Interplay of Twisting and Folding in Overcrowded Heteromerous Bistricyclic Aromatic Enes

Fluorenylidenexanthenes 5-7 were synthesized by 2-fold extrusion diazo-thione couplings. 7 exhibited yellow crystals and purple (560 nm) solutions. (1)H NMR of 5 and 7 indicated subtle equilibria twisted (t) right harpoon over left harpoon anti-folded (a) major/minor conformations. (13)C DNMR of 6 gave DeltaG(c)(double dagger)(enantiomerization/inversion) = 26.5 kJ/mol and DeltaG(c)(double dagger)(E,Z-topomerization) = 82.0 kJ/mol. PM3 calculations of 5 revealed minima a, t, ts (twisted/syn-folded), DeltaDeltaH(f) degrees = 0.0, 14.1, 15.6 kJ/mol, and transition states [t-ts], [a-ts], [t( perpendicular)], [a-a], DeltaDeltaH(f) degrees = 16.3, 17.4, 82.2, 99.3 kJ/mol.     

Symmetry and geometry considerations of atom transfer: deoxygenation of (silox)3WNO and R3PO (R = Me, Ph, (t)Bu) by (silox)3M (M = V, NbL (L = PMe3, 4-picoline), Ta; silox = (t)Bu3SiO)

Deoxygenations of (silox)(3)WNO (12) and R(3)PO (R = Me, Ph, (t)Bu) by M(silox)(3) (1-M; M = V, NbL (L = PMe(3), 4-picoline), Ta; silox = (t)Bu(3)SiO) reflect the consequences of electronic effects enforced by a limiting steric environment. 1-Ta rapidly deoxygenated R(3)PO (23 degrees C; R = Me (DeltaG degrees (rxn)(calcd) = -47 kcal/mol), Ph) but not (t)Bu(3)PO (85 degrees, >2 days), and cyclometalation competed with deoxygenation of 12 to (silox)(3)WN (11) and (silox)(3)TaO (3-Ta; DeltaG degrees (rxn)(calcd) = -100 kcal/mol). 1-V deoxygenated 12 slowly and formed stable adducts (silox)(3)V-OPR(3) (3-OPR(3)) with OPR(3). 1-Nb(4-picoline) (S = 0) and 1-NbPMe(3) (S = 1) deoxygenated R(3)PO (23 degrees C; R = Me (DeltaG degrees (rxn)(calcd from 1-Nb) = -47 kcal/mol), Ph) rapidly and 12 slowly (DeltaG degrees (rxn)(calcd) = -100 kcal/mol), and failed to deoxygenate (t)Bu(3)PO. Access to a triplet state is critical for substrate (EO) binding, and the S --> T barrier of approximately 17 kcal/mol (calcd) hinders deoxygenations by 1-Ta, while 1-V (S = 1) and 1-Nb (S --> T barrier approximately 2 kcal/mol) are competent. Once binding occurs, significant mixing with an (1)A(1) excited state derived from population of a sigma-orbital is needed to ensure a low-energy intersystem crossing of the (3)A(2) (reactant) and (1)A(1) (product) states. Correlation of a reactant sigma-orbital with a product sigma-orbital is required, and the greater the degree of bending in the (silox)(3)M-O-E angle, the more mixing energetically lowers the intersystem crossing point. The inability of substrates EO = 12 and (t)Bu(3)PO to attain a bent 90 degree angle M-O-E due to sterics explains their slow or negligible deoxygenations. Syntheses of relevant compounds and ramifications of the results are discussed. X-ray structural details are provided for 3-OPMe(3) (90 degree angle V-O-P = 157.61(9) degrees), 3-OP(t)Bu(3) ( 90 degree angle V-O-P = 180 degrees ), 1-NbPMe(3), and (silox)(3)ClWO (9).     

Minimization and optimization of designed beta-hairpin folds

Minimized beta hairpins have provided additional data on the geometric preferences of Trp interactions in TW-loop-WT motifs. This motif imparts significant fold stability to peptides as short as 8 residues. High-resolution NMR structures of a 16- (KKWTWNPATGKWTWQE, DeltaG(U)(298) >or= +7 kJ/mol) and 12-residue (KTWNPATGKWTE, DeltaG(U)(298) = +5.05 kJ/mol) hairpin reveal a common turn geometry and edge-to-face (EtF) packing motif and a cation-pi interaction between Lys(1) and the Trp residue nearest the C-terminus. The magnitude of a CD exciton couplet (due to the two Trp residues) and the chemical shifts of a Trp Hepsilon3 site (shifted upfield by 2.4 ppm due to the EtF stacking geometry) provided near-identical measures of folding. CD melts of representative peptides with the -TW-loop-WT- motif provided the thermodynamic parameters for folding, which reflect enthalpically driven folding at laboratory temperatures with a small DeltaC(p) for unfolding (+420 J K(-)(1)/mol). In the case of Asx-Pro-Xaa-Thr-Gly-Xaa loops, mutations established that the two most important residues in this class of direction-reversing loops are Asx and Gly: mutation to alanine is destabilizing by about 6 and 2 kJ/mol, respectively. All indicators of structuring are retained in a minimized 8-residue construct (Ac-WNPATGKW-NH(2)) with the fold stability reduced to DeltaG(U)(278) = -0.7 kJ/mol. NMR and CD comparisons indicate that -TWXNGKWT- (X = S, I) sequences also form the same hairpin-stabilizing W/W interaction.     

