Molecular and crystal structures of 2-amino-5-benzoyl-4-(2-nitrophenyl)-3-cyano-4,5-dihydrothiophene

The crystal structure of 2-amino-5-benzoyl-4-(2-nitrophenyl)-3-cyano-4,5-dihydrothiophene is determined by X-ray diffraction analysis. The unit cell parameters are as follows: a = 10.878(2) Å, b = 12.890(3) Å, c = 13.539(4) Å, α = 108.15(2)°, β = 99.26(2)°, γ = 107.13(2)°, V = 1656(2) ų, d _calcd = 1.410 g/cm³, Z = 4, and space group P1ˉ. The molecules occupy two systems of independent positions in the crystal. Similar to the compounds studied earlier in this series, the o-nitrophenyl substituent has a synperiplanar orientation relative to the hydrogen atom at the C(4) atom of the heterocycle. __________ Translated from Kristallografiya, Vol. 45, No. 2, 2000, pp. 282–285. Original Russian Text Copyright ? 2000 by Nesterov, Kuleshova, Samet, Shestopalov.     

Crystal and molecular structure of diphenyl sulphone, 4,4′-difluorodiphenyl sulphone and 3,3′-dinitro-4,4′-difluorodiphenyl sulphone

The crystal and molecular structures of diphenyl sulphone (A), 4,4′-difluorodiphenyl sulphone (B) and 3,3′-dinitro-4,4′-difluorodiphenyl sulphone (C) have been determined from three-dimensional MoKα diffractometer data. Each molecule crystallizes in the monoclinic space groupP2₁/c with cell dimensionsa = 12.225(4),b = 7.830(2),c = 11.328(2) Å, β = 98 °19′(2);a = 8.255(3),b= 13.062(3),c = 10.135(2) Å, β = 99 ° 31′(2) anda = 14.736 (4),b = 8.145(2),c= 14.626(3) Å, β= 129°8′(2), respectively. The structures were solved by Patterson and Fourier techniques and refined by the method of least squares toR-factors of 3.8% over 1798 reflections, 6.3% over 1834 reflections and 5.4% over 2185 reflections forA,B andC, respectively. The dimensions of the sulphone group are similar in each molecule; the S—C bond lengths range from 1.764(3) to 1.775(3) Å, and the S—O bond lengths from 1.432(3) to 1.439(3) Å. The dihedral angles between the aromatic rings and the S—S—C planes lie between 72,6 and 88.9 °, compared with the value of 90 ° predicted for maximum conjugation between the sulphone group and the aromatic ring. Intermolecular H―O contacts of 2.37 Å suggest possible C—H—O type hydrogen bonds joining the molecules of 4,4′-difluorodiphenyl sulphone into dimers and the molecules of 3,3′-dinitro-4,4′-difluorodiphenyl sulphone into chains.     

Synthesis and crystal structures of lithium polyphosphates, LiPO3, Li4H(PO3)5, and LiMn(PO3)3

Polyphosphates of the compositions LiPO₃, Li₄H(PO₃)₅, and LiMn(PO₃)₃ were prepared by the reactions of Li₂CO₃ and MnO₂ with melts of polyphosphoric acids at 240–350°C, and their crystal structures were established. The unit-cell parameters are a = 13.074 Å, b = 5.4068 Å, c = 16.452 Å, β = 99.00°, sp. gr. P2/n; a = 6.6434 Å, b = 7.253 Å, c = 11.399 Å, α = 72.60°, β = 83.36°, γ = 85.32°, sp. gr.; $P\bar 1$ ; a = 8.364 Å, b = 8.561 Å, c = 8.6600 Å, sp. gr. P2₁2₁2₁, respectively. The influence of cations on the structures of the compounds is discussed.     

Synthesis and Crystal Structure of a Four-coordinated Cobalt Complex with 1-Methylbenzimidazole

A four-coordinated complex, L₂Co(NCO)₂, (L = 1-methylbenzimidazole) has been synthesized and characterized by IR spectroscopy, elemental analyses, and single crystal X-ray diffraction. The crystal is monoclinic, a = 14.522(2) Å, b = 14.610(2) Å, c = 8.6850(13) Å, β = 92.037(3)°, Z = 4, sp. gr. P2₁/c. Bond lengths Co–N(L) are equal to 2.0165(16) and 2.0174(15) Å, Co–O(NCO) are 1.944(2) and 1.945(2) Å. Intermolecular C–H···O, C–H···N, and C–H···π interactions link the molecules into three-dimensional networks in the crystal.     

