conjugated fused polyheterocyclic structures that represent interesting intermediates for organic synthesis. Five such structures, containing at least four nitrogen atoms and various substituents, have been characterized by ¹H, ¹³C and ¹⁵N NMR. We report, apparently for the first time, nitrogen NMR data and coupling information on such systems. Inter‐ring long‐range correlations across five bonds with ¹⁵N (⁵J_HN) and up to seven bonds with ¹³C (⁶J_HC and ⁷J_HC) were observed in HSQC experiments. The incorporation of an electron‐withdrawing substituent such as NO₂ was observed to cause an increase in the magnitude of the remote couplings and deshielding of nearby protons, carbons and on all nitrogen atoms of the structure, including remote ones situated on other cycles. Copyright © 2009 John Wiley & Sons, Ltd.     

The mutual effect of a carbonyl polar bond and an endocyclic oxygen on the 1JC‐F coupling constant of fluorinated six‐membered rings

The ¹J_C‐F coupling constant can be useful to probe the conformational landscape of organofluorine compounds and the intramolecular interactions governing the stereochemistry of these compounds. Neighboring oxygen electron lone pairs and a carbonyl group relative to a C─F bond affect this coupling constant in an opposite way, and therefore, analysis of the interactions involving these entities simultaneously indicates which effect dominates ¹J_C‐F. Spin–spin coupling constant calculations for a series of fluorinated tetrahydropyrans, cyclohexanones, and dihydropyran‐3‐ones indicated that an electrostatic/dipolar interaction between the C─F and C═O bonds is more important than the steric interaction between the C─F bond and the oxygen electron lone pairs. An intuitive consequence of such outcome is that this interaction not only drives the coupling constant but can also be taken into account when aiming at the stereochemical control of functionalized organofluorine compounds.     

Theoretical study of bifurcated hydrogen bonding effects on the 1J(N,H), 1hJ(N,H), 2hJ(N,N) couplings and 1H, 15N shieldings in model pyrroles

According to the density functional theory calculations, the X···H···N (X?N, O) intramolecular bifurcated (three‐centered) hydrogen bond with one hydrogen donor and two hydrogen acceptors causes a significant decrease of the ^1hJ(N,H) and ^2hJ(N,N) coupling constants across the N? H···N hydrogen bond and an increase of the ¹J(N,H) coupling constant across the N? H covalent bond in the 2,5‐disubsituted pyrroles. This occurs due to a weakening of the N? H···N hydrogen bridge resulting in a lengthening of the N···H distance and a decrease of the hydrogen bond angle at the bifurcated hydrogen bond formation. The gauge‐independent atomic orbital calculations of the shielding constants suggest that a weakening of the N? H···N hydrogen bridge in case of the three‐centered hydrogen bond yields a shielding of the bridge proton and deshielding of the acceptor nitrogen atom. The atoms‐in‐molecules analysis shows that an attenuation of the ^1hJ(N,H) and ^2hJ(N,N) couplings in the compounds with bifurcated hydrogen bond is connected with a decrease of the electron density ρ_H···N at the hydrogen bond critical point and Laplacian of this electron density ?²ρ_H···N. The natural bond orbital analysis suggests that the additional N? H···X interaction partly inhibits the charge transfer from the nitrogen lone pair to the σ*_{N? H} antibonding orbital across hydrogen bond weakening of the ^1hJ(N,H) and ^2hJ(N,N) trans‐hydrogen bond couplings through Fermi‐contact mechanism. An increase of the nitrogen s‐character percentage of the N? H bond in consequence of the bifurcated hydrogen bonding leads to an increase of the ¹J(N,H) coupling constant across the N? H covalent bond and deshielding of the hydrogen donor nitrogen atom. Copyright © 2010 John Wiley & Sons, Ltd.     

Efficient measurement of the sign and the magnitude of long‐range proton‐carbon coupling constants from a spin‐state‐selective HSQMBC‐COSY experiment

A spin state‐selective Heteronuclear Single‐Quantum Multiple‐Bond Connectivities (HSQMBC‐COSY) experiment is proposed to measure the sign and the magnitude of long‐range proton‐carbon coupling constants (ⁿJ(CH); n > 1) either for protonated or for non‐protonated carbons in small molecules. The simple substitution of the selective 180° ¹H pulse in the original selHSQMBC pulse scheme by a hard one allows the simultaneous evolution of both proton‐proton and proton‐carbon coupling constants during the refocusing period and enables a final COSY transfer between coupled protons. The successful implementation of the IPAP principle leads to separate mixed‐phase α/β cross‐peaks from which ⁿJ(CH) values can be easily measured by analyzing their relative frequency displacements in the detected dimension. Copyright © 2012 John Wiley & Sons, Ltd.     

