Conformational mobility of the six-membered ring in 5-oxo-1,3-cyclohexadiene and its derivatives

Molecular mechanics and MNDO calculations showed that the six-membered ring in the molecule of 5-oxo-1,3-cyclohexadiene possesses high conformational mobility. The transition from a planar equilibrium conformation to a distorted sofa conformation in which the C(sp²)-C(=O)-C(sp³)-C(sp²) torsion angle is equal to ±30° increases the energy of the molecule by less than 1 kcal mol^–1. The influence of steric (R = Me, Et, Prⁱ, Bu^t) and electronic (R = NH₂, NO₂) effects of substituents R on the equilibrium conformation and mobility of the carbocycle has been analyzed. Both types of substituents at unsaturated C atoms do not change the equlibrium conformation or flexibility of the six-membered ring. Substituents at saturated C atoms cause the transition of the carbocycle to the distorted sofa conformation and significantly restrict its mobility. The electronic structures of 5-oxo-1,3-cyclohexadiene and its amino and nitro derivatives have been analyzed.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 849–854, May, 1995.     

The reaction of anthracenyl-α-hydroxyphosphonate with anthracene: Access to diverse (bis)-anthracenylmethylphosphonates as a suitable source for extensive π-conjugates

Abstract

Molecular anthracene has been used as an arene in the Friedel-Crafts (FC) type arylation reaction of anthracenyl-α-hydroxyphosphonate in the presence of acid. A diverse product formation is observed, in which anthracene unit is found to be linked through its C1 position with α-C of phosphonate. Interestingly, the molecular conformation (X-ray structure) of this phosphonate reveals one of the bond angles of a tetrahedral carbon as 118° which is close to the C of sp² character. Further, molecular anthracene is also recognized to attack at the C10 position of 9-anthracenylphosphonate through C1 or C2 or C9 atoms and the structures of three isomeric phosphonates are established with the help of ¹H and ³¹P NMR studies. The bis-anthracenyl compounds with a P-CH₂ unit have been successfully utilized in Horner-Wadsworth-Emmons (HWE) reactions to afford extensive bis-anthracenyl-linked π-conjugates.     

2,4-Bis{[6-(2,2-dimethylpropyl)-3-ethyl-1,3-benzothiazol-2(3H)-yl­idene]methyl}cyclobutenediylium-1,3-­diolate

The title compound, C₃₄H₄₀N₂O₂S₂, adopts a trans conformation. The four conjugated Csp²—Csp² single and double bonds of the polymethinic moiety, which bridges both heterocyclic end groups and the central four-membered ring, display nearly equal bond lengths. The mol­ecule is nearly planar, with interplanar angles between the benzo­thia­zole end groups and the central four-membered ring of 6.9 (1) and 7.7 (1)°; the angle between the heterocyclic systems is 1.8 (1)°. The crystal packing involves π-stacking effects, with intermolecular C⃛C distances varying from 3.755 (3) to 3.991 (3) Å.     

AM1 studies on methyl radical additions to C=N and N=N double bonds in aza and azo compounds

The addition reactions of CH₃ to C_sp ² and N_sp ² inE-but-2-ene,E-2-azabut-2-ene andE-azomethane were studied theoretically at the level of a semiempirical quantum-chemical method. Similar reactions withE-azoethane andE-azoisopropane were also studied. The activation enthalpies were calculated by means of the Austin Model 1 (AM1) unrestricted Hartree-Fock (UHF) approximation. The calculated data qualitatively support those available in the literature: the activation enthalpies of the additions to N_sp ² are larger than those to C_sp ². The results further support the validity of the Hammond postulate.     

3,17‐Dioxoandrost‐4‐en‐4‐yl acetate

The title compound, C₂₁H₂₈O₄, has a 4‐acetoxy substituent positioned on the steroid α face. The six‐membered ring A assumes a conformation intermediate between 1α,2β‐half chair and 1α‐sofa. A long Csp³—Csp³ bond is observed in ring B and reproduced in quantum‐mechanical ab initio calculations of the isolated molecule using a molecular‐orbital Hartree–Fock method. Cohesion of the crystal can be attributed to van der Waals interactions and weak C—H...O hydrogen bonds.     