Mathematical simulation and X-ray diffraction investigation of the crystal structure of (R)-[(R)-o-(1-N,N-dimethylaminoethyl)phenyl]-2,5-dimethoxyphenyl(phenyl)methanol

The crystal structure of (R)-[(R)-o-(1-N,N-dimethylaminoethyl)phenyl]-2,5-dimethoxyphenyl(phenyl)methanol is mathematically simulated by the discrete modeling of molecular packings. A complete set of possible model variants is analyzed using the proposed algorithm with the aim of choosing the appropriate models that can serve as starting models for solving and refining the crystal structure from X-ray diffraction data. The crystals of the compound under investigation are monoclinic, a = 9.268(2) Å, b = 8.802(2) Å, c = 13.176(3) Å, β = 94.01(3)°, space group P2₁, and Z = 2. The structure is solved for a starting model calculated using the discrete modeling method and refined by the full-matrix least-squares procedure to R(F) = 0.037 and ωR(F ²) = 0.097.     

(Imidazole)(3,3′-trimethylenedinitrilo bis (2-butanone oximate)) copper(II) perchlorate: Synthesis and crystal structure of a five-coordinate copper-protein model complex

The synthesis and crystal structure of the novel pentacoordinated complex [Cu(DOHPN)(IMI-DAZOLE)] (ClO4), (DOHPN=(3,3′-trimethylenedinitrilo bis 2-butanone oxime) are reported. The X-ray crystal structure (space groupP2₁/n, a=11.349(2) Å,b=14.241(3) Å,c= 12.635(3) Å; α=90°, β=100.21 (3)°, γ=90°) shows that the copper(II) ion occupies a distorted square-pyramidal geometry with the imidazole ligand occupying the axial position. The copper(II)-(N)imidazole distance is 2.125(3) Å and the copper(II)-tetraaza plane distance is 0.385/Å. The tetraaza ligand DOHPN adopts a “butterfly-like” geometry with a dihedral angle of 149.69°. The title complex is the first structurally characterized compound of the series [Cu(DOHPN)(axial ligand)]ⁿ⁺ where the axial ligand is a neutral N-heterocycle with known biological relevance. A comparison of the structural parameters with those observed when the axial ligand is H₂O or NCS^? (N-bonded) gives the following series with increasing metal-ligand interaction: H₂O>IMIDAZOLE>NCS^? (N-bonded).     

Crystal structure of 5-(2′-aminophenyl)-2-dimethylamino-1,3,4-thiadiazole

The crystal structure of 5-(2′-Aminophenyl)-2-dimethylamino-1,3,4-thiazole is determined by X-ray diffraction. The compound is prepared by an unusual recyclization of 3-N, N-dimethylthioureidoquinazolin-4(3H)-one. The crystal is monoclinic, space group P2₁/c, a = 7.420(2) Å, b = 10.466(5) Å, c = 14.752(9) Å, β = 109.2(4)°, ρ_calcd = 1.359 g/cm³, and Z = 4 for the C₁₀H₁₂N₄S composition. The molecule consists of the thiadiazole and phenyl rings and the dimethylamine N(CH₃)₂ and amine NH₂ groups attached to the rings. The molecule as a whole is planar. The dihedral angle between the rings is 8.9°. The N(1) and N(4) atoms in the molecule are bound through the intramolecular interaction (2.76 Å). Molecules, which are linked in pairs by antiparallel hydrogen bonds, form a framework structure.     

Synthesis,Crystal Structure and Characterization of (Z)-2-N′-hydroxyisonicotinamidine

The compound (Z)-2-N′-hydroxyisonicotinamidine, (2) was synthesized and characterized by ¹H NMR, FT-IR, FAB-Mass, UV-Visible Spectra, and elemental Analysis. Its molecular structure was solved by single crystal X-ray diffraction method. The title molecule, C₆H₇N₃O is crystallized in the orthorhombic crystal system with the space group Pna2₁ and with unit cell parameters a = 12.5664(8) Å, b = 8.8622(6) Å, c = 5.7953(4) Å, α = 90°, β = 90°, γ = 90°, and Z = 4. The molecular and crystal structure of the title molecule is stabilized by an intramolecular interaction of the type N—H···O, and the intermolecular interactions of types N—H···N and O—H···N.     