A new phosphorothioic triamide structure: P(S)[NHCH2C6H5]3

The structure of N,N′,N′′‐tribenzylphosphorothioic triamide, C₂₁H₂₄N₃PS, (I), and analysis of the bond‐angle sums at the N atoms for this compound, and for 74 structures with a P(S)[N]₃ skeleton and the N atom in a three‐coordinate geometry found in the Cambridge Structural Database [CSD; Groom & Allen (2014). Angew. Chem. Int. Ed. 53 , 662–671], are reported. For (I), the bond‐angle sum at one of the N atoms [359 (1)°] shows a nearly planar configuration, while the other two show a nonplanar geometry with bond‐angle sums of 342 (1) and 347 (1)°. The location of the atoms attached to the nonplanar N atoms suggests an anti orientation of the corresponding lone electron pairs (LEPs) on these N atoms with respect to the P=S group. For 74 structures with a P(S)[N]₃ skeleton and with the N atom in a three‐coordinate geometry, the bond‐angle sums at the N atoms were found to be in the range 293–360°. Among 307 such three‐coordinate N atoms, 39% (120 N atoms) have bond‐angle sums in the range 359–360°, in accordance with sp² hybridization, and 45% (138 N atoms) have bond‐angle sums in the range 352–359°, with hybridization close to sp². For the orientation of the LEP with respect to the P=S group, the anti orientation was found to be a general rule for N atoms, with the corresponding bond‐angle sums deviating by more than 8° from the planar value of 360°. In the title structure, the S atom takes part in intermolecular (N—H...)(N—H...)S hydrogen bonds, connecting the molecules into extended chains parallel to the b axis. The co‐operation of one N atom in an N—H...S hydrogen bond as an H‐atom donor, and in an N—H...N hydrogen bond as an acceptor, is a novel feature of the crystal structure.     

Spying on the boron–boron triple bond using spin–spin coupling measured from 11B solid-state NMR spectroscopy

There is currently tremendous interest in the previously documented example of a stable species exhibiting a boron–boron triple bond (Science, 2012, 336, 1420). Notably, it has recently been stated using arguments based on force constants that this diboryne may not, in reality, feature a boron–boron triple bond. Here, we use advanced solid-state NMR and computational methodology in order to directly probe the orbitals involved in multiple boron–boron bonds experimentally via analysis of ¹¹B–¹¹B spin–spin (J) coupling constants. Computationally, the mechanism responsible for the boron–boron spin–spin coupling in these species is found to be analogous to that for the case of multiply-bonded carbon atoms. The trend in reduced J coupling constants for diborenes and a diboryne, measured experimentally, is in agreement with that known for alkenes and alkynes. This experimental probe of the electronic structure of the boron–boron multiple bond provides strong evidence supporting the originally proposed nature of the bonds in the diboryne and diborenes, and demonstrates that the orbitals involved in boron–boron bonding are equivalent to those well known to construct the multiple bonds between other second-row elements such as carbon and nitrogen.     

Computational NMR coupling constants: Shifting and scaling factors for evaluating 1JCH

Optimized shifting and/or scaling factors for calculating one‐bond carbon–hydrogen spin–spin coupling constants have been determined for 35 combinations of representative functionals (PBE, B3LYP, B3P86, B97‐2 and M06‐L) and basis sets (TZVP, HIII‐su3, EPR‐III, aug‐cc‐pVTZ‐J, ccJ‐pVDZ, ccJ‐pVTZ, ccJ‐pVQZ, pcJ‐2 and pcJ‐3) using 68 organic molecular systems with 88 ¹J_CH couplings including different types of hybridized carbon atoms. Density functional theory assessment for the determination of ¹J_CH coupling constants is examined, comparing the computed and experimental values. The use of shifting constants for obtaining the calculated coupling improves substantially the results, and most models become qualitatively similar. Thus, for the whole set of couplings and for all approaches excluding those using the M06 functional, the root‐mean‐square deviations lie between 4.7 and 16.4 Hz and are reduced to 4–6.5 Hz when shifting constants are considered. Alternatively, when a specific rovibrational contribution of 5 Hz is subtracted from the experimental values, good results are obtained with PBE, B3P86 and B97‐2 functionals in combination with HIII‐su3, aug‐cc‐pVTZ‐J and pcJ‐2 basis sets. Copyright © 2013 John Wiley & Sons, Ltd.     

The structural dependence of two-bond 13C?13C coupling constants

Two-bond ¹³C? ¹³C coupling constants are discussed on the basis of INDO-SCPT calculations. The dependence of ²J(CC) on bond angle variation and on methyl substitution is evaluated, and it is shown that ²J(CC) depends linearly on the bond orbital s-character product of the terminal carbon atoms, whereas no systematic relationship with the hybridization of the central carbon atom was obtained. Alkyl group substituent effects are found to be additive. The coupling constants of a number of cyclobutane derivatives are discussed on the basis of these structural relationships; it is shown that the experimental findings can be interpreted quite consistently by assuming a dual-pathway coupling mechanism.     

