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1.
采用基于密度泛函理论的第一性原理方法和平板模型研究了CH3SH分子在Cu(111)表面的吸附反应.系统地计算了S原子在不同位置以不同方式吸附的一系列构型, 第一次得到未解离的CH3SH分子在Cu(111)表面顶位上的稳定吸附构型,该构型吸附属于弱的化学吸附, 吸附能为0.39 eV. 计算同时发现在热力学上解离结构比未解离结构更加稳定. 解离的CH3S吸附在桥位和中空位之间, 吸附能为0.75-0.77 eV. 计算分析了未解离吸附到解离吸附的两条反应路径, 最小能量路径的能垒为0.57 eV. 计算结果还表明S―H键断裂后的H原子并不是以H2分子的形式从表面解吸附而是以与表面成键的形式存在. 通过比较S原子在独立的CH3SH分子和吸附状态下的局域态密度, 发现S―H键断裂后S原子和表面的键合强于未断裂时S原子和表面的键合.  相似文献   

2.
The thermodynamics and kinetics of the surface hydrogenation of adsorbed atomic carbon to methane, following the reaction sequence C+4 H?CH+3 H?CH2+2 H?CH3+H?CH4, are studied on Fe(100) by means of density functional theory. An assessment is made on whether the adsorption energies and overall energy profile are affected when zero‐point energy (ZPE) corrections are included. The C, CH and CH2 species are most stable at the fourfold hollow site, while CH3 prefers the twofold bridge site. Atomic hydrogen is adsorbed at both the twofold bridge and fourfold hollow sites. Methane is physisorbed on the surface and shows neither orientation nor site preference. It is easily desorbed to the gas phase once formed. The incorporation of ZPE corrections has a very slight, if any, effect on the adsorption energies and does not alter the trends with regards to the most stable adsorption sites. The successive addition of hydrogen to atomic carbon is endothermic up to the addition of the third hydrogen atom resulting in the methyl species, but exothermic in the final hydrogenation step, which leads to methane. The overall methanation reaction is endothermic when starting from atomic carbon and hydrogen on the surface. Zero‐point energy corrections are rarely provided in the literature. Since they are derived from C? H bonds with characteristic vibrations on the order of 2500–3000 cm?1, the equivalent ZPE of 1/2 is on the order of 0.2–0.3 eV and its effect on adsorption energy can in principle be significant. Particularly in reactions between CHx and H, the ZPE correction is expected to be significant, as additional C? H bonds are formed. In this instance, the methanation reaction energy of +0.77 eV increased to +1.45 eV with the inclusion of ZPE corrections, that is, less favourable. Therefore, it is crucial to include ZPE corrections when reporting reactions involving hydrogen‐containing species.  相似文献   

3.
密度泛函理论研究十二烷硫醇在Au(111)面上的吸附   总被引:1,自引:0,他引:1  
采用第一性原理方法研究了十二烷硫醇(C12H25SH)分子在Au(111)面上未解离和解离吸附的结构、能量和吸附性质,在此基础上分析判断长链硫醇分子在Au(111)面吸附时S―H键的解离, 以及分子链长度对吸附结构和能量的影响. 计算了S原子在不同位置以不同方式吸附的系列构型, 结果表明在S―H键解离前和解离后,均存在两种可能的表面结构, 直立吸附构型和平铺吸附构型; 未解离的C12H25SH分子倾向于吸附在top位, 吸附能为0.35-0.38 eV; H原子解离后C12H25S基团倾向于吸附在bri-fcc位, 吸附能量为2.01-2.09 eV. 比较分析未解离吸附和解离吸附, 发现C12H25SH分子未解离吸附相较于解离吸附要稳定, 未解离吸附属于弱化学吸附.局域电子态密度和差分电荷密度分析进一步验证了S―H解离后S原子与表面之间成键的数目增加, 而且键合更强. 同时我们发现长链硫醇的吸附能量较短链硫醇的吸附能量略大, S原子与表面Au原子之间的距离略小.  相似文献   