Oxygen Atom Transfer, Coupled Electron-Proton Transfer, and Correlated Electron-Nucleophile Transfer Reactions of Oxomolybdenum(IV) and Dioxomolybdenum(VI) Complexes

The oxo-Mo(IV) complexes LMoO(S(2)PR(2)-S,S') [L = hydrotris(3,5-dimethylpyrazol-1-yl)borate; R = Me, Et, Pr(i)(), Ph] were prepared by reacting MoO(S(2)PR(2))(2) and KL in refluxing toluene. The dioxo-Mo(VI) complexes cis-LMoO(2)(S(2)PR(2)-S) (R = Pr(i)(), Ph) were prepared by oxidation of the oxo-Mo(IV) complexes or by reaction of LMoO(2)Cl with NaS(2)PR(2). Oxygen atom transfers from Me(2)SO to LMoO(S(2)PR(2)) were first-order with respect to Me(2)SO and complex; the overall second-order rate constants at 40 degrees C range from 9.0(1) x 10(-)(5) M(-)(1).s(-)(1) for LMoO(S(2)PMe(2)) to 2.08(5) x 10(-)(4) M(-)(1).s(-)(1) for LMoO(S(2)PPr(2)); activation parameters were in the ranges DeltaH() = 63(1) to 73(1) kJ.mol(-)(1), DeltaS() = -88(1) to -111(1) J.K(-)(1).mol(-)(1), and DeltaG() = 100(2) kJ.mol(-)(1) for LMoO(S(2)PMe(2)) to 98(2) kJ.mol(-)(1) for LMoO(S(2)PPr(2)). Oxygen atom transfer from pyridine N-oxide to LMoO(S(2)PPr(2)) was also second-order with a rate constant of 1.54(5) x 10(-)(3) M(-)(1).s(-)(1) at 40 degrees C, DeltaH() = 62(1) kJ.mol(-)(1), DeltaS() = -90(1) J.K(-)(1).mol(-)(1), and DeltaG() = 90(1) kJ.mol(-)(1). The second-order rate laws and large negative entropies of activation are consistent with associative mechanisms for the above reactions. Oxygen atom transfer from LMoO(2)(S(2)PPr(2)) to PPh(3) was first-order with respect to reactants, with an overall second-order rate constant of 2.5(3) x 10(-)(4) M(-)(1).s(-)(1) at 30 degrees C. In toluene at 40 degrees C, all the above complexes catalyzed the oxidation of PPh(3) by Me(2)SO, with turnover rates of ca. 0.9 mol of PPh(3)/(mol of catalyst/h). Reduction of LMoO(2)(S(2)PR(2)) by SH(-) led to the generation of the dioxo-Mo(V) anions [LMoO(2)(S(2)PR(2)-S)](-), which were slowly converted to the analogous oxothio-Mo(V) complexes [LMoOS(S(2)PR(2)-S)](-). Dioxygen reacted with [LMoOS(S(2)PPr(2))](-) to produce the oxothio-Mo(VI) complex LMoOS(S(2)PPr(2)-S). The (hydroxo)oxo-Mo(V) complexes LMoO(OH)(S(2)PR(2)-S) were formed upon reduction of LMoO(2)(S(2)PR(2)) with PPh(3) in wet (3-5 M H(2)O) tetrahydrofuran or upon ferrocenium oxidation of LMoO(S(2)PR(2)) in wet tetrahydrofuran. In dry solvents, LMoO(S(2)PR(2)) were oxidized to the corresponding cations, [LMoO(S(2)PR(2)-S,S')](+), which reacted with water to form LMoO(OH)(S(2)PR(2)). The Mo(V) complexes have been characterized by EPR spectroscopy.     

A kinetic study of the ring-opening process in tungsten carbonyl complexes containing hemilabile metallodithiolate ligands

