The quaternary structure of proteins

Many protein molecules, particularly those with high molecular weights, consist not of a single polypeptide chain, but form a complex made up from several polypeptide chains. This structure, which can be reversibly broken down, is known as the quaternary structure. A number of metabolic phenomena can be explained on a molecular basis by invoking the quaternary structure.     

The structure of the quaternary alkaloid macrosalhine

From the stem bark of Alstonia macrophylla Wall. a new quaternary alkaloid macrosalhine, C₂₁H₂₇O₂N, has been isolated in small amounts as chloride or thiocyanate. On the basis of its chemical transformations and particularly its spectral properties (NMR., mass) the structure 1 has been proposed for it. Macrosalhin therefore represents a new skeletal type in the alkaloid field.     

Characterization of silica-coated tobacco mosaic virus

The deposition of silica on the surface of tobacco mosaic virus (TMV) is achieved at a higher pH (>7) as a means to enhance its usefulness as a template for the synthesis of nanostructures. Electron energy loss spectroscopy definitively shows the presence of a silica shell on the surface of the TMV while small angle X-ray scattering differentiates successfully between silica-coated TMV and silica particles in the presence of uncoated TMV. Importantly, coating reactions done in a 50% w/v methanol/water solution produce smaller silica nanostructures during the condensation of the hydrolysis intermediates, possibly aiding in obtaining uniform coating. Furthermore, TMV-templated silica coatings are found to enhance the stability of the virus particle in methanol at conditions that would ordinarily disrupt the assembled particle. Combined these findings demonstrate that TMV can function as an efficient template for the controlled deposition of silica at neutral pH.     

Dual-surface modification of the tobacco mosaic virus

The protein shell of the tobacco mosaic virus (TMV) provides a robust and practical tubelike scaffold for the preparation of nanoscale materials. To expand the range of applications for which the capsid can be used, two synthetic strategies have been developed for the attachment of new functionality to either the exterior or the interior surface of the virus. The first of these is accomplished using a highly efficient diazonium coupling/oxime formation sequence, which installs >2000 copies of a material component on the capsid exterior. Alternatively, the inner cavity of the tube can be modified by attaching amines to glutamic acid side chains through a carbodiimide coupling reaction. Both of these reactions have been demonstrated for a series of substrates, including biotin, chromophores, and crown ethers. Through the attachment of PEG polymers to the capsid exterior, organic-soluble TMV rods have been prepared. Finally, the orthogonality of these reactions has been demonstrated by installing different functional groups on the exterior and interior surfaces of the same capsid assemblies.     

The crystal structure and electric conductivity of new quaternary chalcogenide halide CuHgSI

A novel compound CuHgSI was synthesized by solid-state reaction of CuI and HgS. The space group of the low-temperature phase has been determined to be Pna2₁ (No. 33) by the Rietveld refinement using the powder X-ray diffraction pattern. The electric conductivity at 491 K measured by the AC impedance method was 1.1×10⁻⁵ S cm⁻¹. The ionic transport number measurements indicated that the Cu⁺ ions constitute the majority charge carriers in these samples. The electronic contribution to the conduction process is small in comparison with the Cu⁺ ionic contribution.     

Coagulation of tobacco mosaic virus in alcohol-water-LiCl solutions

The coagulation and colloidal stability of tobacco mosaic virus (TMV) in alcohol-water-LiCl solutions were studied. Without the addition of LiCl salt, the coagulation was promoted by the increase of hydrophobicity of the alcohols that is proportional to their alkyl chain length and concentration. Addition of the LiCl salt reduced the electrostatic repulsion between TMV particles resulting in coagulation in methanol-water and ethanol-water solutions. In water-alcohol-LiCl mixture, the coagulation of TMV was driven by both the hydrophobic interaction of the solution and the screening effect of the salt simultaneously. To understand the particle-particle interaction during the coagulation, the interaction energy was calculated using DLVO theory. Considering the electrostatic repulsive energy, van der Waals attractive energy, and hydrophobic interaction energy, the total energy profiles were obtained. The experiment and model calculation results indicated that the increase of alcohol concentration would increase hydrophobic attraction energy so that the coagulation is promoted. These results provide the fundamental understanding on the coagulation of biomolecular macromolecules.     

