Cooperativity between the Halogen Bond and the Hydrogen Bond in H3N⋅⋅⋅XY⋅⋅⋅HF Complexes (X,Y=F,Cl, Br)

Ab initio calculations are used to provide information on H₃N???XY???HF triads (X, Y=F, Cl, Br) each having a halogen bond and a hydrogen bond. The investigated triads include H₃N???Br₂‐HF, H₃N???Cl₂???HF, H₃N???BrCI???HF, H₃N???BrF???HF, and H₃N???ClF???HF. To understand the properties of the systems better, the corresponding dyads are also investigated. Molecular geometries, binding energies, and infrared spectra of monomers, dyads, and triads are studied at the MP2 level of theory with the 6‐311++G(d,p) basis set. Because the primary aim of this study is to examine cooperative effects, particular attention is given to parameters such as cooperative energies, many‐body interaction energies, and cooperativity factors. The cooperative energy ranges from ?1.45 to ?4.64 kcal mol^?1, the three‐body interaction energy from ?2.17 to ?6.71 kcal mol^?1, and the cooperativity factor from 1.27 to 4.35. These results indicate significant cooperativity between the halogen and hydrogen bonds in these complexes. This cooperativity is much greater than that between hydrogen bonds. The effect of a halogen bond on a hydrogen bond is more pronounced than that of a hydrogen bond on a halogen bond.     

Density functional theory study on the reactions of X− with CH3SY (X,Y = F,Cl, Br,I)

Gas‐phase anionic reactions X^? + CH₃SY (X, Y = F, Cl, Br, I) have been investigated at the level of B3LYP/6‐311+G (2df,p). Results show that the potential energy surface (PES) of gas‐phase reactions X^? + CH₃SY (X, Y = Cl, Br, I) has a quadruple‐well structure, indicating an addition–elimination (A–E) pathway. The fluorine behaves differently in many respects from the other halogens and the reactions F^? + CH₃SY (Y = F, Cl, Br, I) correspond to deprotonation instead of substitution. The gas‐phase reactions X^? + CH₃SF (X = Cl, Br, I), however, follow an A–E pathway other than the last two out going steps (COM2 and PR) that proceeds via a deprotonation. The polarizable continuum model (PCM) has been used to evaluate the solvent effects on the energetics of the reactions X^? + CH₃SY (X, Y = Cl, Br, I). The PES is predicted to be unimodal in the solvents of high polarity. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

[N⋅⋅⋅I+⋅⋅⋅N] Halogen‐Bonded Dimeric Capsules from Tetrakis(3‐pyridyl)ethylene Cavitands

Two [N???I⁺???N] halogen‐bonded dimeric capsules using tetrakis(3‐pyridyl)ethylene cavitands with different lower rim alkyl chains are synthesized and analyzed in solution and the gas phase. These first examples of symmetrical dimeric capsules making use of the iodonium ion (I⁺) as the main connecting module are characterized by ¹H NMR spectroscopy, diffusion ordered NMR spectroscopy (DOSY), electrospray ionization mass spectrometry (ESI‐MS), and ion mobility‐mass spectrometry (TW‐IMS) experiments. The synthesis and effective halogen‐bonded dimerization proceeds through analogous dimeric capsules with [N???Ag⁺???N] binding motifs as the intermediates as evidenced by the X‐ray structures of (CH₂Cl₂)₂@[ 3 a ₂?Ag₄?(H₂O)₂?OTs₄] and (CH₂Cl₂)₂@[ 3 a ₂?Ag₄?(H₂O)₄?OTs₄], two structurally different capsules.     