The synthesis of the metallodithiolate derivative of tungsten pentacarbonyl from the reaction of photogenerated W(CO)(5)THF and Ni-1 ((1,5-bis(2-mercapto-2-methylpropane)-1,5-diazacyclooctanato)nickel(II)) is described, along with its crystal structure. In N,N-dimethylformamide solution, the pentacarbonyl exists in equilibrium with its tetracarbonyl analogue and carbon monoxide. The pentacarbonyl complex stereoselectively loses cis carbonyl ligands, as is apparent from (13)CO-labeling studies, where the thus-formed tetracarbonyl tungsten complex resulting from chelate ring-closure is preferentially (13)CO-labeled among the two mutually trans CO groups. The kinetics of the addition of CO to the tetracarbonyl to afford the metal pentacarbonyl were monitored by means of in situ infrared spectroscopy in the nu(CO) region at CO pressures between 28 and 97 bar and temperatures over the range 45-60 degrees C. Under these conditions, there was no evidence for W-S bond cleavage in the pentacarbonyl complex with concomitant formation of W(CO)(6). These studies reveal that the tetracarbonyl complex and CO are only slightly unstable with respect to the formation of the pentacarbonyl complex, with an equilibrium constant at 50 degrees C of about 2.8 M(-1) or DeltaG degrees = -1.4 kJ/mol. The activation parameters determined for the ring-opening process (DeltaH = 89.1 kJ/mol and DeltaS = -37.2 J/mol.K) suggest a solvent-assisted concerted ring-opening mechanism.     

Addition of Pt(PBu(t)(3)) groups to Ru(5)(CO)(12)(eta(6)-C(6)H(6))(mu(5)-C). Synthesis, structures, and dynamical activity

The reaction of Ru(5)(CO)(12)(eta(6)-C(6)H(6))(mu(5)-C), 7, with Pt(PBu(t)(3))(2) yielded two products Ru(5)(CO)(12)(eta(6)-C(6)H(6))(mu(6)-C)[Pt(PBu(t)(3))], 8, and Ru(5)(CO)(12)(eta(6)-C(6)H(6))(mu(6)-C)[Pt(PBu(t)(3))](2), 9. Compound 8 contains a Ru(5)Pt metal core in an open octahedral structure. In solution, 8 exists as a mixture of two isomers that interconvert rapidly on the NMR time scale at 20 degrees C, DeltaH() = 7.1(1) kcal mol(-1), DeltaS() = -5.1(6) cal mol(-)(1) K(-)(1), and DeltaG(298)(#) = 8.6(3) kcal mol(-1). Compound 9 is structurally similar to 8, but has an additional Pt(PBu(t)(3)) group bridging an Ru-Ru edge of the cluster. The two Pt(PBu(t)(3)) groups in 9 rapidly exchange on the NMR time scale at 70 degrees C, DeltaH(#) = 9.2(3) kcal mol(-)(1), DeltaS(#) = -5(1) cal mol(-)(1) K(-)(1), and DeltaG(298)(#) = 10.7(7) kcal mol(-1). Compound 8 reacts with hydrogen to give the dihydrido complex Ru(5)(CO)(11)(eta(6)-C(6)H(6))(mu(6)-C)[Pt(PBu(t)(3))](mu-H)(2), 10, in 59% yield. This compound consists of a closed Ru(5)Pt octahedron with two hydride ligands bridging two of the four Pt-Ru bonds.     

Thermodynamic parameters for the binding of inorganic and organic anions by biogenic polyammonium cations

Thermodynamic parameters for the interaction of protonated biogenic polyamines with inorganic or organic polyanions were studied potentiometrically (H(+)-glass electrode) and calorimetrically, at 25 degrees C. No background salt was used in the measurements to avoid interferences, and the formation constants and formation enthalpies were extrapolated to zero ionic strength. Species formed are ALH(r) [L=Cl(-), SO(4)(2-), HPO(4)(2-), P(2)O(7)(4-) and P(3)O(10)(5-); tartrate, malate, citrate, glutamate, 1,2,3-propanetricarboxylate, 1,2,3,4-butanetetracarboxylate], with r=1,2...(n+m-2) and r=1,2...(n+m-1) for inorganic and organic ligands, respectively (n, m=maximum degree of protonation of amine and ligand, respectively). The stability of the various species formed is a function of charges involved in the formation reaction. DeltaH(0) values are generally positive, and therefore these complexes are entropically stabilized. Results are discussed in connection with several previously reported data on similar systems. DeltaG(0) and TDeltaS(0) follow a linear trend as a function of polyammonium cation and inorganic or carboxylic anion charges. DeltaG(0) and TDeltaS(0) charge relationships are reported. In particular, mean values of DeltaG(0) and TDeltaS(0) for single interaction were calculated: DeltaG(0)=7.0 kJ mol(-1) n(-1), TDeltaS(0)=9.1 kJ mol(-1) n(-1) and DeltaG(0)=5.7 kJ mol(-1) n(-1) and TDeltaS(0)=8.7 kJ mol(-1) n(-1), for the species of inorganic and organic polyanions, respectively (n=number of possible salt bridges). A linear relationship was also found for TDeltaS(0) versus DeltaG(0), whose equation is TDeltaS(0)=-7-1.39 DeltaG(0) (with r=0.9409; r, correlation coefficient). The body of correlations found for these thermodynamic parameters shows quite good predictive value.     

