Thermal degradation behavior of a carboxylic acid-terminated amphiphilic block copolymer poly(ethylene)-b-poly(ethylene oxide)

The thermal degradation of an amphiphilic block copolymer poly(ethylene)-b-poly(ethylene oxide)-carboxylic acid terminated (PE-b-80%PEO–CH₂COOH) and its salt obtained as intermediary product from chemical oxidation of the end group of poly(ethylene)-b-poly(ethylene oxide) (PE-b-80%PEO) has been studied using a thermogravimetric mass spectrometry (TG/MS) coupled system. The isothermal fragmentation of PE-b-80%PEO–CH₂COOH showed a more complex fragmentation pattern than PE-b-80%PEO owing to the simultaneous occurrence of the polyether block and the carboxylic end group fragmentations. This led to the appearance of four overlapping ion current peaks of fragments with m/z 44 and two peaks relative to m/z 18 at different times by acid-terminated copolymer. For the PE-b-80%PEO copolymer, two ion current peaks associated to m/z 44 and one large peak relative to m/z 18 fragments were detected. The intermediary product (PE-b-80%PEO–CH₂COO⁻ K⁺) showed differences related to the fragmentation behavior. It has more defined ion current signals and presented characteristic peaks attributed to m/z 43 fragment at the very beginning of the thermal degradation process, which it not detected in the acid copolymer.     

A detailed analysis of the complete hydrogen and carbon scrambling and fragmantation reactions of boron-containing cationic species in the mass spectrometer

A detailed analysis of the mass spectral behavior of trialkylboranes and deuterium and ¹³C labeled tri-n-butylborane, and comparison with the ion cyclotron resonance behavior, have revealed several unique features and herefore unrecognized rearrangement and fragmantation reactions:(1)the occurrence of intial fragmentation of the parent ion with apparently nearly exclusive loss of one complete alkyl radical; (2) the extensive formation of boron-containing spiecies (>% of the total ion current)in the mass spectrometer relative to the virtual absence (<5%) of such spieces in the ion cyclotron resonance spectrum; (3) the dominant formation of boron-containing species of the composition [CⁿH²ⁿ⁺²B]⁺ with [C²H⁶B]+ generally being the base peak; (4) the formation of appreciable quantities of alkane molecular ions (5 to 10% of the total ion current) up to [R²]+. (from R³B); (5) the characterization of a fragmentation reaction involving the loss of CH²; (6) the observation that very extensive hydrogen and carbon scrmbling occurs in the ions formed after the initial fragmentation of the parent ion. A mechanism which satisfactorily accounts for the fragmentation and rearrangement reactions is proposed which involves the reversible formation and rearrangement of protonated boracyclopropanes and cyclopropanes formed by cationic insertions in ß-C? H bonds.     

Gas-Phase Fragmentation Analysis of Nitro-Fatty Acids

Nitro-fatty acids are electrophilic signaling mediators formed in increased amounts during inflammation by nitric oxide and nitrite-dependent redox reactions. A more rigorous characterization of endogenously-generated species requires additional understanding of their gas-phase induced fragmentation. Thus, collision induced dissociation (CID) of nitroalkane and nitroalkene groups in fatty acids were studied in the negative ion mode to provide mass spectrometric tools for their structural characterization. Fragmentation of nitroalkanes occurred mainly through loss of the NO₂^- anion or neutral loss of HNO₂. The CID of nitroalkenes proceeds via a more complex cyclization, followed by fragmentation to nitrile and aldehyde products. Gas-phase fragmentation of nitroalkene functional groups with additional γ or δ unsaturation occurred through a multiple step cyclization reaction process, leading to 5 and 6 member ring heterocyclic products and carbon chain fragmentation. Cyclization products were not obtained during nitroalkane fragmentation, highlighting the role of double bond π electrons during NO₂^- rearrangements, stabilization and heterocycle formation. The proposed structures, mechanisms and products of fragmentation are supported by analysis of ¹³C and ¹⁵N labeled parent molecules, 6 different nitroalkene positional isomers, 6 nitroalkane positional isomers, accurate mass determinations at high resolution and quantum mechanics calculations. Multiple key diagnostic ion fragments were obtained through this analysis, allowing for the precise placement of double bonds and sites of fatty acid nitration, thus supporting an ability to predict nitro positions in biological samples.     