C(spn)−X (n=1–3) Bond Activation by Palladium

We have studied the palladium-mediated activation of C(spⁿ)−X bonds (n = 1–3 and X = H, CH₃, Cl) in archetypal model substrates H₃C−CH₂−X, H₂C=CH−X and HC≡C−X by catalysts PdL_n with L_n = no ligand, Cl⁻, and (PH₃)₂, using relativistic density functional theory at ZORA-BLYP/TZ2P. The oxidative addition barrier decreases along this series, even though the strength of the bonds increases going from C(sp³)−X, to C(sp²)−X, to C(sp)−X. Activation strain and matching energy decomposition analyses reveal that the decreased oxidative addition barrier going from sp³, to sp², to sp, originates from a reduction in the destabilizing steric (Pauli) repulsion between catalyst and substrate. This is the direct consequence of the decreasing coordination number of the carbon atom in C(spⁿ)−X, which goes from four, to three, to two along this series. The associated net stabilization of the catalyst–substrate interaction dominates the trend in strain energy which indeed becomes more destabilizing along this same series as the bond becomes stronger from C(sp³)−X to C(sp)−X.     

Gas‐phase functionalized carbon‐carbon coupling reactions catalyzed by Ni (II) complexes

Gas‐phase C―C coupling reactions mediated by Ni (II) complexes were studied using a linear quadrupole ion trap mass spectrometer. Ternary nickel cationic carboxylate complexes, [(phen)Ni (OOCR¹)]⁺ (where phen = 1,10‐phenanthroline), were formed by electrospray ionization. Upon collision‐induced dissociation (CID), they extrude CO₂ forming the organometallic cation [(phen)Ni(R¹)]⁺, which undergoes gas‐phase ion‐molecule reactions (IMR) with acetate esters CH₃COOR² to yield the acetate complex [(phen)Ni (OOCCH₃)]⁺ and a C―C coupling product R¹‐R². These Ni(II)/phenanthroline‐mediated coupling reactions can be performed with a variety of carbon substituents R¹ and R² (sp³, sp², or aromatic), some of them functionalized. Reaction rates do not seem to be strongly dependent on the nature of the substituents, as sp³‐sp³ or sp²‐sp² coupling reactions proceed rapidly. Experimental results are supported by density functional theory calculations, which provide insights into the energetics associated with the C―C bond coupling step.     

Supramolecular Ribbons. Crystal Structure and Spectroscopic Properties of 2,2′-Bipyrroyl

Summary.  A crystal structure determination of 2,2′-bipyrroyl (1; 2,2′-dipyrryl-diketone, bis (2-pyrrolyl)ethanedione) and its spectroscopic properties in solution are reported. In the crystal, 1 self-assembles via hydrogen bonding into supramolecular ribbons that extend indefinitely through the crystal lattice. The observed molecular conformation is one where each pyrrole ring and adjacent carbonyl group are co-planar (torsion angle ∼ 0.9°), with the N-H pointing in the same direction as the C=O. The two carbonyls have a transoid but not co-planar geometry with a torsion angle of ∼128°. Adjacent molecules in the crystal are linked by pairs of intermolecular hydrogen bonds, pyrrole NH to carbonyl oxygen, to form a matrix of polymeric chains that lie like neatly stacked, parallel streams of ribbons. Molecular mechanics calculations on the monomer indicate an intra-molecularly hydrogen bonded planar conformation (sp, ap, sp) at the global energy minimum. In CHCl₃, 1 is monomeric according to vapor pressure osmometry (MW _obs=179±10 vsċMW _calc=188). In THF, the measured molecular weight is 340±15, which corresponds best to one molecule of 1 solvated by two THF molecules (MW=322 for C₁₀H₈N₂O₄ċ2 C₄H₈O) rather than to a dimer. Received October 21, 1999. Accepted November 2, 1999     