Underpotential deposition of hydrogen on benzene-modified Pt(111) in aqueous H2SO4

The Pt(111) electrode is modified by an overlayer of C6H6 (ads) upon its cycling in the 0.05-0.80 V range in aq H2SO4 + 1 mM C6H6. The C6H6 (ads) overlayer significantly changes the underpotential-deposited H (H(UPD)) and anion adsorption, and cyclic-voltammetry (CV) profiles show a sharp cathodic peak and an asymmetric anodic one in the 0.05-0.80 V potential range. The C6H6 (ads) layer blocks the (bi)sulfate adsorption but facilitates the adsorption of one monolayer of H(UPD). Cycling of the benzene-modified Pt(111) in benzene-free aq 0.05 H2SO4 from 0.05 to 0.80 V results in a partial desorption of C6H6 (ads) and in a partial recovery of the CV profile characteristic of an unmodified Pt(111). The peak potential of the cathodic and anodic feature is independent of the scan rate, s (10 < or = s < or = 100 mV s(-1)), and the peak current density increases linearly with an increase of the scan rate. Temperature variation modifies the peak potential and current density but does not affect the charge density of the cathodic or anodic feature. Temperature-dependent studies allow us to determine the thermodynamic state function for the H(UPD) adsorption and desorption. Delta G degrees(ads)(H(UPD))assumes values from -4 to -12 kJ mol(-1), while has values from 9 to 14 kJ mol(-1). The values of delta Delta G degrees (delta Delta G degrees = delat Delta G degrees(ads) + delta Delta D degrees(des)) decrease almost linearly from 6 kJ mol(-1) at theta(H(UPD) --> 0 to 0 kJ mol(-1) at theta(H(UPD) --> 1. The nonzero values of delta Delta G degrees testify that the adsorbing and desorbing H(UPD) adatoms interact with an energetically different substrate. The lateral interactions changed from repulsive (omega = 29 kJ mol(-1) at theta(H(UPD) --> 0) to attractive (omega = -28 kJ mol(-1) at theta(H(UPD) --> 1) as the H(UPD) coverage increases. The values of delta S degrees(ads)(H(UPD)) increase from 19 to 56 J K(-1) mol(-1), while those of delta S degrees(des)(H(UPD)) decrease from 45 to -30 J K(-1) mol(-1) with an increase of H(UPD) coverage. The values of delta H degrees(des)(H(UPD)) and delta H degrees(des)(H(UPD)) vary from 0 to 27 kJ mol(-1). The Pt(111)-H(UPD) surface bond energy at the benzene-modified Pt(111) electrode falls in the 191-218 kJ mol(-1) range and is weaker than in the case of the unmodified Pt(111) electrode in the same electrolyte.     

Computational studies of Cu(II)/Met and Cu(I)/Met binding motifs relevant for the chemistry of Alzheimer's disease

A systematic study of the binding motifs of Cu(II) and Cu(I) to a methionine model peptide, namely, N-formylmethioninamide 1, has been carried out by quantum chemical computations. Geometries of the coordination modes obtained at the B3LYP/6-31G(d) level of theory are discussed in the context of copper coordination by the peptide backbone and the S atom of a methionine residue in peptides with special emphasis on Met35 of the amyloid-beta peptide (Abeta) of Alzheimer's disease. The relative binding free energies in the gas phase, DeltaG(g), are calculated at the B3LYP/6-311+G(2df,2p)//B3LYP/6-31G(d) level of theory, and the solvation affects are included by means of the COSMO model to obtain the relative binding energies in solution, DeltaG(aq). A free energy of binding, DeltaG(aq) = -19.4 kJ mol(-1), relative to aqueous Cu(II) and the free peptide is found for the most stable Cu(II)/Met complex, 12. The most stable Cu(I)/Met complex, 23, is bound by -15.6 kJ mol(-1) relative to the separated species. The reduction potential relative to the standard hydrogen electrode is estimated to be E degrees (12/23) = 0.41 V. On the basis of these results, the participation of Met35 as a low affinity binding site of Cu(II) in Abeta, and its role in the redox chemistry underlying Alzheimer's disease is discussed.     

Chlorobenzylidine-herring sperm DNA interaction: binding mode and thermodynamic studies

The interaction of chlorobenzylidine with herring sperm DNA has been investigated by fluorescence, absorption, DNA melting experiment and differential scanning calorimetry (DSC). When bound to DNA, chlorobenzylidine shows hypochromism and red shift in absorption spectra, fluorescence quenching and polarization increasing in fluorescence spectra and increasing in DNA melting temperature. These spectral characteristics strongly support intercalation of chlorobenzylidine into herring sperm DNA. Scatchard plots constructed from fluorescence titration data give a binding constant of 3.2 x 10(4) M(-1) and a binding site size of six base pairs per bound drug molecule. The intercalative interaction is exothermic with a van't Hoff enthalpy of -30.6 kJ mol(-1). This result is obtained from DSC experiment. In addition, DeltaG degrees =-28.5 kJ mol(-1), and DeltaS degrees =-7.1 J mol(-1) K(-1). These results show that the binding of chlorobenzylidine to herring sperm DNA is exothermic.     