4.
The dynamics of S(3P2,1,0; 1D2; 1S0) production from the 193 nm photodissociation of CH3SH has been examined by 2+1 resonance-enhanced-multiphoton-ionization (REMPI) techniques. Using the rate equation scheme, we have rationalized the intensities of S(3P2,1,0; 1D2; 1S0) observed according to the sequential two-photon dissociative pathways, (A): CH3SH + hv (193 nm) → CH3S + hv (193 nm) → S and (B): CH3SH + hv (193 nm) → HS + hv (193 nm) → S, as the major mechanisms for S production. We have satisfactorily fitted the photodissociation laser power dependencies for S(3P) and S(1D) produced from CH3SH by invoking photodissociation cross sections and branching ratios S(3P)/S(1D) for CH3S and HS similar to those determined previously in the 193 nm photodissociation of CH3SCH3 and H2S. This observation supports that the 193 nm photodissociation of CH3S and HS prepared from CH3SH yield predominantly S(lD) and S(3P), similar to the cases for CH3S prepared from CH3SCH3 and for HS prepared from H2S, respectively. A small amount of S(1S0) observed from the 193 nm photodissociation of CH3SH is attributed to pathway (B).  相似文献   

5.
《Fluid Phase Equilibria》2005,233(2):184-189
Total reduced sulfurs quartet (H2S, CH3SH, CH3SCH3 and CH3S2CH3) is part of a well-known environmental problem afflicting pulp mills exploiting the Kraft mill sulfate-pulp process. Utilization of ferric chelate complex of trans-1,2-cyclohexanediaminetetraacetic acid (CDTA) for the oxidative scrubbing of H2S and CH3SH in Kraft mill streams is beneficial from the standpoints of iron protection against precipitation and oxygen-mediated regenerative oxidation of the ferrous chelate CDTA. The remaining two sulfur-bearing compounds, considered not oxidizable by CDTA–Fe(III), undergo only physical absorption in such solutions, so their solubility in aqueous CDTA–Fe(III) alkaline solutions is a crucial parameter for designing the complete scrubbing-absorption process. This investigation was carried out to determine the Henry's law constants of dimethyldisulfide (DMDS) in pure water, in aqueous iron-free CDTA solutions and CDTA–Fe(III) complex solutions using the static headspace method with an estimated accuracy of 2%. Experiments with aqueous solutions of chelate concentrations varying between 38 and 300 mol m−3 were carried out at temperatures between 298 and 333 K and atmospheric pressure. It was shown that DMDS solubility decreases with increasing temperature for all systems and is not much influenced by the CDTA concentration and solution pH.  相似文献   

6.
A series of mononuclear binary and ternary Cu(I) complexes with formato, formamide, methylphenol, and methanethiolato ligands were optimized at DFT-B3LYP/6-31G** (BS1) and DFT-B3LYP/6-311++G** (BS2) levels of theory. The solvent effect was taken into account via PCM method (BS1W and BS2W, respectively). The coordination arrangement for [CuI(SCH3/S(H)CH3)(OOCH)]?/0 and [CuI(SCH3/S(H)CH3)(O(H)(C6H4)CH3)]0/+ was pseudo-linear and for [CuI(SCH3/S(H)CH3)(OOCH)(OC(H)NH2)]?/0 was pseudo-trigonal. The [CuI(S-S(H)CH3/CuI(S-SCH3)]+/0 link even to amide carbonyl and to general O(H)R residues (R=C6H5CH3). [CuI(SCH3)2(O(H)(C6H4)CH3)]? went towards dissociation of the O(H)(C6H4)CH3 ligand, whereas [CuI(S(H)CH3)2(O(H)(C6H4)CH3)]+ converged nicely, maintaining the hydroxy function linked to the metal. The trends of total electronic energies seemed to be significant, suggesting that linear CuIS2 coordination is more suitable than CuIS, CuIS3 and CuIS4 arrangements. The formation energies of [CuI(S(H)CH3/SCH3)(OOCH)]0/?1 were higher than those of [CuI(S(H)CH3/SCH3)2]+/? on starting from [CuI(S(H)CH3/CuI(SCH3)]+/0 by ca. 11–9 kcal mol?1 (BS2W). The structural arrangements, bond distances, and angles as well as computed spectroscopic parameters resulted in good agreement with experimental data for corresponding synthetic complexes and with metal site regions of several copper(I)-proteins. These data help in interpreting structural data of complex biological systems and in constructing reliable force fields for molecular mechanics computations.  相似文献   

