ON THE MULTIPLE CYCLES OF BACTERIORHODOPSIN AT HIGH pH

Bacteriorhodopsin (bR) shows at least two parallel photocycles at pH 10.5, suggesting that more than one form of bR exists in alkaline bR sample. Upon the absorption of visible light, the different forms of bR at high pH yield different parallel intermediates: M₄₁₂ with two rise and two decay components; and R, an extremely fast rising and extremely slow decaying intermediate with an absorption peak at 350 nm. The kinetics and spectra do not agree with the proposal of Kouyama el al. (1988, Biochemistry 27,5855–5863) that the 350 nm-absorbing species is the N intermediate which follows M₄₁₂ and that the slow decaying M₄₁₂ is an M-like photoproduct of N. Our results basically agree with the proposal of Dacshazy et al. (1988, Proc. Natl. Acad. Sci. USA 85,6358–6361) that the fast and slow decaying M₄₁₂ intermediates and R are in independent photocycles arising from different forms of bR. The different forms of bR are probably in dynamic equilibrium with their ratios controlled by pH and ionic strength.     

Molecular beam study of methyl nitrite photodissociation after excitation into the second absorption band at 248 and 193 nm

The photodissociation dynamics of methyl nitrite in the second UV absorption band (B band) has been studied by molecular beam photofragment spectroscopy at 248 and 193 nm. Angular distributions were measured at both wavelengths yielding anisotropy parameters β=1.36±0.10 at 248 nm and β=1.08±0.07 at 193 nm which indicates a predominantly in plane transition. Measurements performed atT _rot<10 K and atT _rot≧70 K show that within the experimental error β is independent of the rotational temperature of the molecular beam implying that the dissociation process is considerably faster than a typical rotational period. The anglex between the electronic transition moment and the dissociation direction is estimated to be 28° at 248 nm and 34° at 193 nm. The difference ofx at these two wavelengths is proposed to be the effect of an admixture of a perpendicular transition at 193 nm. No contribution attributable to the electronically excited methoxy fragment was found in the TOF spectrum after excitation at 193 nm. It is concluded that the production quantum yield for electronically excited methoxy is smaller than 7%.     

THE PHOTOPHYSICS OF BONELLIN: A CHLORIN FOUND IN MARINE ANIMALS

The photophysical properties of bonellin, a free-base chlorin, were studied in ethanolic solution. For the singlet excited state the following data were determined: an energy level, E^B_S= 187 ± 2kJ mol^-1, a lifetime, τ_f= 6.3± 0.1ns at 298 K, and fluorescence quantum yields, φ_r= 0.07 ± 0.02 (298 K) and 0.20 ± 0.04 (77 K). The S₁→ T intersystem crossing quantum yield was φ_isc= 0.85 ± 0.1. No phosphorescence was observed at 298 K and 77 K. Based on quenching experiments the triplet state energy level was determined to be E^B_T= 180 ± 20 kJ mol^-1. A unimolecular decay rate constant, k₁= (2.3 ± 0.5)· 10³ s^-1 at room temperature, and a molar absorption coefficient, ε^T₄₄₃= 9500 ± 500 M^-1 cm^-1, were obtained for the triplet state. This species was quenched by O₂ with ko₂= (1.7 ±0.3)· 10⁸M^-1 s^-1, and by benzoquinone with k_q= (5.2 ± 0.3)-10⁹M^-1 s^-1. The latter value, as well as the high value determined for the triplet annihilation rate constant, k₂= (2 ± 0.5)· 10⁹M^-1 s^-1, might reflect an electron transfer mechanism. Copper bonellin had a shorter triplet lifetime (>20 ns), which offers a possible explanation for its lack of photodynamic action.     