X-ray structure investigation of 1-acetoxy-1-cyano-2-naphthylethylene and 1,1-dicyano-2-naphthylethylene

The crystal structures of 1-acetoxy-1-cyano-2-naphthylethylene (I) and 1,1-dicyano-2-naphthylethylene (II) are determined by X-ray structure analysis. Crystals I are monoclinic; at 25° C, the unit cell parameters are as follows: a = 17.308(6) Å, b = 4.507(1) Å, c = 17.845(5) Å, β = 107.90(2)°, V = 1324.7(7) ų, d _calcd = 1.260 g/cm³, Z = 4, and space group P2₁/n. Crystals II are monoclinic; at 25°C, the unit cell parameters are a = 3.827(1) Å, b = 15.784(4) Å, c = 17.226(2) Å, β = 91.22(2)°, V = 1040.3(4) ų, d _calcd = 1.304 g/cm³, Z = 4, and space group P2₁/n. It is revealed that, in crystal structures of I and II, the molecular stacks characteristic of compounds of this series are formed through stacking contacts along the direction of the smallest lattice parameter.     

X-ray structure analysis of 5N-ethyl-8-carboxy-9-oxo-11-methyl-pyrido[2,1-b]quinazoline

The crystal structure of 5N-ethyl-8-carboxy-9-oxo-11-methyl-pyrido[2,1-b]quinazoline (C₁₆H₁₆N₂O₃) has been determined by X-ray diffraction analysis. The compound crystallizes in the monoclinic crystal system (space group P2₁/c) with the unit cell parameters a = 9.775(1) Å, b = 15.868(1) Å, c = 9.799(1) Å, β = 113.50(1)°, Z = 4. The benzene ring is planar, the pyrimidine ring exists in 11β-sofa conformation, and the pyridone ring deviates slightly from planarity. The crystal packing exhibits intra-and intermolecular interactions of the O-H?O, C-H?O, and C-H?N types.     

Crystal structure of the double magnesium zirconium orthophosphate at temperatures of 298 and 1023 K

Double magnesium zirconium orthophosphate Mg_0.5Zr₂(PO₄)₃ is synthesized by the sol-gel method. The compound prepared is characterized using electron probe microanalysis and X-ray diffraction. The crystal structure of the orthophosphate is refined by the Rietveld method in space group P2₁/n (Z = 4) at temperatures of 298 K [a = 12.4218(2) Å, b = 8.9025(2) Å, c = 8.8218(2) Å, β = 90.466(1)°] and 1023 K [a = 12.4273(5) Å, b = 8.9453(4) Å, c = 8.8405(4) Å, β = 90.320(3)°]. It is demonstrated that an increase in the temperature leads to an anisotropic expansion of the unit cell of the phosphate structure, but the structural type remains unchanged.     

Crystal and molecular structures of [Co(<Emphasis Type="Italic">D</Emphasis>H)(<Emphasis Type="Italic">o-phen</Emphasis>)<Subscript>2</Subscript>][BF<Subscript>4</Subscript>]<Subscript>2</Subscript> · 2H<Subscript>2</Subscript>O

The crystal structure of a new mixed-ligand complex [Co(DH)(o-phen)₂][BF₄]₂ · 2H₂O is determined by X-ray diffraction. The crystal is monoclinic, a = 12.2081(11) Å, b = 14.3474(9) Å, c = 17.7393(16) Å, β = 104.95(1)°, and space group P2₁/c. The coordination octahedron of Co³⁺ is formed by two nitrogen atoms of the dimethylglyoxime molecule and four nitrogen atoms of o-phenanthroline molecules. The dimethylglyoxime molecule is singly deprotonated and acts as DH^?. The mean Co-N distances for dioxime and o-phenanthroline are 1.911 and 1.964 Å, respectively. The key role in the formation of the crystal structure is played by [BF₄]^? outer-sphere anions and crystallization water molecules, which form an extended hydrogen-bond system.     

[NaBi(EDTA)(H2O)3]n: synthesis, crystal structure, and thermal behavior

The synthesis and crystal structure of the EDTA complex [NaBi(EDTA)(H₂O)₃]_n are reported. It crystallizes in the monoclinic crystal system (space groupP2₁/c,a=6.822(1)Å,b=16.733(6)Å,c=13.763(2)Å, β=97.13(2)°). Bi(EDTA) entities are connected through carboxylate bridges resulting in layers parallel to the (010) plane. These layers are strongly linked by Na carboxylate and Na?OH₂ bridging interactions, establishing short Bi?Na and Na?Na distances. Pyrolysis of this complex under sulfur vapor between 600 and 900°C leads to the mixed sulfide NaBiS₂. Pyrolysis in air shows a very complicated decomposition mechanism and the probable formation of a bimetallic oxycarbonate.     