Hydroxylation of phenolic compounds by a peroxodicopper(II) complex: further insight into the mechanism of tyrosinase

The dicopper(I) complex [Cu2(MeL66)]2+ (where MeL66 is the hexadentate ligand 3,5-bis-{bis-[2-(1-methyl-1H-benzimidazol-2-yl)-ethyl]-amino}-meth ylbenzene) reacts reversibly with dioxygen at low temperature to form a mu-peroxo adduct. Kinetic studies of O2 binding carried out in acetone in the temperature range from -80 to -55 degrees C yielded the activation parameters DeltaH1(not equal) = 40.4 +/- 2.2 kJ mol(-1), DeltaS1)(not equal) = -41.4 +/- 10.8 J K(-1) mol(-1) and DeltaH(-1)(not equal) = 72.5 +/- 2.4 kJ mol(-1), DeltaS(-1)(not equal) = 46.7 +/- 11.1 J K(-1) mol(-1) for the forward and reverse reaction, respectively, and the binding parameters of O2 DeltaH degrees = -32.2 +/- 2.2 kJ mol(-1) and DeltaS degrees = -88.1 +/- 10.7 J K(-1) mol(-1). The hydroxylation of a series of p-substituted phenolate salts by [Cu2(MeL66)O2]2+ studied in acetone at -55 degrees C indicates that the reaction occurs with an electrophilic aromatic substitution mechanism, with a Hammett constant rho = -1.84. The temperature dependence of the phenol hydroxylation was studied between -84 and -70 degrees C for a range of sodium p-cyanophenolate concentrations. The rate plots were hyperbolic and enabled to derive the activation parameters for the monophenolase reaction DeltaH(not equal)ox = 29.1 +/- 3.0 kJ mol(-1), DeltaS(not equal)ox = -115 +/- 15 J K(-1) mol(-1), and the binding parameters of the phenolate to the mu-peroxo species DeltaH degrees(b) = -8.1 +/- 1.2 kJ mol(-1) and DeltaS degrees(b) = -8.9 +/- 6.2 J K(-1) mol(-1). Thus, the complete set of kinetic and thermodynamic parameters for the two separate steps of O2 binding and phenol hydroxylation have been obtained for [Cu2(MeL66)]2+.     

Gaseous rust: thermochemistry of neutral and ionic iron oxides and hydroxides in the gas phase

The experimental and theoretical thermochemistry of the gaseous neutral and ionic iron oxides and hydroxides FeO, FeOH, FeO(2), OFeOH, and Fe(OH)(2) and of the related cationic water complexes Fe(H(2)O)(+), (H(2)O)FeOH(+), and Fe(H(2)O)(2)(+) is analyzed comprehensively. A combination of data for the neutral species with those of the gaseous ions in conjunction with some additional measurements provides a refined and internally consistent compilation of thermochemical data for the neutral and ionic species. In terms of heats of formation at 0 K, the best estimates for the gaseous, mononuclear FeO(m)H(n)(-/0/+/2+) species with m = 1, 2 and n = 0-4 are Delta(f)H(FeO(-)) = (108 +/- 6) kJ/mol, Delta(f)H(FeO) = (252 +/- 6) kJ/mol, Delta(f)H(FeO(+)) = (1088 +/- 6) kJ/mol, Delta(f)H(FeOH) = (129 +/- 15) kJ/mol, Delta(f)H(FeOH(+)) = (870 +/- 15) kJ/mol, Delta(f)H(FeO(2)(-)) = (-161 +/- 13) kJ/mol, Delta(f)H(FeO(2)) = (67 +/- 12) kJ/mol, Delta(f)H(FeO(2)(+)) = (1062 +/- 25) kJ/mol, Delta(f)H(OFeOH) = (-84 +/- 17) kJ/mol, Delta(f)H(OFeOH(+)) = (852 +/- 23) kJ/mol, Delta(f)H(Fe(OH)(2)(-)) = -431 kJ/mol, Delta(f)H(Fe(OH)(2)) = (-322 +/- 2) kJ/mol, and Delta(f)H(Fe(OH)(2)(+)) = (561 +/- 10) kJ/mol for the iron oxides and hydroxides as well as Delta(f)H(Fe(H(2)O)(+)) = (809 +/- 5) kJ/mol, Delta(f)H((H(2)O)FeOH(+)) = 405 kJ/mol, and Delta(f)H(Fe(H(2)O)(2)(+)) = (406 +/- 6) kJ/mol for the cationic water complexes. In addition, charge-stripping data for several of several-iron-containing cations are re-evaluated due to changes in the calibration scheme which lead to Delta(f)H(FeO(2+)) = (2795 +/- 28) kJ/mol, Delta(f)H(FeOH(2+)) = (2447 +/- 30) kJ/mol, Delta(f)H(Fe(H(2)O)(2+)) = (2129 +/- 29) kJ/mol, Delta(f)H((H(2)O)FeOH(2+)) = 1864 kJ/mol, and Delta(f)H(Fe(H(2)O)(2)(2+)) = (1570 +/- 29) kJ/mol, respectively. The present compilation thus provides an almost complete picture of the redox chemistry of mononuclear iron oxides and hydroxides in the gas phase, which serves as a foundation for further experimental studies and may be used as a benchmark database for theoretical studies.     