KINETIC ANALYSIS OF TIME-RESOLVED INFRARED DIFFERENCE SPECTRA OF THE L and M INTERMEDIATES OF BACTERIORHODOPSIN*

Abstract– Infrared difference spectra with 4 cm^?1 spectral resolution and 10-u.s temporal resolution, obtained previously with a stroboscopic Fourier-transform difference technique (Braiman et al., 1991, Proc. Natl. Acad. Sci. USA 88, 2388), were analyzed by means of a global exponential fitting procedure based on singular value decomposition. Using a simple linear kinetic model K → L → M for the bacteriorhodopsin (bR) photocycle in the time range10–1000 μ.s at 16.5°C, it was possible to generate bR → L and bR → M difference spectra with signal/noise ratios comparable to those obtainable with low temperature difference spectroscopy. The resulting time-resolved bR → L and bR-→ M difference spectra are both very similar to the corresponding static FTIR difference spectra obtained at 175 K and 250 K, respectively. In the bR → L spectrum, however, there are interesting differences that may indicate a greater degree of deprotonation of Asp-96 when L is formed at physiological temperatures than when it is observed in a low-temperature steady state.     

Bistable Retinal Schiff Base Photodynamics of Histidine Kinase Rhodopsin HKR1 from Chlamydomonas reinhardtii

The photodynamics of the recombinant rhodopsin fragment of the histidine kinase rhodopsin HKR1 from Chlamydomonas reinhardtii was studied by absorption and fluorescence spectroscopy. The retinal cofactor of HKR1 exists in two Schiff base forms RetA and RetB. RetA is the deprotonated 13‐cis‐retinal Schiff base (RSB) absorbing in the UVA spectral region. RetB is the protonated all‐trans RSB absorbing in the blue spectral region. Blue light exposure converts RetB fully to RetA. UVA light exposure converts RetA to RetB and RetB to RetA giving a mixture determined by their absorption cross sections and their conversion efficiencies. The quantum efficiencies of conversion of RetA to RetB and RetB to RetA were determined to be 0.096 ± 0.005 and 0.405 ± 0.01 respectively. In the dark thermal equilibration between RetA and RetB with dominant RetA content occurred with a time constant of about 3 days at room temperature. The fluorescence emission behavior of RetA and RetB was studied, and fluorescence quantum yields of ?_F(RetA) = 0.00117 and ?_F(RetB) = 9.4 × 10^?5 were determined. Reaction coordinate schemes of the photodynamics are developed.     

Kinetic and thermochemical parameters of chlorine atom transfer reactions from CF3Cl,CF3CF2Cl,CF2ClCF2Cl,and CF2ClCFCl2 in gas phase

The following reactions: (1) were studied over the temperature ranges 533–687 K, 563–663 K, and 503–613 K for the forward reactions respectively and over 683–763 K, for the back reaction. Arrhenius parameters for chlorine atom transfer were determined relative to the combination of the attacking radicals. The ΔH_r°(1) = ?3.95 ± 0.45 kcal mol^?1 was calculated and from this value the ΔH∮(C₂F₅Cl) = ?2.66.3 ± 2.5 kcal mol^?1 and D(C₂F₅-Cl) = 82.0 ± 1.2 kcal mol^?1 were obtained. Besides, the ΔH_r°(2) was estimated leading to D(CF₂ClCF₂Cl) = 79.2 ± 5 Kcal mol^?1. The bond dissociation energies and the heat of formation are compared with those of the literature. The effect of the halogen substitutents as well as the importance of the polar effects for halogen transfer processes are discussed.     

THE EFFECT OF VISCOSITY ON THE PHOTOCYCLE OF BACTERIORHODOPSIN

Abstract— We study the effect of solvent viscosity on the kinetics of the photocycle of bacteriorhodopsin (bR) from Halobacterium halobium. Solvent viscosity is altered by changing the glycerol concentration from 20 to 80% glycerol by volume. The kinetics of the photocycle are observed after flash photolysis at four wavelengths at several temperatures between 240 and 315 K. Assuming a sequential model, bR → K -→ L → M → O → bR, Arrhenius plots of the rate coefficients determine the activation enthalpies and frequency factors for each step. Kinetic data from all solvents are considered together and studied as a function of temperature for fixed solvent viscosities. The early steps of the cycle are insensitive to solvent viscosity, →; the later steps are retarded with increasing viscosity. Activation enthalpies are independent of viscosity; the frequency factors are proportional to η^−K, where the exponent k 0.25 for the transition K → L, 0.0 for L → M, 0.8 for M → O and 0.5 for O → bR.     