Theoretical study on the interactions of halogen‐bonds and pnicogen‐bonds in phosphine derivatives with Br2, BrCl,and BrF

The MP2 ab initio quantum chemistry methods were utilized to study the halogen‐bond and pnicogen‐bond system formed between PH₂X (X = Br, CH₃, OH, CN, NO₂, CF₃) and BrY (Y = Br, Cl, F). Calculated results show that all substituent can form halogen‐bond complexes while part substituent can form pnicogen‐bond complexes. Traditional, chlorine‐shared and ion‐pair halogen‐bonds complexes have been found with the different substituent X and Y. The halogen‐bonds are stronger than the related pnicogen‐bonds. For halogen‐bonds, strongly electronegative substituents which are connected to the Lewis acid can strengthen the bonds and significantly influenced the structures and properties of the compounds. In contrast, the substituents which connected to the Lewis bases can produce opposite effects. The interaction energies of halogen‐bonds are 2.56 to 32.06 kcal·mol^?1; The strongest halogen‐bond was found in the complex of PH₂OH???BrF. The interaction energies of pnicogen‐bonds are in the range 1.20 to 2.28 kcal·mol^?1; the strongest pnicogen‐bond was found in PH₂Br???Br₂ complex. The charge transfer of lp(P) ? σ*(Br? Y), lp(F) ? σ*(Br? P), and lp(Br) ? σ*(X? P) play important roles in the formation of the halogen‐bonds and pnicogen‐bonds, which lead to polarization of the monomers. The polarization caused by the halogen‐bond is more obvious than that by the pnicogen‐bond, resulting in that some halogen‐bonds having little covalent character. The symmetry adapted perturbation theory (SAPT) energy decomposition analysis showes that the halogen‐bond and pnicogen‐bond interactions are predominantly electrostatic and dispersion, respectively.     

The Prominent Enhancing Effect of the Cation–π Interaction on the Halogen–Hydride Halogen Bond in M1⋅⋅⋅C6H5X⋅⋅⋅HM2

We designed M¹???C₆H₅X???HM² (M¹=Li⁺, Na⁺; X=Cl, Br; M²=Li, Na, BeH, MgH) complexes to enhance halogen–hydride halogen bonding with a cation–π interaction. The interaction strength has been estimated mainly in terms of the binding distance and the interaction energy. The results show that halogen–hydride halogen bonding is strengthened greatly by a cation–π interaction. The interaction energy in the triads is two to six times as much as that in the dyads. The largest interaction energy is ?8.31 kcal mol^?1 for the halogen bond in the Li⁺???C₆H₅Br???HNa complex. The nature of the cation, the halogen donor, and the metal hydride influence the nature of the halogen bond. The enhancement effect of Li⁺ on the halogen bond is larger than that of Na⁺. The halogen bond in the Cl donor has a greater enhancement than that in the Br one. The metal hydride imposes its effect in the order HBeH<HMgH<HNa<HLi for the Cl complex and HBeH<HMgH<HLi<HNa for the Br complex. The large cooperative energy indicates that there is a strong interplay between the halogen–hydride halogen bonding and the cation–π interaction. Natural bond orbital and energy decomposition analyses indicate that the electrostatic interaction plays a dominate role in enhancing halogen bonding by a cation–π interaction.     

Resonance Character of Copper/Silver/Gold Bonding in Small Molecule⋅⋅⋅MX (X=F,Cl, Br,CH3, CF3) Complexes

The resonance character of Cu/Ag/Au bonding is investigated in B???M?X (M=Cu, Ag, Au; X=F, Cl, Br, CH₃, CF₃; B=CO, H₂O, H₂S, C₂H₂, C₂H₄) complexes. The natural bond orbital/natural resonance theory results strongly support the general resonance‐type three‐center/four‐electron (3c/4e) picture of Cu/Ag/Au bonding, B:M?X?B⁺?M:X^?, which mainly arises from hyperconjugation interactions. On the basis of such resonance‐type bonding mechanisms, the ligand effects in the more strongly bound OC???M?X series are analyzed, and distinct competition between CO and the axial ligand X is observed. This competitive bonding picture directly explains why CO in OC???Au?CF₃ can be readily replaced by a number of other ligands. Additionally, conservation of the bond order indicates that the idealized relationship b_B???M+b_MX=1 should be suitably generalized for intermolecular bonding, especially if there is additional partial multiple bonding at one end of the 3c/4e hyperbonded triad.     