Fluorocyclisation of Oximes to Isoxazolines Through I(I)/I(III) Catalysis

A regioselective fluorocyclisation of β,γ-unsaturated oximes through I(I)/I(III) catalysis is disclosed to generate 5-fluoromethylated isoxazolines. The transformation leverages p-iodotoluene as an inexpensive catalyst, Selectfluor® as the terminal oxidant and an amine⋅HF complex (1 : 7.5) as both the fluoride and Brønsted acid source. The λ³-iodane p-TolIF₂, which is generated in situ, engages the pendant alkene of the substrate to facilitate a cyclisation/fluorination sequence. A range of 5-fluoromethyl isoxazolines can be generated using this method, including aliphatic and aromatic systems (up to 56 % yield). Single crystal X-ray analysis of a representative example reveals a conformation that is consistent with the stereoelectronic gauche effect between the exocyclic C(sp³)−F bond and the C(sp³)−O of the isoxazoline (ϕ_OCCF=−62.0°).     

Supramolecular Ribbons. Crystal Structure and Spectroscopic Properties of 2,2′-Bipyrroyl

 A crystal structure determination of 2,2′-bipyrroyl (1; 2,2′-dipyrryl-diketone, bis (2-pyrrolyl)ethanedione) and its spectroscopic properties in solution are reported. In the crystal, 1 self-assembles via hydrogen bonding into supramolecular ribbons that extend indefinitely through the crystal lattice. The observed molecular conformation is one where each pyrrole ring and adjacent carbonyl group are co-planar (torsion angle ∼ 0.9°), with the N-H pointing in the same direction as the C=O. The two carbonyls have a transoid but not co-planar geometry with a torsion angle of ∼128°. Adjacent molecules in the crystal are linked by pairs of intermolecular hydrogen bonds, pyrrole NH to carbonyl oxygen, to form a matrix of polymeric chains that lie like neatly stacked, parallel streams of ribbons. Molecular mechanics calculations on the monomer indicate an intra-molecularly hydrogen bonded planar conformation (sp, ap, sp) at the global energy minimum. In CHCl₃, 1 is monomeric according to vapor pressure osmometry (MW _obs=179±10 vsċMW _calc=188). In THF, the measured molecular weight is 340±15, which corresponds best to one molecule of 1 solvated by two THF molecules (MW=322 for C₁₀H₈N₂O₄ċ2 C₄H₈O) rather than to a dimer.     

Dynamic Covalent Properties of a Novel Indolo[3,2-b]carbazole Diradical

This work describes the synthesis and properties of a dicyanomethylene-substituted indolo[3,2-b]carbazole diradical ICz-CN. This quinoidal system dimerises almost completely to (ICz-CN)₂, which contains two long C(sp³)−C(sp³) σ-bonds between the dicyanomethylene units. The minor open-shell ICz-CN component in the solid-state mixture was identified by EPR spectroscopy. Cyclic voltammetry and UV–visible spectroelectrochemical data, as well as comparison with reference monomer ICz-Br reveal that the nature of the one-electron oxidation of (ICz-CN)₂ at ambient temperature and ICz-CN at elevated temperature is very similar in all these compounds due to the prevailing localization of their HOMO on the ICz backbone. The peculiar cathodic behaviour reflects the co-existence of (ICz-CN)₂ and ICz-CN. The involvement of the dicyanomethylene groups stabilizes the close-lying LUMO and LUMO+1 of (ICz-CN)₂ and especially ICz-CN compared to ICz-Br, resulting in a distinctive cathodic response at low overpotentials. Differently from neutral ICz-CN, its radical anion and dianion are remarkably stable under ambient conditions. The UV/Vis(–NIR) electronic transitions in parent (ICz-CN)₂ and ICz-CN and their different redox forms have been assigned convincingly with the aid of TD-DFT calculations. The σ-bond in neutral (ICz-CN)₂ is cleaved in solution and in the solid-state upon soft external stimuli (temperature, pressure), showing a strong chromism from light yellow to blue–green. Notably, in the solid state, the monomeric diradical species is predominantly formed under high hydrostatic pressure (>1 GPa).     