ISOMER COMPOSITION and SPECTRA OF THE DARK and LIGHT ADAPTED FORMS OF ARTIFICIAL BACTERIORHODOPSINS*

Abstract– The isomer composition and spectral properties of 15 artificial bacteriorhodopsin (bR) pigments, based on a series of retinal analogs with polyene residue modified below C₉ are determined for both dark-adapted (DA) and light-adapted (LA) forms. Similarly to native bR, in all cases only two isomers, C₁₃=C₁₄cis (13-cis) and M-trans, are observed. However, the artificial DA pigments have a lower 13-d.s content than native DA bR (? 66%) while the corresponding LA pigments have a much higher 13-cis content (11-69%) than native LA bR (<2%). Thus, in variance with the native pigment, in all of the artificial systems light also induced the reversed all-trans13-cis process. The data are accounted for in terms of specific steric interactions between the polyene and the protein binding site which allow a (C₁₅-anti)(C_ls-syn) isomerization during the photocycle of the artificial pigments, but not in the case of native bR. This accounts for the high proton pumping efficiency of the natural pigment. The nature of a highly red shifted light-adapted form of two of the artificial pigments is investigated and discussed. It is also shown that, in variance with native bR, several artificial pigments exhibit identical absorption spectra for their 13-cis and all-trans isomers. It is concluded that the spectral data for the above species of artificial pigments do not lead to a clear molecular model for the origin of the spectral shift between 13-cis and all-trans bR.     

ACTION SPECTRA OF PHYTOCHROME IN VIVO*

Abstract— A method is described to determine spectral properties of phytochrome in vivo. For photochrome in 7-day-old dark-grown Cucurbita pepo L. seedlings the mole fraction of the far-red-absorbing form (P_fr) present at photoequilibrium at 664 nm was found to be 0.76 ± 0.02 in vivo. Based on reflectance measurements, the photon fluence rate just below the surface of the cotyledons was calculated. Local rates of photoconversion for known local fluence rates were measured across cotyledons after non-saturating irradiations with wavelengths between 544 and 781 nm and in situ molar photoconversion coefficients were obtained. In contrast to purified oat phytochrome, the in situ molar photoconversion coefficients for P_fr show a strong shoulder between 660 and 700 nm. The maximum of P_fr absorption is at 726 nm. An isosbestic point of phytochrome is found at 686 nm. The mole fraction of P_fr present at photoequilibrium with 686 nm light is 0.58. The ratio of photoconversion quantum yields (that for P_r→ P_fr divided by that for P_fr→ P_r) is 1.38 ± 0.06.     

The photoisomerization of retinal

Abstract— –Quantum efficiencies have been measured for the photoisomerization of four stereoisomers of retinal (all-trans, 13-cis, 11 cis, and 9-cis) in two solvents at different wavelengths of irradiation and at various temperatures. In heane at 25°C the quantum efficiencies for isomerization at 365 nm are: 9-cis to trans, 0.5; 13-cis to trans, 0.4; 11-cis to trans, 0.2; all-trans to monocis isomers, 0.2-0.06, depending upon assumptions made regarding the stereo-isomeric composition of the product. These values vary somewhat with the wavelength of the irradiating light. The quantum efficiency for the photoisomerization of all-trans retinal in hexane decreases by a factor of 30 when the temperature is lowered from 25° to – 65°C; the activation energy for this photoisomerization is about 5 kcal/mole. The quantum efficiencies for the isomerization of the monocis isomers to all-trans retinal in hexane are virtually independent of temperature. In ethanol the rates of photoisomerization from trans to cis or cis to trans depend only slightly on the temperature between 25° and – 65°C. The photosensitivities of the stereoisomers of retinal are of the same order of magnitude as those of the retinylidene chromophores of rhodopsin (11 -cis), metarhodopsin I (all-trans), and isorhodopsin (9-cis); but it is not yet possible to derive the photochemistry of rhodopsin uniquely and quantitatively from that of retinal.     