7.
An accurate van der Waals force field (VDW FF) was derived from highly precise quantum mechanical (QM) calculations. Small molecular clusters were used to explore van der Waals interactions between gas molecules and porous materials. The parameters of the accurate van der Waals force field were determined by QM calculations. To validate the force field, the prediction results from the VDW FF were compared with standard FFs, such as UFF, Dreiding, Pcff, and Compass. The results from the VDW FF were in excellent agreement with the experimental measurements. This force field can be applied to the prediction of the gas density (H2, CO2, C2H4, CH4, N2, O2) and adsorption performance inside porous materials, such as covalent organic frameworks (COFs), zeolites and metal organic frameworks (MOFs), consisting of H, B, N, C, O, S, Si, Al, Zn, Mg, Ni, and Co. This work provides a solid basis for studying gas adsorption in porous materials. © 2017 Wiley Periodicals, Inc.  相似文献   

8.
The addition of oxygen‐centered radicals to fullerenes has been intensively studied due to their role in cell protection against against hydrogen peroxide induced oxidative damage. However, the analogous reaction of sulfur‐centered radicals has been largely overlooked. Herein, we investigate the addition of S‐centered radicals to C50, C60, C70, and C100 fullerenes by means of DFT calculations. The radicals assayed were: S, SH, SCH3, SCH2CH3, SC6H5, SCH2C6H5, and the open‐disulfide SCH2CH2CH2CH2S. Sulfur, the most reactive species, prefers to be attached to a 66‐bond of C60 with a binding energy (Ebind) of 2.4 eV. For the SR radicals the electronic binding energies to C60 are 0.77, 0.74, 0.58, 0.67, and 0.35 eV for SH, SCH3, SCH2CH3, SCH2C6H5, and SC6H5, respectively. The reactivity of C60 toward SR radicals can be increased by lithium doping. For Li@C60, the Ebind is increased by 0.65 eV with respect to C60, but only by 0.33 eV for the exohedral doping. Fullerenes act like free radical sponges. Indeed, the C60‐SR Ebind can be duplicated if two radicals are added in ortho or para positions. The enhanced reactivity because of multiple additions is mostly a local effect, although the addition of one radical makes the whole cage more reactive. Therefore, as observed for hydroxylated fullerenes, they should protect cells from oxidative damage. However, the thiolated fullerenes have one advantage, they can be easily attached to gold nanoparticles. For the addition on pentagon junctions smaller fullerenes like C50 are more reactive than C60. Interestingly, C70 is as reactive as C60, even for the addition on the equatorial belt. For larger fullerenes like C100, reactivity decreases for the carbon atoms belonging to hexagon junctions. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2010  相似文献   

9.
A series of macrocyclic Ni/Fe/S cluster complexes were synthesized and structurally characterized. The macrocyclic type of (diphosphine)Ni‐bridged double butterfly Fe/S complexes [μ‐SCH2CH2OCH2CH2S‐μ][(μ‐S=CS)Fe2(CO)6]2‐[Ni(diphosphine)] ( 1 – 3 ; diphosphine = dppe, dppv, dppb) were prepared by treatment of the dianion [{μ‐SCH2CH2OCH2CH2S‐μ}{(μ‐CO)Fe2(CO)6}2]2–, generated in situ from Fe3(CO)12, Et3N, and HSCH2CH2OCH2CH2SH with excess CS2 followed by treatment of the resulting dianion [{μ‐SCH2CH2OCH2CH2S‐μ}{(μ‐SC=S)Fe2(CO)6}2]2– with (diphosphine)NiCl2. The three complexes 1 – 3 were characterized by elemental analysis and IR, 1H NMR, and 31P NMR spectroscopy. In addition, the molecular structures of 2 and 3 were established by X‐ray crystallography.  相似文献   