The mosaic structure design to improve the anchoring strength of SiOx@C@Graphite anode

Silicon oxide (SiO_x)-based anodes have aroused great interest as the most promising alternative anode in the practical application of high-performance lithium-ion batteries. However, the electrochemical performance is inhibited because of the large volume change, and the electrode structure deteriorates during the cycling process, which hinders their practical application. In this article, a novel fabrication method for the synthesis of high-performance SiO_x@C@Graphite composites is presented. SiO_x particles are anchored on the graphite surface by chemical vapor deposition and compression molding. This structure makes up the shortcomings of poor electrical conductivity and poor bonding strength between SiO_x and graphite particles. It is beneficial to form a stable solid electrolyte interface and helps to maintain the structural integrity of electrode materials. As a result, the synthetic SiO_x@C@Graphite anode shows a high reversible capacity (2698.8 mA h), excellent cycle stability (about 76.9% capacity retention for 500 cycles) and a superior rate ability. Our research hopes to provide a new idea for improving the bonding strength of the surface coating.     

Encapsidation of nanoparticles by red clover necrotic mosaic virus

Icosahedral virus capsids demonstrate a high degree of selectivity in packaging cognate nucleic acid genome components during virion assembly. The 36 nm icosahedral plant virus Red clover necrotic mosaic virus (RCNMV) packages its two genomic ssRNAs via a specific capsid protein (CP) genomic RNA interaction. A 20-nucleotide hairpin structure within the genomic RNA-2 hybridizes with RNA-1 to form a bimolecular complex, which is the origin of assembly (OAS) in RCNMV that selectively recruits and orients CP subunits initiating virion assembly. In this Article, an oligonucleotide mimic of the OAS sequence was attached to Au, CoFe2O4, and CdSe nanoparticles ranging from 3 to 15 nm, followed by addition of RNA-1 to form a synthetic OAS to direct the virion-like assembly by RCNMV CP. Dynamic light scattering (DLS) and transmission electron microscopy (TEM) measurements were consistent with the formation of virus-like particles (VLPs) comparable in size to native RCNMV. Attempts to encapsidate nanoparticles with diameters larger than 17 nm did not result in well-formed viral capsids. These results are consistent with the presence of a 17 nm cavity in native RCNMV. Covalent linkage of the OAS to nanoparticles directs RNA-dependent encapsidation and demonstrates that foreign cargo can be packaged into RCNMV virions. The flexibility of the RCNMV CP to encapsidate different materials, as long as it is within encapsidation constraint, is a critical factor to be considered as a drug delivery and diagnostic vehicle in biomedical applications.     

Binding the tobacco mosaic virus to inorganic surfaces

We studied the adsorption behavior and surface chemistry of the tobacco mosaic virus (TMV) on well-defined metal and insulator surfaces. TMV serves as a tubular supramolecular model system with precisely known surface termination. We show that if the surface chemistry of the substrate and the pH-dependent chemistry of the molecular surface match, for example, by hydrogen bonding, a strong adsorption occurs, and lateral movement is impeded. Due to the immobilization, the virion can be imaged by atomic force microscopy (AFM) in contact mode. We also used self-assembled monolayers with an acyl chloride group to induce covalent bonding via ester formation. Noncontact AFM proved that TMV keeps its cylindrical cross section only under weak adsorption conditions, that is, on hydrophobic surfaces, while on hydrophilic substrates a deformation occurs to maximize the number of interacting chemical groups.     

On the structure of the melting diagrams of quaternary systems

Topological and geometric images of invariant and monovariant reactions with the participation of melt in quaternary systems were presented. A network of invariant points and monovariant lines characterizes the structure of the liquidus hypersurface. Each invariant reaction produces an association of four solid phases, which is an element of the solidus hypersurface. Its topology is conveniently described by a graph of adjacency of tetrahedra that partition the composition tetrahedron of a system with a given set of binary, ternary, and quaternary compounds. It was demonstrated that it is possible to construct a spatial network of invariant points and monovariant lines on the liquidus hypersurface using the tetrahedron incidence graph with consideration for the phase reactions occurring in the system.     

Structural comparisons of the aggregates of tobacco mosaic virus protein

The coat protein of tobacco mosaic virus forms numerous aggregates, including the small A-protein, the disk, and two helical forms. The structures of the disk, the helical protein forms, and the virus are compared. Most of the differences are in the conformation of the chain between residues 89 and 113, which lies in the region of protein at the center of the virus, inside the RNA. It is disordered in the disk, but has a fixed conformation in the virus and the protein helices. The differences between the virus and the two helical protein forms are largely in the conformations of arginines and carboxylic acids in this region.     