Probing the reactivity of microhydrated α‐nucleophile in the anionic gas‐phase SN2 reaction

To probe the kinetic performance of microsolvated α‐nucleophile, the G2(+)_M calculations were carried out for the gas‐phase S_N2 reactions of monohydrated and dihydrated α‐oxy‐nucleophiles XO^?(H₂O)_{n = 1,2} (X = HO, CH₃O, F, Cl, Br), and α‐sulfur‐nucleophile, HSS^?(H₂O)_{n = 1,2}, toward CH₃Cl. We compared the reactivities of hydrated α‐nucleophiles to those of hydrated normal nucleophiles. Our calculations show that the α‐effect of monohydrated and dihydrated α‐oxy‐nucleophiles will become weaker than those of unhydrated ones if we apply a plot of activation barrier as a function of anion basicity. Whereas the enhanced reactivity of monohydrated and dihydrated ROO^? (R = H, Me) could be observed if compared them with the specific normal nucleophiles, RO^? (R = H, Me). This phenomena can not be seen in the comparisons of XO^?(H₂O)_{n = 1,2} (X = F, Cl, Br) with ClC₂H₄O^?(H₂O)_{n = 1,2}, a normal nucleophile with similar gas basicity to XO^?(H₂O)_{n = 1,2}. These results have been carefully analyzed by natural bond orbital theory and activation strain model. Meanwhile, the relationships between activation barriers with reaction energies and the ionization energies of α‐nucleophile are also discussed. © 2015 Wiley Periodicals, Inc.     

Mechanisms for the Breakdown of Halomethanes through Reactions with Ground‐State Cyano Radicals

One route to break down halomethanes is through reactions with radical species. The capability of the artificial force‐induced reaction algorithm to efficiently explore a large number of radical reaction pathways has been illustrated for reactions between haloalkanes (CX₃Y; X=H, F; Y=Cl, Br) and ground‐state (²Σ⁺) cyano radicals (CN). For CH₃Cl+CN, 71 stationary points in eight different pathways have been located and, in agreement with experiment, the highest rate constant (10⁸ s^?1 M ^?1 at 298 K) is obtained for hydrogen abstraction. For CH₃Br, the rate constants for hydrogen and halogen abstraction are similar (10⁹ s^?1 M ^?1), whereas replacing hydrogen with fluorine eliminates the hydrogen‐abstraction route and decreases the rate constants for halogen abstraction by 2–3 orders of magnitude. The detailed mapping of stationary points allows accurate calculations of product distributions, and the encouraging rate constants should motivate future studies with other radicals.     

Influence of the Li⋅⋅⋅π Interaction on the H/X⋅⋅⋅π Interactions in HOLi⋅⋅⋅C6H6⋅⋅⋅HOX/XOH (X=F,Cl, Br,I) Complexes

The influences of the Li???π interaction of C₆H₆???LiOH on the H???π interaction of C₆H₆???HOX (X=F, Cl, Br, I) and the X???π interaction of C₆H₆???XOH (X=Cl, Br, I) are investigated by means of full electronic second‐order Møller–Plesset perturbation theory calculations and “quantum theory of atoms in molecules” (QTAIM) studies. The binding energies, binding distances, infrared vibrational frequencies, and electron densities at the bond critical points (BCPs) of the hydrogen bonds and halogen bonds prove that the addition of the Li???π interaction to benzene weakens the H???π and X???π interactions. The influences of the Li???π interaction on H???π interactions are greater than those on X???π interactions; the influences of the H???π interactions on the Li???π interaction are greater than X???π interactions on Li???π interaction. The greater the influence of Li???π interaction on H/X???π interactions, the greater the influences of H/X???π interactions on Li???π interaction. QTAIM studies show that the intermolecular interactions of C₆H₆???HOX and C₆H₆???XOH are mainly of the π type. The electron densities at the BCPs of hydrogen bonds and halogen bonds decrease on going from bimolecular complexes to termolecular complexes, and the π‐electron densities at the BCPs show the same pattern. Natural bond orbital analyses show that the Li???π interaction reduces electron transfer from C₆H₆ to HOX and XOH.     