Reactions of vinyl acetate and vinyl trifluoroacetate with cationic diimine Pd(II) and Ni(II) alkyl complexes: identification of problems connected with copolymerizations of these monomers with ethylene

Vinyl acetate (VA) and vinyl trifluoroacetate (VA(f)) react with [(NwedgeN)Pd(Me)(L)][X] (M = Pd, Ni, (NwedgeN) = N,N'-1,2-acenaphthylenediylidene bis(2,6-dimethyl aniline), Ar(f) = 3,5-trifluoromethyl phenyl, L = Ar(f)CN, Et2O; X = B(Ar(f))4-, SbF6-) to form pi-adducts 3 and 5 at -40 degrees C. Binding affinities relative to ethylene have been determined. Migratory insertion occurs in a 2,1 fashion (DeltaG++ = 19.4 kcal/mol, 0 degrees C for VA, and 17.4 kcal/mol, -40 degrees C for VA(f)) to yield five-membered chelate complexes [(NwedgeN)Pd(kappa2-CH(Et)(OC(O)-CH3))]+, 4, and [(NwedgeN)Pd(kappa2-CH(Et)(OC(O)CF3))]+, 6. When VA is added to [(NwedgeN)Ni(CH3)]+, an equilibrium mixture of an eta2 olefin complex, 8c, and a kappa-oxygen complex, 8o, results. Insertion occurs from the eta2 olefin complex, 8c (DeltaG++ = 15.5 kcal/mol, -51 degrees C), in both a 2,1 and a 1,2 fashion to generate a mixture of five- and six-membered chelates, 9(2,1) and 9(1,2). VA(f) inserts into the Ni-CH3 bond (-80 degrees C) to form a five-membered chelate with no detectable intermediate. Thermolysis of the Pd chelates results in beta-acetate elimination from 4 (DeltaG++ = 25.5 kcal/mol, 60 degrees C) and beta-trifluoroacetate elimination from 6 (DeltaG = 20.5 kcal/mol, 10 degrees C). The five-membered Ni chelate, 9(2,1), is quite stable at room temperature, but the six-membered chelate, 9(1,2), undergoes beta-elimination at -34 degrees C. Treatment of the OAc(f) containing Pd chelate 6 with ethylene results in complete opening to the pi-complex [(NwedgeN)Pd(kappa2-CH(Et)(OAc(f)))(CH2CH2)]+ (OAc(f) = OC(O)CF3), 18, while reaction of the OAc containing Pd chelate 4 with ethylene establishes an equilibrium between 4 and the open form 16, strongly favoring the closed chelate 4 (DeltaH = -4.1 kcal/mol, DeltaS = -23 eu, K = 0.009 M(-1) at 25 degrees C). The open chelates undergo migratory insertion at much slower rates relative to those of the simple (NwedgeN)Pd(CH3)(CH2CH2)+ analogue. These quantitative studies provide an explanation for the behavior of VA and VA(f) in attempted copolymerizations with ethylene.     

Developing a new class of axial chiral phosphorus ligands: preparation and characterization of enantiopure atropisomeric phosphinines

Both enantiomers of the first atropisomeric phosphinine (1) have been isolated by using analytical HPLC on a chiral stationary phase. The enrichment of one enantiomer and a subsequent investigation into its racemization kinetics revealed a barrier for internal rotation of DeltaG(298)(double dagger) = (109.5+/-0.5) kJ mol(-1), which is in excellent agreement with the theoretically predicted value of DeltaG(298)(double dagger) =116 kJ mol(-1). Further analysis with UV and circular dichroism spectroscopies and density functional theory calculations led to the determination and assignment of the absolute configurations of both enantiomers. These results are the basis for future investigations into this new class of axially chiral phosphinine-based ligands and their possible applications in asymmetric homogeneous catalysis.     

A detailed mechanistic study of the substitution behavior of an unusual seven-coordinate iron(III) complex in aqueous solution