Photochemistry of tobacco mosaic virus RNA. Effect of HCN

Abstract— In attempting to sort out possible mechanisms of photoreactivation of tobacco mosaic virus RNA (TMV-RNA) inactivated by ultraviolet radiation (u.v.) in buffer of ionic strength 0.25, we have investigated the effect of HCN on the quantum yield for u.v. inactivation of TMV-RNA and on the percent photoreactivation of inactivated TMV-RNA. Some photo-products produced by irradiation of model substances, polyuridylic acid (poly U) and polycytidylic acid (poly C), in the presence of HCN have also been studied. The ratio of the quantum yield for inactivation of TMV-RNA in the presence of HCN to that in the absence of HCN is 1.5, under non-photoreactivating conditions. By comparison, the ratio of the initial rates of loss of uracil residues in poly U under comparable conditions is 1.6; by contrast, the rate of loss of cytosine residues in poly C is unaffected by HCN. This similarity of ratios between poly U and TMV-RNA suggests that two of the mechanisms of u.v. inactivation of TMV-RNA at high ionic strength are akin to known reactions of uracil residues in poly U, i.e. hydrate and dimer formation. The photohydration reaction in poly U, as measured by the heat reversal of hydrated residues to uracil residues, is almost abolished by HCN, and the rate of dimerization, as measured by the appearance of dimer containing oligonucleotides following enzymatic hydrolysis of irradiated poly U, is reduced to half by HCN. HCN does not affect the rate of hydration of cytosine residues in poly C. Since photoreactivation of RNA inactivated in presence of HCN is only 60 per cent of that in absence of HCN it is suggested that uracil dimers are somehow involved in photoreactivation of TMV-RNA inactivated at high ionic strength.     

Antiviral activity of polysaccharides against infection of tobacco mosaic virus

In the course of searching for antiviral substances to tobacco mosaic virus (TMV), it was found that polysaccharides have a high inhibitory activity against TMV infection. The leaves of Xanthi NN tobacco were rubbed with the mixtures of TMV and polysaccharides such as chondroitin sulfate C- and A- types. The addition of polysaccharides to the inoculum solution greatly reduced the number of local lesions formed on the inoculated leaves. Here the polysaccharide did not completely prevent virus entry into the leaves and the virus particles may penetrate and multiply in leaves without forming lesions. Although the electron micrograph showed that the virus suspension was almost monodisperse, the addition of polysaccharides caused TMV to form large raft-like aggregates. The TMV solution became turbid after the addition of a large amount of polysaccharides. A threshold concentration of polysaccharides exists for virus precipitation, which is independent of the virus concentration. The size of polysaccharide at the threshold concentration agreed well with that obtained by light scattering method. The strength of the interaction between TMV and polysaccharides was found to be related to the degree of inhibitory activity of polysaccharides.     

Ab initio electronic structure of NiCoCrGa half-metallic quaternary Heusler compound

In this study, ab initio calculation results of electronic structure and elastic properties of NiCoCrGa quaternary Heusler compound are presented. Plane wave pseudopotential method is used with spin-polarized Generalized Gradient Approximation (σ-GGA) scheme of the Density Functional Theory (DFT). Static elastic constants of the cubic system satisfy mechanical stability criteria. The cubic phase of the system remains stable under tetragonal distortion. The spin-polarized electronic band structures and density of electronic states indicate a metallic band structure for majority spins, while minority spin structure has semiconducting character. This situation displays a slightly disturbed half-metallic behavior with high-spin polarization ratio (P = 0.961) at Fermi level E_F. Two electronic bands of minority spins resulting from d-states of cobalt atom cross Fermi level at Γ-point. This situation gives a finite but very low density of states at E_F. The material can be classified as a new half-metallic ferromagnet for spintronic applications.     

The influence of the structure of the higher quaternary ammonium salt cation on chloride-nitrate exchange

It was found that the size of quaternary ammonium salt cations strongly influenced the log$ K_{Cl^ - }^{NO_3^ - } $ K_{Cl^ - }^{NO_3^ - } value, which was explained by the special features of ionic association in the organic phase. The use of 3,4,5-tridodecyloxybenzyltridodecylammonium nitrate as an electrode active substance could increase the selectivity of the NO₃⁻-selective electrode with respect to Cl⁻ ions.