Chemical ionization mass spectra of mononitroarenes

The H₂ and CH₄ chemical ionization mass spectra of a selection of substituted nitrobenzenes have been determined. It is shown that reduction of the nitro group to the amine is favoured by high source temperatures and the presence of water in the ion source. The H₂ chemical ionization mass spectra are much more useful for distinguishing between isomeric compounds than the CH₄ CI mass spectra because of the more extensive fragmentation. For ortho substituents bearing a labile hydrogen abundant [MH ? H₂O]⁺ fragments are observed. When the substituent is electron-releasing both ortho and para substituted nitrobenzenes show abundant [MH? OH]⁺ fragment ions while meta substituted compounds show abundant loss of NO and NO₂ from [MH]⁺. The latter fragmentation is interpreted in terms of protonation para to the substituent or ortho to the vitro function, while the first two fragmentation routes arise from protonation at the nitro group. When the substituent is electron-attracting the chemical ionization mass spectra of isomers are very similar except for the H₂O loss reaction for ortho compounds.     

The Loss of a hydroxyl group from the molecular ions of alkylnitrobenzenes

It is confirmed that the loss of HO˙ from the molecular ion of o-nitrotoluene involves exclusively a hydrogen from the methyl group. However, in higher homologues hydrogen atoms from non-benzylic sites are also implicated. With such compounds this fragmentation mode is shown not only by the ortho but, to a lesser extent, by the meta and para isomers as well. The proportion of the total ion current borne by the [M – 17]⁺ ion follows the order ortho > meta > para, which is attributed to substituent migration around the ring with a hydroxyl radical only being lost when the groups are on adjacent ring atoms. Other ions present in the spectra point to interaction between substituents to form a new heterocyclic ring.     

Sulfides: chemical ionization induced fragmentation studied with Proton Transfer Reaction‐Mass Spectrometry and density functional calculations

We report the energy‐dependent fragmentation patterns upon protonation of eight sulfides (organosulfur compounds) in Proton Transfer Reaction‐Mass Spectrometry (PTR‐MS). Studies were carried out, both, experimentally with PTR‐MS, and with theoretical quantum‐chemical methods. Charge retention usually occurred at the sulfur‐containing fragment for short chain sulfides. An exception to this is found in the unsaturated monosulfide allylmethyl sulfide (AMS), which preferentially fragmented to a carbo‐cation at m/z 41, C₃H₅⁺. Quantum chemical calculations (DFT with the M062X functional 6‐31G(d,p) basis sets) for the fragmentation reaction pathways of AMS indicated that the most stable protonated AMS cation at m/z 89 is a protonated (cyclic) thiirane, and that the fragmentation reaction pathways of AMS in the drift tube are kinetically controlled. The protonated parent ion MH⁺ is the predominant product in PTR‐MS, except for diethyl disulfide at high collisional energies. The saturated monosulfides R‐S‐R’ (with R<R’) have little or no fragmentation, at the same time the most abundant fragment ion is the smaller R‐S⁺ fragment. The saturated disulfides R‐S‐S‐R display more fragmentation than the saturated monosulfides, the most common fragments are disulfide containing fragments or long‐chain carbo‐cations. The results rationalize fragmentation data for saturated monosulfides and disulfides and represent a detailed analysis of the fragmentation of an unsaturated sulfide. Apart from the theoretical interest, the results are in support of the quantitative analysis of sulfides with PTR‐MS, all the more so as PTR‐MS is one of a few techniques that allow for ultra‐low quantitative analysis of sulfides. Copyright © 2013 John Wiley & Sons, Ltd.     

Mass spectral fragmentation patterns of heterocycles. IV . Tetracyclic phenothiazines. IX. Electron impact promoted mass spectral fragmentation of pyrrolo[3,2,1-kl]phenothiazine

The mass spectral fragmentation patterns of pyrrolo[3, 2, 1-kl]phenothiazine ( 1 ) and its 1, 10-dideuterioderi-vative [2] are reported. The site of deuterium substitution in 2 was established by examination of its ¹³C nuclear magnetic resonance spectrum. The heteroaromatic stability of 1 to electron impact is exemplified by the occurrence of the molecular ion as the base peak and the formation of a reasonably intense M²⁺ ion. An intense M-1 ion is also observed. The more abundant fragment ions appear to result from sulfur ionization. Fragment ions arising from ionization of the nitrogen constitute only a small fraction of the total ion current. Proposed fragmentation pathways of 1 are supported by the detection of appropriate metastable ions, exact mass measurements, and electron impact spectrum of 2 .     