Strong N−X⋅⋅⋅O−N Halogen Bonds: A Comprehensive Study on N‐Halosaccharin Pyridine N‐Oxide Complexes

A study of the strong N?X???^?O?N⁺ (X=I, Br) halogen bonding interactions reports 2×27 donor×acceptor complexes of N‐halosaccharins and pyridine N‐oxides (PyNO). DFT calculations were used to investigate the X???O halogen bond (XB) interaction energies in 54 complexes. A simplified computationally fast electrostatic model was developed for predicting the X???O XBs. The XB interaction energies vary from ?47.5 to ?120.3 kJ mol^?1; the strongest N?I???^?O?N⁺ XBs approaching those of 3‐center‐4‐electron [N?I?N]⁺ halogen‐bonded systems (ca. 160 kJ mol^?1). ¹H NMR association constants (K_XB) determined in CDCl₃ and [D₆]acetone vary from 2.0×10⁰ to >10⁸ m ^?1 and correlate well with the calculated donor×acceptor complexation enthalpies found between ?38.4 and ?77.5 kJ mol^?1. In X‐ray crystal structures, the N‐iodosaccharin‐PyNO complexes manifest short interaction ratios (R_XB) between 0.65–0.67 for the N?I???^?O?N⁺ halogen bond.     

New equation for calculating total interaction energy in one noncyclic ABC triad and new insights into cooperativity of noncovalent bonds

In this work, a new equation consist of A???B, B???C, A???BC, and AB???C interactions is proposed for calculating the total interaction energy of noncyclic ABC triads. New equations are also proposed for calculating the changes in values of A???B and B???C interactions on the formation of triad from the corresponding dyads. The advantages of equations proposed here in comparison with many‐body interaction energy approach are discussed. All proposed equations were tested in F₃MLi???NCH???HLH and F₃MLi???HLH???HCN (M = C, Si; L = Be, Mg) as well as H₃N???XY???HF (X, Y = F, Cl, Br) noncyclic A???B???C triads. The data show that the total cooperativity of triad correlates well with the sum of the changes in values of A???B and B???C interactions calculated through new equations proposed here. © 2016 Wiley Periodicals, Inc.     

Chloromethane–Water Adduct: Rotational Spectrum,Weak Hydrogen Bonds,and Internal Dynamics

The rotational spectra of four isotopologues of the 1:1 complex between chloromethane and water revealed the presence of only one rotamer in a pulsed jet expansion. The two subunits are linked through two weak hydrogen bonds, O? H???Cl (R_H???Cl=2.638(2) Å) and C? H???O (R_H???O=2.501(2) Å), forming a five‐membered ring. All transitions display the hyperfine structure due to the ³⁵Cl (or ³⁷Cl) nuclear quadrupole effects. Dynamical features in the spectrum are caused by two large‐amplitude motions. Each component line appears as an asymmetric doublet with a relative intensity ratio of 1:3. The splittings led to the determination of barrier to internal rotation of water around its symmetry axis, V₂=320(10) cm^?1. Finally, an unexpected small value of the inertial defect (?0.96 uŲ rather than ?3.22 uŲ) allowed the estimation of the barrier to the internal rotation of the CH₃ group, V₃≈8 cm^?1.     

Nucleophilic Substitution at Phosphorus Centers (SN2@P)