10.
The combination of various dithiols and AsX3 (X = F, Cl) produces the series of cyclized halo-arsenic dithiolate compounds: 2-chloro-1,3,2-dithiarsolane [AsCl(SCH2CH2S)] (1), 2-iodo-1,3,2-dithiarsolane [AsI(SCH2CH2S)] (2), 2-chloro-1,3,2-dithiarsenane [AsCl(SCH2CH2CH2S)] (3), 2-iodo-1,3,2-dithiarsenane [AsI(SCH2CH2CH2S)] (4), 3-chloro-4H,7H-5,6-benz-1,3,2-dithiarsepine [AsCl(SCH2)2(C6H4)] (5), 1,2-bis-dithiarsolan-2-ylmercapto-ethane [As2(SCH2CH2S)2(SCH2CH2S)] (6) and tris-(pentafluorophenylthio)-arsen [As(SC6F5)3] (7). The geometry around As for these compounds is best described as trigonal pyramidal with varying degrees of distortion. Compound 1 crystallizes in two polymorphic forms with similar structural parameters. The compounds have been characterized by IR, 1H, 19F, and 13C NMR, X-ray crystallography and GC-MS.  相似文献   

11.
The dithiocarbene complex W(CO)5[C(SCH3)2 reacts with tertiary phosphines, PPh2CH3, PPh(CH3)2, P(C2H5)3 and P(OCH3)3 to form the phosphorane complexes W(CO)5[CH3S)2C-PR3] and with HPPh2 to form the phosphine complex W(CO)5[PPh2[CH(SCH3)2]. Kinetic studies of both types of reactions show that their rates are first order each in W(CO)5[C(SCH3)2] and in the phosphorus ligand. A mechanism involving rate determining phosphorus attack at the carbene carbon followed by rapid rearrangement to the product is consistent with this rate law. Rate constants for the reactions increase with increasing nucleophilicities of the phosphines: P(OCH3)3 < PPh2H < PPh2CH3 ? PPh(CH3)2 < P(C2H5)3. The ΔH values decrease (P(OCH3)3 > PPh2H > PPh2(CH3) > PPh(CH3)2 > P(C2H5)3) as the nucleophilicities of the phosphines increase. The ΔS values (≈-30 e.u.) remain essentially constant for all the reactions. The cyclic dithiorcarbenes W(CO)5[CS(CH2)nS], wheren- 3 or 4, react with PPh2(CH3) to form the cyclic phosphorane complexes, W(CO)5[S(CH2)nSC-PPh2(CH3)]. The 6- and 7- membered cyclic dithiocarbenes also react with PPh2H to form the phosphine complexes, W(CO)5 {PPh2- [CS(CH2)nS(H)]}.  相似文献   

12.
Ab initio band-structure calculations within a density functional formalism were performed to compute the binding energy curves of atomic hydrogen with the high-symmetry adsorption sites of the (111) surface of copper. For a two-layer slab of Cu atoms and H coverage equal to 0.25, the binding energies are 2.25, 3.12, and 3.24 eV, for on-top, bridge, and threefold sites, so that the chemisorption of H2 on Cu(111) is exothermic for threefold and bridge sites, but endothermic for on-top sites. Starting from these results, an LEPS potential for the interaction of H2 with the Cu(111) surface was built. In this model potential, the most favored approaches correspond to a H2 molecule parallel to the Cu surface, and for them, the activation barrier is located at the corner between the entrance and the exit channels of the reaction, and its lowest value is 0.6 eV. The LEPS potential was used in quasi-classical trajectories calculations to simulate the adsorption of a beam of H2 molecules on Cu(111). The results show that (a) when H2 is in the ground vibrational state the dissociative adsorption probability Pa increases from 0 to .90 along a roughly sigmoidal curve by increasing the collision kinetic energy from 0.4 to 1.3 eV, and (b) the vibrational energy can be as effective as the translational one in promoting dissociative chemisorption, in agreement with the experimental results. © 1994 John Wiley & Sons, Inc.  相似文献   