A fragmentation study of the Rhodamine 610 cation using visible‐laser desorption ionization

The fragmentation of a potential visible matrix‐assisted laser desorption ionization: Rhodamine 610 was studied under 532 nm visible irradiation, as a function of anion counter ion. It was found that at a fixed fluence, the chloride salt produced fewer fragments than those formed with ClO₄^? or BF₄^?. Evidence presented suggests that the degree of fragmentation is inversely proportional to the strength of the contact ion pair in the solid state; that is, more energy is deposited into the radical cation which can lead to fragmentation when less energy is required to separate the ion pair. Similar results were found for salts of Rhodamine 6G. Copyright © 2010 John Wiley & Sons, Ltd.     

The mass spectrometric fragmentation of n-heptane

The electron impact fragmentation of n-heptane has been investigated using ¹³C labelled derivatives. A mechanism is proposed for the loss of alkyl radicals where the cleavage of a C? C bond is coupled with the rearrangement of a hydrogen atom, thus yielding a secondary alkyl ion that eventually fragments further by a subsequent loss of olefin. For alkyl ions with less than six carbon atoms this consecutive pathway is in competition with formation directly from the molecular ion. The consecutive pathway contributes about 15% to the intensity of the alkyl ions with four and five carbon atoms and 80% for smaller ions. The electron energy dependence was studied.     

The [M − 1 ]+ quasi-molecular ion in chemical ionization mass spectrometry. Fragmentation of bis(benzyloxy)silanes by intramolecular reactions

The unusual chemical ionization mass spectrometric behavior of bis(benzyloxy)silanes showing heavy fragmentation and an [M ? 1]⁺ fragment, instead of the expected [M + 1]⁺ ion with isobutane as the reactant gas, was investigated by means of (chloromethyl)bis(benzyloxy)methylsilane and model compounds. It could be shown that probably an intramolecular hydride transfer to an adjacent proton via a six-membered transition state gives rise to the uncommon [M ? 1]⁺ quasi-molecular ion. Similar intramolecular reactions transferring a hydride, a chloro-methyl, a phenyl or a benzyl group via cyclic transition states to a neighboring electrophile are held responsible for five of the six additional major fragments. The results demonstrate that fragmentation reactions become important in chemical ionization mass spectrometry if a molecule or an initially formed cluster ion possesses reactive groups which are in close proximity to each other.     

Fragmentation characteristics of hydroxycinnamic acids in ESI‐MSn by density functional theory

This work aims to analyze the electrospray ionization multistage mass spectrometry (ESI‐MSⁿ) fragmentation characteristics of hydroxycinnamic acids (HCAs) in negative ion mode. The geometric parameters, energies, natural bond orbitals and frontier orbitals of fragments were calculated by density functional theory (DFT) to investigate mass spectral fragmentation mechanisms. The results showed that proton transfer always occurred during fragmentation of HCAs; their quasi‐molecular ions ([M − H]⁻) existed in more than one form and were mainly with the lowest energy. The fragmentation characteristics included the followings: (1) according to the different substitution position of phenolic hydroxyl group, the ring contraction reaction by CO elimination from benzene was in an increasingly difficult order: m‐phenolic hydroxyl > p‐phenolic hydroxyl > o‐phenolic hydroxyl; and (2) ortho effect always occurred in o‐dihydroxycinnamic acids (o‐diHCAs), i.e. one phenolic hydroxyl group offered H⁺, which combined with the other one to lose H₂O. In addition, there was a nucleophilic reaction during ring contraction in diHCAs that oxygen atom attacked the carbon atom binding with the other phenolic hydroxyl to lose CO₂. The fragmentation characteristics and mechanism of HCAs could be used for analysis and identification of such compounds quickly and effectively, and as reference for structural analogues by ESI‐MS. Copyright © 2017 John Wiley & Sons, Ltd.     