We have studied the characteristics of archetypal model systems for bimolecular nucleophilic substitution at phosphorus (S_N2@P) and, for comparison, at carbon (S_N2@C) and silicon (S_N2@Si) centers. In our studies, we applied the generalized gradient approximation (GGA) of density functional theory (DFT) at the OLYP/TZ2P level. Our model systems cover nucleophilic substitution at carbon in X^?+CH₃Y (S_N2@C), at silicon in X^?+SiH₃Y (S_N2@Si), at tricoordinate phosphorus in X^?+PH₂Y (S_N2@P3), and at tetracoordinate phosphorus in X^?+POH₂Y (S_N2@P4). The main feature of going from S_N2@C to S_N2@P is the loss of the characteristic double‐well potential energy surface (PES) involving a transition state [X? CH₃? Y]^? and the occurrence of a single‐well PES with a stable transition complex, namely, [X? PH₂? Y]^? or [X? POH₂? Y]^?. The differences between S_N2@P3 and S_N2@P4 are relatively small. We explored both the symmetric and asymmetric (i.e. X, Y=Cl, OH) S_N2 reactions in our model systems, the competition between backside and frontside pathways, and the dependence of the reactions on the conformation of the reactants. Furthermore, we studied the effect, on the symmetric and asymmetric S_N2@P3 and S_N2@P4 reactions, of replacing hydrogen substituents at the phosphorus centers by chlorine and fluorine in the model systems X^?+PR₂Y and X^?+POR₂Y, with R=Cl, F. An interesting phenomenon is the occurrence of a triple‐well PES not only in the symmetric, but also in the asymmetric S_N2@P4 reactions of X^?+POCl₂? Y.     

Theoretical study of the gas‐phase SN2 reactions of X− with CH3OY (X,Y = Cl,Br, I)

The gas‐phase nucleophilic substitution reactions at saturated oxygen X^? + CH₃OY (X, Y = Cl, Br, I) have been investigated at the level of CCSD(T)/6‐311+G(2df,p)//B3LYP/6‐311+G(2df,p). The calculated results indicate that X^? preferably attacks oxygen atom of CH₃OY via a S_N2 pathway. The central barriers and overall barriers are respectively in good agreement with both the predictions of Marcus equation and its modification, respectively. Central barrier heights (ΔH and ΔH) correlate well with the charges (Q) of the leaving groups (Y), Wiberg bond orders (BO) and the elongation of the bonds (O? Y and O? X) in the transition structures. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Synthesis,structure and cytotoxic activity of diethyltin N‐[(2‐oxyphenyl)methylene]phenylalaninates

Four new diethyltin N‐[(2‐oxyphenyl)methylene]phenylalaninates, (CH₃CH₂)₂Sn[2‐O‐3‐X‐5‐YC₆H₂CH?NCH(CH₂Ph)COO] (X, Y = H, H, 1 ; H, Br, 2 ; H, OCH₃, 3 ; Br, Br, 4 ), have been synthesized and characterized using elemental analysis and infrared and NMR (¹H, ¹³C and ¹¹⁹Sn) spectra. The crystal structures of 1 , 2 , 3 , 4 have been determined. Compounds 1 and 2 have a 12‐membered macrocyclic structure with a trimeric [Sn₃O₆C₃] core. Each tin atom is six‐coordinated in distorted [SnC₂NO₃] octahedral geometry. Compound 3 is a centrosymmetric weak dimer in which the two tin centers are linked by two asymmetric Sn? O???Sn bridges involving the phenolic oxygen of the ligand and two Sn???O interactions from ether oxygen of the adjacent ligand. The coordination geometry of the tin atom can be described as a distorted pentagonal bipyramid with two ethyl groups in axial positions. Compound 4 is a novel binuclear tin complex, formed by the carboxylate of a ligand asymmetrically bridging two tin atoms, which contains a five‐coordinated tin and a six‐coordinated tin. Bioassay results have shown that the compounds have weak in vitro activity against two human tumor cell lines, A549 and CoLo205. Copyright © 2016 John Wiley & Sons, Ltd.     