Spectrophotometric investigation of the mechanism of polymerization of isobutylene with vanadium tetrachloride and visible light

The spectra of n-heptane solution of VCl₄, isobutylene, and their mixture at temperatures ranging from +25 to ?80°C in the range of wavelengths from 200 to 2000 nm were investigated. In the region of wavelengths of visible light (400–700 nm) in which the absorption of isobutylene alone and of VCl₄ (concentration lower than 2.2 × 10^?4 mole/l.) is practically zero, their mixtures exhibit an absorption which depends on the concentration of both components and on temperature. A colored complex of VCl₄ and isobutylene is thus obtained, the concentration of which increases with decreasing temperature and is in equilibrium with that of the starting components. The polymerization of isobutylene under the experimental conditions investigated here probably is initiated with the isobutylene–VCl₄ complex after its excitation with light or heat. At low temperatures (t < ?20°C), when the polymerization of isobutylene with VCl₄ virtually does not take place at all in the dark, only excitation with light is operative in the initiation, while at higher temperatures (t > +10°C) thermal excitation plays the predominant role.     

Photodegradation of cellulose acetate fibers

The photodegradation of cellulose acetate fibers by ultraviolet light in vacuo at 77°K and at ambient temperature was studied. Three kinds of light sources with different wavelengths between 2353 and 6000 Å were employed. ESR studies at 77°K show that several kinds of free radicals are produced from cellulose diacetate (CDA) and cellulose triacetate (CTA) fibers when irradiated with light of wavelength shorter than 2800 Å. Among these methyl radicals formed decayed within 210 min at 77°K. When the temperature was raised above 77°K, radical transformation occurred at 87°K and most of the free radicals decayed at 193°K, whereas the cellulosic radicals were stable at this and even at higher temperatures. Ultraviolet spectroscopy studies revealed that the main chromophores are the carbonyl function of the acetyl group and acetal groups in the polymer. The photodegradation of the polymers at ambient temperature resulted in the formation of gaseous products (mainly CO, CO₂, and CH₄), together with the loss of bound acetic acid content and sample weight. Decreases in viscosity and reduction of tensile strength and elongation were also observed in the irradiated samples, revealing that the overt effects of ultraviolet light on cellulose acetate fibers are interpreted in terms of free-radical reactions ultimately leading to main-chain and side-group scissions, unsaturation, and the formation of small molecule fragments. Among these, main-chain scission took place predominantly in CDA fiber and side-group scission in CTA fiber. The mechanism of the fundamental photochemical degradation processes of cellulose acetate fibers is elucidated.     

Ozone–olefin reactions in the gas phase 1. Rate constants and activation energies

Reactions of ozone with simple olefins have been studied between 6 and 800 mtorr total pressure in a 220-m³ reactor. Rate constants for the removal of ozone by an excess of olefin in the presence of 150 mtorr oxygen were determined over the temperature range 280 to 360° K by continuous optical absorption measurements at 2537 Å. The technique was tested by measuring the rate constants k₁ and k₂ of the reactions (1) NO + O₃ → NO₂ + O₂ and (2) NO₂ + O₃ rarr; NO₃ + O₂ which are known from the literature. The results for NO, NO₂, C₂H₄, C₃H₆, 2-butene (mixture of the isomers), 1,3→butadiene, isobutene, and 1,1 -difluoro-ethylene are 1.7 × 10^{?1 4} (290°K), 3.24 × 10^?17 (289°K), 1.2 × 10^{?1 4} exp (–4.95 ± 0.20/RT), 1.1 × 10^{?1 4} exp (–3.91 ± 0.20/RT), 0.94 × 10^{?1 4} exp ( –2.28 ± 0.15/RT), 5.45 ± 10^{?1 4} exp ( –5.33 ± 0.20/RT), 1.8 ×10^?17 (283°K), and 8 × 10^?20 cm³/molecule ·s(290°K). Productformation from the ozone–propylene reaction was studied by a mass spectrometric technique. The stoichiometry of the reaction is near unity in the presence of molecular oxygen.     