Decomposition of 1-(2-thienyl)alkylalkanones under electron-impact

The major fragmentation paths of the 1-(2-thienyl)alkylalkanones ionized by electron impact are delineated by means of isotopically labeled molecules, metastable ion peaks and low ionization voltage data. A prominent process is cleavage of the bond beta to the carbonyl group with the concurrent rearrangement of a hydrogen atom. Another important process is cleavage alpha to the carbonyl group to produce the thienoylium ion analogous to the benzoylium ion. As expected, the data show that increasing the chain length by two methylene groups increases the total ion current. The bulk of this increase is found in the increased ion current of the rearrangement ion with the remainder being associated with alkyl fragments and oxygenated ion species.     

Plasma desorption mass spectrometry of transition metal complexes of thio- and selenosemicarbazones of 2-acetylpyridines

Summary Californium-252 plasma desorption mass spectra were recorded for complexes of the anions of various thio-and seleno-semicarbazones of 3-acetylpyridines(1–4) with the transition metal ions iron(III) and cobalt(II). Positive ion spectra gave clear evidence of the cation present and fragmentation with loss of ligands or parts of ligands was straightforward. Negative ion spectra likewise provided evidence of the intact anion except with tetracoordinate metal halide systems [MX₄]^– which lost one or more halide atoms. Evidence of fragmentation of the ligand and recombination of the fragments with the metal ion was also observed in the negative ion mode. Spectra were used to revise the structure of a complex previously reported as [FeLCl₂]⁽¹⁾ to [FeL₂]⁺[FeCl₄]^–.     

New fragmentation pathways in the electron impact mass spectrometry of derivatized pyrano-1,3-diphenylprop-2-enones

The fragmentation patterns of closely related chalcones, cinnamoylchromans and cinnamoylchromenes, are reported to be strikingly different. The mass spectra of the first group show peaks typical of the fragmentation of simple chalcones balanced by additional fragmentation routes competing effectively with the typical chalcone fragmentation. For the other group with the introduced double bond the fragmentation is considerably changed. Initial loss of a methyl group gives rise to formation of the base peak in three of four examples. The [M – CH₃]⁺ ion decomposes further, eliminating a styrene yielding the m/z 187 ion. This process may be rationalized as a retro-Diels–Alder fragmentation of a flavanone formed on intramolecular rearrangement of the molecular ion.     

Mass spectra of sterically crowded trialkylsilyl derivatives of nucleosides

The electron impact mass spectra of tert-butyldimethylsilyl-, cyclo-tetramethylene-tert-butylsilyl and cyclo-tetramethylene-isopropylsilyl- ether derivatives of ribo- and 2′-deoxyribonucleosides are described in detail. The interpretation of fragmentation pathways of full and mixed derivatives was aided by metastable ion decomposition studies, precise mass and deuterium labelling measurements, and spectra of mixed derivatives containing the ‘passive’ (in these spectra) trimethylsilyl group. The sterically crowded silyl groups have a powerful fragmentation directing effect. Elimination of a bulky radical, R˙ (tert-butyl or isopropyl), from the molecular ion produces the siliconium ion [M? R]⁺, which is the precursor for most of the other prominent ions in the spectra. These arise from ‘siliconium ion rearrangements’ resulting from the interaction of the positively charged siliconium ion center with electron dense regions (i.e. oxygens) in the molecule, to form cyclic silyloxonium ions which subsequently decompose. Since the interacting oxygen and silicon must be sterically accessible, the fragment ion types and their abundances are very dependent upon structure. Consequently, [M? R]⁺ ions formed from 2′, 3′ or 5′-O-silyl groups give rise to different sets of daughter ions which, for the most part, are not found, or have very low abundances, in the mass spectra of underivatized or trimethylsilylated nucleosides. Detailed information on sugar and base moieties and isomeric substitution is readily obtained.     

o-nitroaniline derivatives. IV—The mass spectra of o-nitroanils

The principal feature of the mass spectra of o-nitroanils, ArCH?NC₆H₄NO₂(o-), is an intense peak corresponding to the [ArCO]⁺ ion; this implies oxygen transfer from the nitro group to the azomethine carbon during the fragmentation process. In this series of anils, loss of OH from the molecular ion is not apparently an important fragmentation pathway, in contrast to the fragmentation of o-nitrobenzylideneanilines. Benzylideneaniline derivatives with an o-nitro substituent in both rings have mass spectra which indicate interaction of both nitro groups with the ? CH?N? group, but in this series of spectra the [M—17]⁺ ion is again of low intensity.     