New Experimental Insight into the Nature of Metal−Metal Bonds in Digallium Compounds: J Coupling between Quadrupolar Nuclei

Multiple bonding between atoms is of ongoing fundamental and applied interest. Here, we report a multinuclear (¹H, ¹³C, and ⁷¹Ga) solid‐state magnetic resonance spectroscopic study of digallium compounds which have been proposed, albeit somewhat controversially, to contain single, double, and triple Ga?Ga bonds. Of particular relevance to the nature of these bonds, we have carried out two‐dimensional ⁷¹Ga J/D‐resolved NMR experiments which provide a direct measurement of J(⁷¹Ga,⁷¹Ga) spin–spin coupling constants across the gallium?gallium bonds. When placed in the context of clear‐cut experimental data for analogous singly, doubly, and triply bonded carbon spin pairs or boron spin pairs, the ⁷¹Ga NMR data clearly support the notion of a different bonding paradigm in the gallium systems. Our findings are consistent with an increasing role across the purported gallane–gallene–gallyne series for classical and/or slipped π‐type bonding orbitals.     

Selective J‐resolved HMBC,an efficient method for measuring heteronuclear long‐range coupling constants

An efficient pulse sequence for measuring long‐range C? H coupling constants (J_{C? H}) named selective J‐resolved HMBC has been developed by replacing a ¹H 180° pulse with a selective ¹H 180° pulse and the HMBC pulse scheme with the constant time (CT) HMBC employed in the J‐resolved HMBC pulse sequence that we reported previously. The novel pulse sequence providing only long‐range J_{C? H} cross peaks for easy and accurate analysis enables to overcome disadvantages of the previous HMBC‐based pulse sequences (J‐resolved HMBC‐1) along with maintaining high sensitivity. The efficiency of measuring long‐range J_{C? H} using the proposed pulse sequence has been demonstrated in applications to the complicated natural products, portmicin and monazomycin. Copyright © 2009 John Wiley & Sons, Ltd.     

Direct and indirect substituent effects on 1J(CH) in vinyl derivatives and related compounds

The variation in the one–bond couplings ¹J(CH) in vinyl derivatives with substituent has been examined. For the geminal proton ¹J correlates very badly with substituent electronegativity but extremely well with σ_I, if conjugating substituents are excluded. In the case of halogen substituents the marked stereospecificity of ¹J(CH) for the cis and trans protons can be rationalised in terms of an intrinsic dependence of π_CH on the dihedral angle between the coupling atoms and the perturbing substituent, with an additional positive increment to the cis coupling due to direct interaction of the substituent non-bonding electrons or to orbital circulation of the substituent electrons. The intrinsic specificity of β-substituent effects on ¹J(CH) is also found in analogous compounds containing C?N and C?O bonds.     

SQ—SQ experiment for determination of relative signs of small nJ(29Si,13C) couplings in a wide variety of silicon compounds

A modification of double quantum–zero quantum (DQ—ZQ) experiment termed single‐quantum–single‐quantum (SQ—SQ) experiment is proposed for the determination of relative signs and magnitudes of coupling constants. The modification replaces the multiple‐quantum evolution period by two synchronously incremented single‐quantum periods. Similarly to DQ—ZQ experiment, the sequence requires only two coupling constants that share one nucleus, the one to be measured and a reference one. This allows application to a larger variety of molecular fragments than traditional 2D sequences producing E.COSY or TROSY pattern. The SQ—SQ experiment eliminates the effects of some other couplings during t₁, thereby simplifying the 2D pattern and increasing the signal intensity in comparison with DQ—ZQ experiment. The presented sequence is particularly designed for the determination of silicon–carbon coupling constants across several bonds at natural abundance using silicon–hydrogen couplings as the sign reference. The signs of silicon–carbon couplings across two and three bonds in dimethyl(phenoxy)silane which cannot be detected by traditional methods and which have not yet been determined are established by the SQ—SQ method here: ²J(Si,C) = +2.2 Hz and ³J(Si,C) = ?1.7 Hz. Copyright © 2009 John Wiley & Sons, Ltd.     

Non‐empirical calculations of NMR indirect carbon–carbon coupling constants: 3. Polyhedranes

High‐level ab initio calculations of carbon–carbon coupling constants were carried out in tetrahedrane, prismane and cubane using the SOPPA (Second‐Order Polarization Propagator Approach) computational scheme, in good agreement with available experimental data. It was found that SOPPA performs perfectly well in combination with Dunning's correlation‐consistent basis sets augmented with inner core functions; however, no improvement was observed on adding tight s‐functions. The utmost importance of electronic correlation effects decreasing the total values of computed J(C,C) in the title compounds by a factor of ～2.0–2.5 was found. Unknown values of J(C,C) in the title polyhedranes were predicted with high reliability and the latter were treated in terms of s‐characters of carbon–carbon bonds based on the additive scheme of coupling pathways. All three compounds under study showed decreased s‐characters of their carbon–carbon bonds, which is the result of their remarkable steric strain. Copyright © 2003 John Wiley & Sons, Ltd.