INTERMEDIATES IN THE PHOTOCONVERSION OF FUNCTIONAL PHYTOCHROME IN FERN SPORES OF Dryopteris-I DEMONSTRATION AND QUANTITATIVE CHARACTERIZATION OF THE PHOTOCHROMIC SYSTEM Pr⇔ Ii700USING NANOSECOND-LASER PULSES*,†

Abstract— Spores of Dryopteris paleacea and D. filix-mas are positively photoblastic with an optimum in the action spectrum around 665 nm. Light is perceived by phytochrome and the relationship between germination and mole fraction of the far-red-absorbing form of this pigment, P_fr, was investigated with saturating irradiations between 662 and 747 nm under low-fluence-rate conditions. These control irradiations establish a proportion of the total phytochrome, P,_tot, as P_fr with P_fr/P_tot–φ at equilibrium. These φ -values were calculated according to data for native oat phytochrome (Kelly and Lagarias, 1985, Biochemistry 24, 6003) and the spectral characteristics of the interference filters. With this method a linear relationship could be found between φ and germination from 2 to 70% for D. paleacea and from 2 to 90% for D. filix-mas, if probit germination was plotted vs probit φ This correlation formed the basis of investigating the phytochrome photoconversion by dye-laser pulses of 380 ± 30 ns under high-fluence-rate conditions, and thus to test quantitatively the impact of the photoreversibility of intermediate reactions of the photoconversion and the red-absorbing form of phytochrome, P_fr on the final P_fr-level. Spore germination was initiated by a single-laser pulse in the range from 592 to 700 nm. The most effective wavelengths were 649 and 660 nm in both species, and at saturation maximal germination (ca. 50%) was obtained from 592 to 665 nm for D. paleacea or ca. 60% germination from 592 to 670 nm for D. filix-mas. Both saturation levels correspond to a ø-value between 0.40 and 0.45. This significantly diminished photoconversion is a consequence of the high-fluence-rate conditions during the laser pulse which establishes the photochromic system between P_r and a set of very early intermediates, Iⁱ_700, (= P_r? Iⁱ₇₀₀). This system can be described by the extinction coefficients of P_r and the intermediates Iⁱ₇₀₀, and by the quantum yields, 4,φ for the forward and reverse reactions as φ If φ is calculated, assuming a quantum yield of 1:1 for both reactions and with the extinction coefficients of P_r and Iⁱ_7(l() (= lumi-R) given by Eilfeld and Riidiger (1985, Z. Naturforsch. 40c , 109), significantly higher values are calculated for / as compared to φ found in the control experiments. These results can be explained either: (i) with a quantum yield ratio φ_pr-φ1700: φ_1700φpr=1:1 and an assumed additional dark reaction leading from Iⁱ₇₀₀ or later intermediates back to P_r: or (ii) with a quantum yield ratio φ_{pr φ 1700}: φ_{1700 φpr}=1:2. In this case all Iⁱ₇₀₀ have to relax to P_fr. In this case all Iⁱ₇₀₀ have to relax to P_fr.     

Triplet quantum yield determination by photosensitized oxygenation in the presence of heavy atom additives: Eosin in methanol

Relative rates of heavy-atom-enhanced photosensitized ¹O₂-reactions and relative quantum efficiencies of heavy-atom-quenched fluorescence yield φ^o_T = 0.66 ± 0.03 for a 5·10^?5 M methanolic solution of Eosin.     