13.
N‐Methylacetamide, a model of the peptide unit in proteins, is allowed to interact with CH3SH, CH3SCH3, and CH3SSCH3 as models of S‐containing amino acid residues. All of the minima are located on the ab initio potential energy surface of each heterodimer. Analysis of the forces holding each complex together identifies a variety of different attractive forces, including SH???O, NH???S, CH???O, CH???S, SH???π, and CH???π H‐bonds. Other contributing noncovalent bonds involve charge transfer into σ* and π* antibonds. Whereas some of the H‐bonds are strong enough that they represent the sole attractive force in several dimers, albeit not usually in the global minimum, charge‐transfer‐type noncovalent bonds play only a supporting role. The majority of dimers are bound by a collection of several of these attractive interactions. The SH???O and NH???S H‐bonds are of comparable strength, followed by CH???O and CH???S.  相似文献   

14.
The photoionization and dissociative ionization of molecular aggregates using synchrotron radiation is reported. The main objective of the review is to consider the intracluster relaxation processes after ionization. For hydrogen-bonded systems proton transfer is dominant. For small clusters (n<4) appearance potentials, ionization potentials, absolute proton affinities, proton solvation energies and intermolecular bond energies in the ionic clusters are deduced. For van der Waals aggregates proton transfer can also be used to characterize the intermolecular bond in the ionic cluster. Aggregates of CH4, SiH4, CH3F show proton transfer in contrast to simple aromatic compounds, which reveal no proton transfer. From the fragmentation pattern and appearance potentials relaxation by intracluster ion molecule reactions is discussed. In heterogeneous clusters intracluster Penning ionization is observed. The shift of the charge transfer resonances depends on the π-electron density in the aromatic system. The width and spectral position of these resonances are influenced by the cluster size.  相似文献   

15.
采用量子化学的密度泛甬理论方法,探讨了H2S、HS和S在立方ZrO2(110)面上不同吸附位的吸附情况.构型优化的结果表明:在bridge位H2S以垂直底物平面H原子向上、垂直底物平面H原子向下、平行底物平面和hollow位H2S平行底物平面模式吸附在ZrO2(110)面发生解离吸附.SH和S的最佳吸附位分别为桥位和顶位.Mulliken布局和态密度分析显示S原子的p轨道与Zr原子的d轨道发生相互作用.通过计算解离反应的能垒,表明H2S分子在立方ZrO2(110)面发生两步解离.  相似文献   

16.
Herein, chemical adsorption properties of the thiol‐functionalized metallocene molecules [M(C5H4SH)2] on Si(111)‐Ag√3×√3 surface were investigated using density functional theory calculation. For this purpose, thiol‐modified ferrocene [Fe(C5H4SH)2], osmocene [Os(C5H4SH)2], and ruthenocene [Ru(C5H4SH)2] molecules were attached on the surface via two different binding models. The more favorable chemical binding energies of [Fe(C5H4SH)2], [Os(C5H4SH)2], and [Ru(C5H4SH)2] molecules were calculated as ?3.42, ?2.15, and ?2.00 eV, respectively. The results showed that the adsorption energies of metallocene molecules change independently by increasing the radius of metal ions where on going down the group of the periodic table. The calculated adsorption energies showed that [Fe(C5H4SH)2] molecule was more stable on the Si(111)‐Ag√3×√3 surface. By calculating the electronic band structure for metallocene/Si(111)‐Ag√3×√3 surfaces, we identified a flat dispersion band in a part of the surface Brillouin zone. © 2015 Wiley Periodicals, Inc.  相似文献   

17.
We calculate the heats of vaporisation for imidazolium‐based ionic liquids [Cnmim][NTf2] with n=1, 2, 4, 6, 8 by means of molecular dynamics (MD) simulations and discuss their behavior with respect to temperature and the alkyl chain length. We use a force field developed recently. The different cohesive energies contributing to the overall heats of vaporisations are discussed in detail. With increasing alkyl chain length, the Coulomb contribution to the heat of vaporisation remains constant at around 80 kJ mol?1, whereas the van der Waals interaction increases continuously. The calculated increase of about 4.7 kJ mol?1 per CH2‐group of the van der Waals contribution in the ionic liquid exactly coincides with the increase in the heats of vaporisation for n‐alcohols and n‐alkanes, respectively. The results support the importance of van der Waals interactions even in systems completely composed of ions.  相似文献   