Boat form contributions in crowded piperidines: Theoretical and experimental study

The preferred conformations of N-nitroso-t(3)-alkyl-r(2),c(6)-bis(2′-furyl)-piperidin-4-ones 1–3 [alkyl = CH₃, C₂H₅ and CH(CH₃)₂] and N-nitroso-t(3),t(5)-dimethyl-r(2),c(6)-bis(2′-furyl)piperidin-4-one 4 in solutions were assigned by means of ¹H and ¹³C NMR studies. The results derived from NMR spectra indicate the presence of an equilibrium mixture of boat conformation B ₁ and alternate chair conformation CA for the E isomers of 1–3 and Z isomers of 2–3. For the Z isomer of 1 boat form B ₂ is predicted to be the major conformer. The N-nitroso-3,5-dimethyl derivative 4 exists in the boat form B ₁ only. Conformational analysis performed through semiempirical molecular orbital calculations also supports the conformations for 3–4. The presence of one conformer in the equilibrium can be predicted to a reasonable accuracy by theoretical studies in 1–2. The effects due to N-nitrosation on ¹H and ¹³C chemical shifts are also interpreted in terms of these conformations. The conformation of isopropyl group at C(3) was also predicted by spectral and theoretical studies.     

(1R,2S)‐2‐[N‐Methyl‐N‐(4‐toluene­sulfonyl)amino]‐1‐phenylpropan‐1‐ol

In the title compound, C₁₇H₂₁NO₃S, the S atom is in a distorted tetrahedral geometry and the N atom exhibits sp² character. The antiperiplanar conformation is observed for the N and hydroxyl‐O atoms and the torsion angle around the N—C linkage is ?136.3 (2)°. The mol­ecules are linked by O—H?O intermolecular hydrogen bonds to form an infinite one‐dimensional chains along the c axis.     

Zur Chemie der Pyrrolpigmente, 63. Mitt.

Using hexamethylphosphoric acid triamide (HMPT) as solvent for bilatrienesabc and mainly for 2,3-dihydrobilatrienes-abc (which serve as the most suitable models for the biliproteid chromophores) a small hypsochromic shift and a dramatic change of the relative intensities of short and long wavelength absorption bands, as compared to solutions in CCl₄, is observed. Applying NMR-spectroscopic techniques (¹⁵N-,¹³C-,¹H-) a predominance of the (4Z,9E,15Z) diastereomer forming a 5syn-, 10anti-, 14syn-periplanar orclinal conformation is deduced. The stabilisation of this configuration and conformation arises from strong hydrogen bonds between the acidic protons of the bilins andHMPT. Interactions of this kind seem to be the main source of energy to stretch the otherwise coiled bilin chromophore of (4Z,9Z,15Z)-5sp,10sp,14sp geometry. Stretched systems of the type bilin-HMPT may serve as a valuable model for the natural biliproteides.

Herrn Prof. Dr.A. Eschenmoser zum 60. Geburtstag gewidmet.116, 1065 (1985).     

Conformation and Aromaticity Switching in a Curved Non-Alternant sp2 Carbon Scaffold

A curved sp² carbon scaffold containing fused pentagon and heptagon units ( 1 ) was synthesized by Pd-catalyzed [5+2] annulation from a 3,9-diboraperylene precursor and shows two reversible oxidation processes at low redox potential, accompanied by a butterfly-like motion. Stepwise oxidation produced radical cation 1 ^.+ and dication 1 ²⁺. In the crystal structure, 1 exhibits a chiral cisoid conformation and partial π-overlap between the enantiomers. For the radical cation 1 ^.+, a less curved cisoid conformation is observed with a π-dimer-type arrangement. 1 ²⁺ adopts a more planar structure with transoid conformation and slip-stacked π-overlap with closest neighbors. We also observed an intermolecular mixed-valence complex of 1 ⋅( 1 ^.+)₃ that has a huge trigonal unit cell [( 1 )₇₂(SbF₆)₅₄⋅(hexane)₁₀₁] and hexagonal columnar stacks. In addition to the conformational change, the aromaticity of 1 changes from localized to delocalized, as demonstrated by AICD and NICS(1)_zz calculations.     