Wavelength dependence of the quantum efficiencies of the primary processes in formaldehyde photolysis at 25°C

The quantum efficiencies of the primary processes in formaldehyde photolysis (?₁ and ?₂) were determined as a function of wavelength in the range from 2890 to 3380 Å and at 25°C: CH₂O + hν → H + HCO (1); CH₂O + hν → H₂ + CO (2). The estimates of ?₂ were derived from Φ_H2 values obtained in photolyses of CH₂O-isobutene mixtures at high isobutene concentrations where H-atom scavenging was essentially complete. Values of ?₁ + ?₂, obtained from the Φ_H2 values from the pure CH₂O photolyses, were very near unity at all but the longest wavelengths employed: Φ_H2 = ?₁ + ?₂ = 1.02 (2930 Å); 1.12 (3130 Å); 1.06 (3150 Å); 1.01 (3250 Å); 1.0 (3335 Å); 0.75 (3380 Å). Our results showed that the onset of photodissociation of CH₂O by process (1) was at 3370 ± 10 Å; this corresponds to D(H-CHO) = 84.8 plusmn; 0.3 kcal/mol. The values of ?₁ increased regularly with decreasing wavelength from 0 at 3370 Å to ～0.7 at 3175 Å. Little further variation in ?₁ occurred from 3175 to 2890 Å. For experiments at λ = 3300 Å, the addition of CO₂ (～300 torr) reduced ?₂, while the effect on ?₁ appeared to be small. The present results coupled with the solar irradiance estimates of Peterson [24] and the extinction data for CH₂O from McQuigg and Calvert [7] were used to make new estimates of the apparent first-order rate constants (min^?;1 × 10³) of process (1) in the lower atmosphere at various solar zenith angles (in parentheses): 2.31 (0°); 2.17 (20°); 1.71 (40°); 0.92 (60°); and 0.17 (78°). The corresponding first-order rate constants (min^?1 × 10³) for solar light absorption by CH₂O in the lower atmosphere are 7.74 (0°); 7.38 (20°); 6.18 (40°); 3.80 (60°); and 0.96 (78°).     

Morphological Stable Spirobifluorene/Oxadiazole Hybrids as Bipolar Host Materials for Efficient Green and Red Electrophosphorescence

A series of 9,9′‐spirobifluorene/oxadiazole hybrids with various linkages between two components, namely SBF‐p‐OXD ( 1 ), SBF‐m‐OXD ( 2 ), and SBF‐o‐OXD ( 3 ) are designed and synthesized through Suzuki cross‐coupling reactions. The incorporation of a rigid and bulky spirobifluorene moiety greatly improves their thermal and morphological stability, with T_d (decomposition temperature) and T_g (glass transition temperature) in the ranges of 401–480 °C and 136–210 °C, respectively. 2 and 3 with meta‐ and ortho‐linkage display higher triplet energy and blue‐shifted absorption and emission than their para‐linked analogue 1 owing to the decreasing π‐conjugation between the two components. Their HOMO and LUMO energy levels depend on the linkage modes within the range of 5.57–5.64 eV and 2.33–2.49 eV, respectively. Multilayer deep red electrophosphorescent devices with 1 , 2 , 3 as hosts were fabricated and their EL efficiencies follow the order of 3 (o)> 2 (m)> 1 (p), which correlates with their triplet energy and the separation of HOMO and LUMO distributions at molecular orbitals. The maximum external quantum efficiencies of 11.7 % for green and 9.8 % for deep red phosphorescent organic light‐emitting diodes (OLEDs) are achieved by using 2 and 3 as host materials, respectively.     

The NO- and NO2-catalyzed decomposition of I2 in shock waves

Measurements of the NO-catalyzed dissociation of I₂ in Ar in incident shock waves were carried out in the temperature range of 700°-1520°K and at total concentrations of 5 × 10^?6-6 × 10^?5 mol/cm³, using ultraviolet-visible absorption techniques to monitor the disappearance of I₂. It was shown that the main reaction responsible for the disappearance under these conditions is I₂ + NO → INO + I, for which a rate coefficient of (2.9 ± 0.5) × 10¹³ exp[-(18.0 ± 0.6 kcal/mol)/RT] cm²/mol·sec was determined. The INO formed dissociates rapidly in a subsequent reaction. The reaction, therefore, constitutes a “chemical model” for a “thermal collisional release mechanism.” Preliminary measurements of the rate coefficient for I₂ + NO₂ → INO₂ + I are also presented. Combined with information on the reverse reactions obtained in earlier room temperature experiments, these results lead to accurate values of ΔH°_f for INO and INO₂ equal to 29.7 ± 0.5 and 15.9 ± 1 kcal/mol, respectively.     