A detailed mechanistic study of the substitution behavior of a 3d metal heptacoordinate complex, with a rare pentagonal-bipyramidal structure, was undertaken to resolve the solution chemistry of this system. The kinetics of the complex-formation reaction of [Fe(dapsox)(H(2)O)(2)]ClO(4) (H(2)dapsox = 2,6-diacetylpyridine-bis(semioxamazide)) with thiocyanate was studied as a function of thiocyanate concentration, pH, temperature, and pressure. The reaction proceeds in two steps, which are both base-catalyzed due to the formation of an aqua-hydroxo complex (pK(a1) = 5.78 +/- 0.04 and pK(a2) = 9.45 +/- 0.06 at 25 degrees C). Thiocyanate ions displace the first coordinated water molecule in a fast step, followed by a slower reaction in which the second thiocyanate ion coordinates trans to the N-bonded thiocyanate. At 25 degrees C and pH <4.5, only the first reaction step can be observed, and the kinetic parameters (pH 2.5: k(f(I)) = 2.6 +/- 0.1 M(-1) s(-1), DeltaH(#)(f(I)) = 62 +/- 3 kJ mol(-1), DeltaS(#)(f(I)) = -30 +/- 10 J K(-1) mol(-1), and DeltaV(#)(f(I)) = -2.5 +/- 0.2 cm(3) mol(-1)) suggest the operation of an I(a) mechanism. In the pH range 2.5 to 5.2 this reaction step involves the participation of both the diaqua and aqua-hydroxo complexes, for which the complex-formation rate constants were found to be 2.19 +/- 0.06 and 1172 +/- 22 M(-1) s(-1) at 25 degrees C, respectively. The more labile aqua-hydroxo complex is suggested to follow an I(d) or D substitution mechanism on the basis of the reported kinetic data. At pH > or =4.5, the second substitution step also can be monitored (pH 5.5 and 25 degrees C: k(f(II)) = 21.1 +/- 0.5 M(-1) s(-1), DeltaH(#)(f(II)) = 60 +/- 2 kJ mol(-1), DeltaS(#)(f(II)) = -19 +/- 6 J K(-1) mol(-1), and DeltaV(#)(f(II)) = +8.8 +/- 0.3 cm(3) mol(-1)), for which an I(d) or D mechanism is suggested. The results are discussed in terms of known structural parameters and in comparison to relevant structural and kinetic data from the literature.     

Oxidation of a guanine derivative coordinated to a Pt(IV) complex initiated by intermolecular nucleophilic attacks

In this study we report that fac-[Pt(IV)(dach)(9-EtG)Cl(3)](+) (dach = d,l-1,2-diaminocyclohexane, 9-EtG = 9-ethylguanine) in high pH (pH 12) or phosphate solution (pH 7.4) produces 8-oxo-9-EtG and Pt(II) species. The reaction in H(2)(18)O revealed that the oxygen atom in hydroxide or phosphate ends up at the C8 position of 8-oxo-G. The kinetics of the redox reaction was first order with respect to both Pt(IV)-G and free nucleophiles (OH(-) and phosphate). The oxidation of G initiated by hydroxide was approximately 30～50 times faster than by phosphate in 100 mM NaCl solutions. The large entropy of activation of OH(-1) (ΔS(?) = 26.6 ± 4.3 J mol(-1) K(-1)) due to the smaller size of OH(-) is interpreted to be responsible for the faster kinetics compared to phosphate (ΔS(?) = -195.5 ± 11.1 J mol(-1) K(-1)). The enthalpy of activation for phosphate reaction is more favorable relative to the OH(-) reaction (ΔH(?) = 35.4 ± 3.5 kJ mol(-1) for phosphate vs. 96.6 ± 11.4 kJ mol(-1) for OH(-1)). The kinetic isotope effect of H8 was determined to be 7.2 ± 0.2. The rate law, kinetic isotope effect, and isotopic labeling are consistent with a mechanism involving proton ionization at the C8 position as the rate determining step followed by two-electron transfer from G to Pt(IV).     

Thermodynamics of binding of D-galactose and deoxy derivatives thereof to the L-arabinose-binding protein

We report the thermodynamics of binding of d-galactose and deoxy derivatives thereof to the arabinose binding protein (ABP). The "intrinsic" (solute-solute) free energy of binding DeltaG degrees (int) at 308 K for the 1-, 2-, 3-, and 6-hydroxyl groups of galactose is remarkably constant (approximately -30 kJ/mol), despite the fact that each hydroxyl group subtends different numbers of hydrogen bonds in the complex. The substantially unfavorable enthalpy of binding (approximately 30 kJ/mol) of 1-deoxygalactose, 2-deoxygalactose, and 3-deoxygalactose in comparison with galactose, cannot be readily accounted for by differences in solvation, suggesting that solute-solute hydrogen bonds are enthalpically significantly more favorable than solute-solvent hydrogen bonds. In contrast, the substantially higher affinity for 2-deoxygalactose in comparison with either 1-deoxygalactose or 3-deoxygalactose derives from differences in the solvation free energies of the free ligands.     