Fragmentation of size-selected Xe clusters: Why does the monomer ion channel dominate the Xen and ionization?

The fragmentation of the small Xe_n n=2−5 clusters following 70 eV electron impact ionization has been investigated in a size selective experiment and simulated using non-adiabatic dynamics. The experimental results show that the clusters strongly fragment to yield monomer Xe⁺ (more than 90%) and dimer Xe₂⁺ fragments (the remaining few percent). Trimer Xe₃⁺ fragments first occur from the neutral pentamers Xe₅ in a very low yield of approximately 0.3%. The present results are compared with the previous ones for Kr and Ar clusters. It is shown that the Xe and Kr clusters exhibit a qualitatively similar behavior with a strong propensity for monomer fragments, while in the Ar case dimers prevail. The theoretical calculations also reveal a strong fragmentation to the dimer and monomer fragments. However, the dimer Rg₂⁺ is predicted to be the major product for all rare gases (Rg ≡ Ar, Kr, Xe). Possible reasons for the discrepancy between theory and experiment are discussed.     

Amino and Acetamide Functional Group Effects on the Ionization and Fragmentation of Sugar Chains in Positive-Ion Mass Spectrometry

To elucidate the influence of amino (-NH₂) and acetamide (-NHCOCH₃, -NAc) groups in sugar chains on their ionization and fragmentation, cycloamyloses (cyclodextrins, CyDs) and lacto-oligosaccharide are analyzed by MALDI TOF/TOF and ESI Q-TOF mass spectrometry. CyD derivatives substituted by amino or acetamide groups are ideal analytes to extract the function group effects, which are amino-CyD with one hexosamine (HexNH₂) and acetamide-CyD with one N-acetyl hexosamine (HexNAc). Interestingly, the relative ion intensities and isotope-like patterns in their product ion spectra depend on the functional groups and ion forms of sugar chains. Consequently, the results indicate that a proton (H⁺) localizes on the amino group of the amino sugar, and that the proton (H⁺) induces their fragmentation. Sodium cation (Na⁺) attachment is independent from amino group and exerts no influence on their fragmentation patterns in amino group except for mono- and disaccharide fragment ions because there is the possibility of the reducing end effect. In contrast, a sodium cation localizes much more frequently on the acetamide group in acetamide-CyDs because the chemical species with HexNAc are stable. Thus, their ions with HexNAc are abundant. These results are consistent with the fragmentation of lacto-neo-N-tetraose and maltotetraose, suggesting that a sodium cation generally localizes much more frequently on the acetamide group in sugar chains.

More Than Charged Base Loss — Revisiting the Fragmentation of Highly Charged Oligonucleotides

Tandem mass spectrometry is a well-established analytical tool for rapid and reliable characterization of oligonucleotides (ONs) and their gas-phase dissociation channels. The fragmentation mechanisms of native and modified nucleic acids upon different mass spectrometric activation techniques have been studied extensively, resulting in a comprehensive catalogue of backbone fragments. In this study, the fragmentation behavior of highly charged oligodeoxynucleotides (ODNs) comprising up to 15 nucleobases was investigated. It was found that ODNs exhibiting a charge level (ratio of the actual to the total possible charge) of 100% follow significantly altered dissociation pathways compared with low or medium charge levels if a terminal pyrimidine base (3' or 5') is present. The corresponding product ion spectra gave evidence for the extensive loss of a cyanate anion (NCO^–), which frequently coincided with the abstraction of water from the 3'- and 5'-end in the presence of a 3'- and 5'-terminal pyrimidine nucleobase, respectively. Subsequent fragmentation of the M-NCO^– ion by MS³ revealed a so far unreported consecutive excision of a metaphosphate (PO₃ ^–)-ion for the investigated sequences. Introduction of a phosphorothioate group allowed pinpointing of PO₃ ^– loss to the ultimate phosphate group. Several dissociation mechanisms for the release of NCO^– and a metaphosphate ion were proposed and the validity of each mechanism was evaluated by the analysis of backbone- or sugar-modified ONs.