18.
A 480 L evacuable reaction chamber, equipped with FT-IR spectroscopy on-line and ion chromatography off-line, has been used to study the gas phase reaction between the nitrate radical, NO3, and the reduced organic sulphur compounds CH3CH2SH, (CH3CH2)2S, (CH3CH2)2S2, and CH3CH2SCH3 in air. The products CH3CH2SO3H, SO2, H2SO4, CH3CHO, and CH3CH2ONO2 were identified and quantified in the reactions of the first three compounds, CH3CH2SH, (CH3CH2)2S, and (CH3CH2)2S2. The reaction products were CH3CH2SO3H, CH3SO3H, SO2, H2SO4, CH3CHO, and CH2O in the reaction of CH3CH2SCH3. On the basis of identified reaction products and intermediates observed in the infrared spectra, mechanisms are proposed for the reactions between the NO3 radical and the four reduced organic sulphur compounds. The results of this study, together with those from previous experiments performed in this laboratory on CH3SCH3, CH3SH, and CH3SSCH3 lead to the conclusion that all these species, in the reaction with the NO3 radical, follow a similar degradation mechanism producing SO2, H2SO4, R? SO3H, R? CHO, and R? CH2ONO2, as the main reaction products. The inital step of the reaction of NO3 with R? S? R and R? S? H type (R = CH3, CH2CH3) reduced organic sulphur compounds was found to be H-atom abstraction, probably after the formation of an initial adduct. For the reaction between NO3 and R? S? S? R type compounds, evidence for an addition-decomposition reaction, as the initial steps, was obtained. R? S·, R? S(O)·, and R? S(O)2· appear to be formed as intermediates in all the reactions. © John Wiley & Sons, Inc.  相似文献   

19.
The precise molecular structure of [PdCl(CH2SCH3)(PPh3)2] has been determined from three-dimensional X-ray diffraction data collected at ?160°C. The CH2Cl2 solvated crystal ([PdCl(CH2SCH3)(PPh3)2 · CH2Cl2]) belongs to the monoclinic system, space group P21/n, with four formula units in a cell of dimensions: a 14.973(3), b 15.333(3), c 17.377(3) Å and β 115.77(1)° at ?160°C. The structure was solved by the conventional heavy atom method and refined by the least-squares procedure to R = 0.035 for observed reflections. The geometry around the palladium atom is square-planar. The phosphorus atoms of the two triphenylphosphine ligands are mutually trans. The CH2SCH3 group is bonded to the palladium atom only through the PdC σ-bond and the sulfur atom is not bonded to the metal atom (PdC(1) 2.061(3), SC(1) 1.796(3), SC(2) 1.817(5), Pd?S 2.973(1) Å, PdC(1)S 100.64(14)° and C(1)SC(2) 101.28(18)°). The structure is in contrast to that of [PdCl(CH2SCH3)(PPh3)], in which both the carbon and sulfur atoms of the CH2SCH3 group are bonded to the palladium atom.  相似文献   

20.
s-四嗪-水簇复合物的理论研究   总被引:7,自引:0,他引:7  
黄方千  李权  赵可清 《化学学报》2006,64(16):1642-1648
用量子化学B3LYP方法和6-31++G**基函数研究了s-四嗪-水簇复合物基态分子间相互作用, 并进行了构型优化和频率计算, 分别得到无虚频稳定的s-四嗪-(水)2复合物、s-四嗪-(水)3复合物和s-四嗪-(水)4复合物6个、9个和12个. 复合物存在较强的氢键作用, 复合物结构中形成一个N…H—O氢键并终止于O…H—C氢键的氢键水链构型最稳定. 经基组重叠误差和零点振动能校正后, 最稳定的1∶2, 1∶3和1∶4(摩尔比)复合物的结合能分别是41.35, 70.9和 94.61 kJ/mol. 振动分析显示氢键的形成使复合物中水分子H—O键对称伸缩振动频率减小(红移). 研究表明N…H键越短, N…H—O键角越接近直线, 稳定化能越大, 氢键作用越强. 同时, 用含时密度泛函理论方法在TD-B3LYP/6-31++G**水平计算了s-四嗪单体及其氢键复合物的第一1(n, p*)激发态的垂直激发能.  相似文献   

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