A Crystallographic Charge Density Study of the Partial Covalent Nature of Strong N⋅⋅⋅Br Halogen Bonds

The covalent nature of strong N?Br???N halogen bonds in a cocrystal ( 2 ) of N‐bromosuccinimide ( NBS ) with 3,5‐dimethylpyridine ( lut ) was determined from X‐ray charge density studies and compared to a weak N?Br???O halogen bond in pure crystalline NBS ( 1 ) and a covalent bond in bis(3‐methylpyridine)bromonium cation (in its perchlorate salt ( 3 ). In 2 , the donor N?Br bond is elongated by 0.0954 Å, while the Br???acceptor distance of 2.3194(4) is 1.08 Å shorter than the sum of the van der Waals radii. A maximum electron density of 0.38 e Å^?3 along the Br???N halogen bond indicates a considerable covalent contribution to the total interaction. This value is intermediate to 0.067 e Å^?3 for the Br???O contact in 1 , and approximately 0.7 e Å^?3 in both N?Br bonds of the bromonium cation in 3 . A calculation of the natural bond order charges of the contact atoms, and the σ*(N1?Br) population of NBS as a function of distance between NBS and lut , have shown that charge transfer becomes significant at a Br???N distance below about 3 Å.     

Hydrolyse und Halogenidaustausch von Pentahalogenomonocarbonylosmaten(III)

Hydrolysis and Halide Exchange of Pentahalogenomonocarbonyl Osmates(III) The aquo complexes [OsX₄(CO)(H₂O)]^?, [OsX₃(CO)(H₂O)] and [OsX₂(CO)(H₂O)₃]⁺, X ? Cl, Br, I, produced by the stepwise hydrolysis of [OsX₅(CO)]^2?, are isolated as pure solutions by ionophoresis and characterized by their absorption spectra. Due to stability of the monaquo complexes and the different trans-effect of the halides it is possible to prepare the mixed complexes [OsX_4–nY_n(CO)(H₂O)]^?, X ≠ Y = Cl, Br, I, n = 1–3, and for n = 2 the pure stereoisomers are formed. A systematic shift is found in charge-transfer bands to the shorter wavelengths when the halides are replaced by H₂O, I by Br or Cl and Br by Cl.     

Photophysical Processes in ‘Supramolecular Balls’ Formed by Lanthanide Chloride with 2,2′‐Bipyridine

The europium complex [EuCl₂(bpy)₂(H₂O)₂]Cl?1.25 C₂H₆O?0.37 H₂O, where bpy is 2,2′‐bipyridine, was synthesized and investigated with the aim to relate its molecular geometry and crystal packing to the efficiency of energy‐transfer processes. The presence of H‐bonds between noncoordinated Cl^? ions and coordinated H₂O molecules leads to the formation of discrete trimers assembled by a number of C? H???Cl and stacking interactions into ‘supramolecular balls’ which contain Cl^? ions and solvate molecules (H₂O and EtOH). The additional stabilization of the complex is due to intramolecular N???C interactions between two bpy ligands that causes some shortening of the Eu? N bonds. Deciphering the luminescence properties of the Eu complex was performed under consideration of both the composition of the inner coordination sphere and the peculiarities of the crystal packing. The influence of the latter and the bpy orientation on the energy of the ligand→Eu charge‐transfer state (LMCT) was established, and an additional excited state induced by the π‐stacking interaction (SICT) was identified.     

Energy disposal in gas-phase nucleophilic displacement reactions

The partitioning of reaction exothermicity into relative translational energy of the products of gas-phase S_N2 (F^? + CH₃Cl) and nucleophilic aromatic substitution (F^? + C₆H₅Cl) reactions has been investigated using kinetic energy release Fourier transform ion cyclotron resonance spectroscopy. The chloride product ion is observed to be highly translationally excited for the S_N2 reaction, indicating a cold internal energy distribution for the products. For the chlorobenzene reaction the products are not generated with large translational energies. The results are compared with a statistical model. Ion-intensity profiles for the CH₃Cl reaction deviate significantly from the statistical model whereas the chlorobenzene results are consistent with this model. The kinetic energy release for the CH₃C1 reaction is compared with energy-disposal results for the photodissociation and dissociative electron-attachment processes of halomethanes. In all three cases a node in the molecular orbital between the carbon atom and the departing halogen results in a repulsive energy release. Ion-retention curves for the nucleophilic aromatic substitution reaction are consistent with the existence of a long-lived ion-dipole complex on the exit channel for this reaction.