Rate constants and Arrhenius parameters for the reactions of Cl atoms with the halogenated ethers: CF3CH2OCHF2, CF3CHClOCHF2, and CF3CH2OCClF2

Rate constants have been determined for the reactions of Cl atoms with the halogenated ethers CF₃CH₂OCHF₂, CF₃CHClOCHF₂, and CF₃CH₂OCClF₂ using a relative‐rate technique. Chlorine atoms were generated by continuous photolysis of Cl₂ in a mixture containing the ether and CD₄. Changes in the concentrations of these two species were measured via changes in their infrared absorption spectra observed with a Fourier transform infrared (FTIR) spectrometer. Relative‐rate constants were converted to absolute values using the previously measured rate constants for the reaction, Cl + CD₄ → DCl + CD₃. Experiments were carried out at 295, 323, and 363 K, yielding the following Arrhenius expressions for the rate constants within this range of temperature:Cl + CF₃CH₂OCHF₂: k = (5.1₅ ± 0.7) × 10⁻¹² exp(−1830 ± 410 K/T) cm³ molecule⁻¹ s⁻¹ Cl + CF₃CHClOCHF₂: k = (1.6 ± 0.2) × 10⁻¹¹ exp(−2450 ± 250 K/T) cm³ molecule⁻¹ s⁻¹ Cl + CF₃CH₂OCClF₂: k = (9.6 ± 0.4) × 10⁻¹² exp(−2390 ± 190 K/T) cm³ molecule⁻¹ s⁻¹ The results are compared with those obtained previously for the reactions of Cl atoms with other halogenated methyl ethyl ethers. © 2001 John Wiley & Sons, Inc. Int J Chem Kinet 33: 165–172, 2001     

EXCITED-STATE PROPERTIES OF DNA METHYLATED AT THE NV7 POSITION OF GUANINE AND ITS FREE FLUOROPHORE AT ROOM TEMPERATURE

The room-temperature optical properties of calf thymus DNA, with about 75% of its guanine residues methylated at position N-7, are compared with those of 7-methyl GMP which has the same fluorophore. The fluorescence spectrum of the methylated guanine residues depends strongly on the excitation wavelength, shifting to the blue as the wavelength increases. The fluorescence quantum yield, corrected for the contribution to absorption by the other virtually nonfluorescent residues, exhibits a pronounced drop at long excitation wavelengths relative to that for excitation at 265 nm. The degree of fluorescence polarization exhibits a weak dependence on the excitation and emission wavelengths. For 7-methyl GMP, the fluorescence spectrum is very weakly dependent on the excitation wavelength and its fluorescence quantum yield shows a moderate increase at long wavelengths. The degree of fluorescence polarization increases with increasing excitation wavelength particularly when monitoring the emission in the short wavelength region of the fluorescence spectrum. A pronounced drop of unknown origin is observed when exciting at 265 nm, which is not observed for methylated DNA. The methylated DNA data are interpreted in terms of a combination of (i) a heterogeneous environment of the methylated guanine residues, which results from sequence-dependent stacking interactions, and (ii) transfer of excitation energy from the other residues to the fluorescing methylated guanine residues. From the values of the quantum yields and those of the decay times, which we have recently reported (Georghiou et al., 1985), the following values are obtained for the radiative, k_t, and the sum of the nonradiative, σk₁, rate constants for deexcitation of the excited states of methylated DNA and its free fluorophore: 1.6 × 10⁸ s^-1 7 × 10⁷ s^-1 and 5 × 10¹⁰ s^-lvs 6 × 10⁹ s^-1. Because of energy transfer from the other residues. the k_f value for the methylated guanine residues is overestimated but their σk₁, value is not affected significantly and is by about an order of magnitude larger than that for 7-methyl GMP, apparently because of stacking interactions.