The structure of angustifoline,an alkaloid ofLupinus angustifolius,in solution

Summary The¹H and¹³C NMR spectra of the lupin alkaloidangustifoline 1 in four solvents (cyclohexane-d₁₂, CDCl₃, CD₃CN, and C₆D₆) were assigned using 2D H,H and H,C COSY and 2D J-resolved spectra. The torsional HCCH angles calculated from the vicinalJ _HH coupling constants are essentially in agreement with those expected for the deformed all-chair conformation withendo oriented N(12)-H bond, reported earlier for1 in the solid state. Some arguments seem to point, however, to a small contribution of other conformations: with ring A deformed in another direction, deformed all-chair withexo oriented N(12)-H bond and/or a conformation with ring C in the boat form.Lupin Alkaloids, part 7     

Study of the structure of <Emphasis Type="Italic">p-tert</Emphasis>-butyl-substituted thiacalix[4]arenes containing amide fragment by one- and two-dimensional NMR spectroscopy

Structures of 5,11,17,23-tetra-tert-butyl-25,26,27-trihydroxy-28- and 5,11,17,23-tetra-tert-butyl-25,26-dihydroxy-27,28-[N-(4′-nitrophenyl)aminocarbonylmethoxy]thiacalix[4]arenes (I, II) (solutions in CDCl₃) were studied by ¹H and ¹³C 1D and 2D (NOESY) NMR spectroscopy combined with the use of computational simulation (semiempirical quantum-chemical calculations, method PM3). Compound I was found to exists in the cone conformation, and the bulky substituent OCH₂C(O)NHPhNO₂, in contrast to the crystalline state, was located in the exo position to the macrocycle cavity; for compound II the cone conformation was observed, where the substituents are turned to the inside of the cavity of the macrocycle (endo position).     

Conformational analysis of 4-(2′-furyl)-2-(methylamino)pyrimidine

Conformational transformations of the title compound 1 were studied using high-resolution ¹H-nmr techniques, semi-empirical PM3 calculations and molecular dynamics. The unfused furan-pyrimidine ring system of 1 predominantly exists in an s-trans conformation in solution and the considerable sp² character of the C2?amino bond results in the hindered rotation which is observed on the nmr time scale.     

Mercury(II) cyanide complexes with alkyldiamines: solid-state/solution NMR,computational, and antimicrobial studies

Mercury cyanide complexes of alkyldiamines (1–6), [Hg(L)(CN)₂] (where L?=?en (1,2-diaminoethane), pn (1,3-diaminopropane), N-Me-en, N, N′-Me₂-en, N, N′-Et₂-en, and N, N′-ipr₂-en), have been synthesized and characterized by elemental analysis, IR, ¹³C, and ¹⁵N solution NMR in DMSO-d₆, as well as ¹³C, ¹⁵N, and ¹⁹⁹Hg solid-state NMR spectroscopy. Complexes 1 and 2 have been studied computationally, built and optimized by GAUSSIAN03 using DFT at B3LYP level with LanL2DZ basis set. Binding modes of en and bn (where bn?=?1,4-diaminobutane) toward Hg(CN)₂ are completely different. Complexes with en and pn show chelating binding to Hg(II), while bn behaves as a bridging ligand to form a polymeric structure, [Hg(CN)₂-bn]_∞ [B.A. Al-Maythalony, M. Fettouhi, M.I.M. Wazeer, A.A. Isab. Inorg. Chem. Commun., 12, 540 (2009).]. The solution ¹³C NMR of the complexes demonstrates a slight shift of the ?C≡N (0.9 to 2?ppm) and ?C–NH₂ (0.25 to 6?ppm) carbon resonances, while the other resonances are relatively unaffected. ¹⁵N labeling studies have shown involvement of alkyldiamine ligands in coordination to the metal. The principal components of the ¹³C, ¹⁵N, and ¹⁹⁹Hg shielding tensors have been determined from solid-state NMR data. Antimicrobial activity studies show that the complexes exhibit higher antibacterial activities toward various microorganisms than Hg(CN)₂.     

1‐Acetyl‐3′‐(4‐bromophenyl)‐3′‐chlorospiro[3H‐indole‐3,2′‐oxetan]‐2(1H)‐one

In the title compound, C₁₈H₁₃BrClNO₃, the heterocyclic ring of the indole is distorted from planarity towards an envelope conformation. The orientations of the indole, oxetane, chloro and bromo­phenyl substituents are conditioned by the sp³ states of the spiro‐junction and the Cl‐attached C atoms.