NH tautomerism in the natural chlorin derivatives

The NH tautomerism of five Mg-free chlorophyll a and b derivatives 2-6 was studied utilizing NMR spectroscopy and molecular modeling. The results from the dynamic NMR measurements of the chlorins revealed that substituent effects contribute crucially to the free energy of activation (DeltaG(double dagger)) in the NH tautomeric processes. An intermediate tautomer for the total tautomeric NH exchange in a chlorin was observed for the first time, when the (1)H NMR spectra of chlorin e(6) TME (3) and rhodin g(7) TME (4) (TME = trimethyl ester) were measured at lower temperatures. The lower energy barriers (DeltaG(1)(double dagger)) obtained for the formation of the intermediate tautomers of 3 and 4, assigned to the N(22)-H, N(24)-H trans-tautomer, were 10.8 and 10.6 kcal/mol, respectively. The energy barrier (DeltaG(2)(double dagger) value) for the total tautomeric NH exchange in the five chlorins was found to vary from 13.6 kcal/mol to values higher than 18 kcal/mol. The lowest DeltaG(2)(double dagger) value (13.6 kcal/mol) was obtained for rhodochlorin XV dimethyl ester (2), which was the only chlorophyll derivative lacking the C(15) substituent. In the case of chlorins 4 and 5, the steric crowding around the methoxycarbonylmethyl group at C(15) raised the DeltaG(2)(double dagger) activation free-energy to 17.1 kcal/mol. However, the highest energy barrier with DeltaG(2)(double dagger) > 18 kcal/mol was observed for the NH exchange of pyropheophorbide a methyl ester (6), possessing the macrocycle rigidifying isocyclic ring E. Our results demonstrate that the steric strain, arising either from the steric crowding around the bulky substituent at C(15) or the macrocycle rigidifying isocyclic ring E, slows down the NH tautomeric process. We suggest that deformations in the chlorin skeleton are closely connected to the NH tautomeric exchange and that the exchange occurs by a stepwise proton-transfer mechanism via a hydrogen bridge.     

Structure, reactivity and thermochemical properties of protonated lactic acid

The protonation energetics of lactic acid (LA) were experimentally determined by the kinetic method including the entropy effect. The values (proton affinity, PA(LA) = 817.4 +/- 4.3 kJ mol(-1); protonation entropy, DeltaS degrees (p)(LA) = -2 +/- 5 J K(-1) mol(-1); gas-phase basicity, GB(LA) = 784.5 +/- 4.5 kJ mol(-1)) agree satisfactorily with computed G2(MP2) expectations (PA(LA) = 811.8 kJ mol(-1); DeltaS degrees (p)(LA) = -7.1 J K(-1) mol(-1); GB(LA) = 777.4 kJ mol(-1)). The fragmentation behaviour of protonated lactic acid (LAH(+)) is dominated by carbon monoxide loss followed by elimination of a water molecule. Direct dehydration of LAH(+) is only a high-energy process hardly competitive with the CO loss. A complete mechanistic scheme, based on MP2/6-31G* calculations, is proposed; it involves isomerization of the various protonated forms of LA and the passage through the ion-neutral complex between the 2-hydroxypropyl acylium cation and a water molecule.     

Kinetics and mechanism of hydrolysis of a model phosphate diester by [Cu(Me3tacn)(OH2)2]2+ (Me3tacn = 1,4,7-trimethyl-1,4,7-triazacyclononane)

The kinetics of hydrolysis of bis(p-nitrophenyl)phosphate (BNPP) by [Cu(Me3tacn)(OH2)2]2+ has been studied by spectrophotometrical monitoring of the release of the p-nitrophenylate ion from BNPP. The reaction was followed for up to 8000 min at constant BNPP concentration (15 microM) and ionic strength (0.15 M) and variable concentration of complex (1.0-7.5 mM) and temperature (42.5-65.0 degrees C). Biphasic kinetic traces were observed, indicating that the complex promotes the cleavage of BNPP to NPP [(p-nitrophenyl)phosphate] and then cleavage of the latter to phosphate, the two processes differing in rate by 50-100-fold. Analysis of the more amenable cleavage of BNPP revealed that the rate of BNPP cleavage is among the highest measured for mononuclear copper(II) complexes and is slightly higher than that reported for the close analogue [Cu(iPr3tacn)(OH2)2]2+. Detailed analysis required the determination of the pKa for [Cu(Me3tacn)(OH2)2]2+ and the constant for the dimerization of the conjugate base to [(Me3tacn)Cu(OH)2Cu(Me3tacn)]2+ (Kdim). Thermodynamic parameters derived from spectrophotometric pH titration and the analysis of the kinetic data were in reasonable agreement. Second-order rate constants for cleavage of BNPP by [Cu(Me3tacn)(OH2)(OH)]+ and associated activation parameters were obtained from initial rate analysis (k = 0.065 M(-1) s(-1) at 50.0 degrees C, deltaH = 56+/-6 kJ mol(-1), deltaS = -95+/-18 J K(-1) mol(-1)) and biphasic kinetic analysis (k = 0.14 M(-1) s(-1) at 50.0 degrees C, deltaH = 55+/-6 kJ mol(-1), deltaS = -92+/-20 J K(-1) mol(-1)). The negative entropy of activation is consistent with a concerted mechanism with considerable associative character. The complex was found to catalyze the cleavage of BNPP with turnover rates of up to 1 per day. Although these turnover rates can be considered low from an application point of view, the ability of the complexes to catalyze phosphate ester cleavage is clearly demonstrated.