Crystal structure of <Emphasis Type="Italic">p</Emphasis>-carboxyphenylhydrazone benzoylacetone

The crystal structure of p-carboxyphenylhydrazone benzoylacetone is determined. The crystals are monoclinic, a = 13.614(4) Å, b = 11.388(2) Å, c = 20.029(6) Å, β = 104.82(2)°, V = 2339(9) ų, Z = 8, space group C2/c, and R = 0.038 for 1622 reflections with I > 2σ(I). The crystal is built of C₁₇H₁₄N₂O₄ neutral molecules that are linked by O-H?O hydrogen bonds between the carboxyl groups into centrosymmetric pseudodimers. The effect of carboxylation of the phenylhydrazone fragment and the position of the carboxyl group on the molecular packing in the crystal is determined. The N(1)-H(1N)?O(1) intramolecular hydrogen bond (N-H, 0.94 Å; H?O, 1.87 Å; N?O, 2.59 Å; and the N-H?O angle, 133°) is formed in the molecule.     

Synthesis and structural study of 1-(N,N-diethylamino)-2,2-bis(2-nitrophenylthio)ethene

The synthesis, variable temperature NMR spectra, and crystal structures of two crystalline forms, 2a and 2b, of the enamine 1-(N,N-diethylamino)-2,2-bis(2-nitrophenylthio)ethene have been obtained. Both forms crystallize in the monoclinic space group P2₁/a. The two phases have similar molecular structures but possess different intermolecular C–H······O hydrogen bonding interactions. Both forms exhibit disorder within the NEt₂ fragment at 298 K: sufficient disorder persisted with 2a (orange needles) down to 100 K to make the geometric parameters pertaining to the enamine fragment unreliable. The disorder was effectively eliminated on cooling 2b down (red colored blocks) to 150 K. Cell dimensions for the 2a-phase are at 100 K: a = 11.1030(4) Å, b = 15.1325(7) Å, c = 12.4504(7) Å, β = 114.606(3)°, while for the 2b-phase at 150 K, a = 15.5206(4) Å, b = 7.6958(2) Å, c = 15.7137(3) Å, β = 92.580(7)°. The C–N bond length in the β-form at 150 K of 1.335(3) Å indicates considerable double bond character: the rotational barrier of the C–N bond in CDCl₃ was calculated to be 52.4 kJ mol^?1.     

Crystal structures of two modifications of sodium pentahydrogendiphosphate NaH5(PO4)2

Two crystalline modifications of NaH₅(PO₄)₂ are obtained by the reaction of Na₂CO₃ with an excess of orthophosphoric acid. The crystal structures of α-and β-NaH₅(PO₄)₂ are determined by X-ray diffraction analysis. The crystal data are a = 8.484(4) Å, b = 7.842(3) Å, c = 10.353(4) Å, β = 90.50(3)°, V = 689.3(3) ų, space group P2₁/c, Z = 4, and R ₁ = 0.0250 for the α modification and a = 7.127(2) Å, b = 13.346(4) Å, c = 7.177(2) Å, β = 95.5(2)°, V = 679.5(3) ų, space group P2₁/c, Z = 4, and R ₁ = 0.0232 for the β modification. Based of the hydrogen-bond system, the formulas of the α and β modifications can be represented as Na(H₂PO₄)(H₃PO₄) and Na[H(H₂PO₄)₂], respectively. They correspond to the stable and metastable forms of the compound.     

Synthesis and structure of zinc iodide complex with thiocarbamide, [Zn(CH4N2S)2I2]

A complex compound of zinc iodide with thiocarbamide [Zn(CH₄N₂S)₂I₂] is obtained and its structure is studied by X-ray diffraction. Crystals are monoclinic, a = 10.494(2) Å, b = 7.473(2) Å, c = 14.871(4) Å, β = 91.354(18)°, V = 1165.9(5) ų, space group P2₁/c, Z = 4. The structural unit of the crystal is molecular complex [Zn(CH₄N₂S)₂I₂], in which the zinc atom is coordinated by sulfur atoms of two thiocarbamide molecules and two iodine atoms.     

Crystal structures of oxalate-bearing cancrinite with an unusual arrangement of CO<Subscript>3</Subscript> groups and sulfate-rich davyne

The crystal structures of two unusual varieties of cancrinite-group minerals—oxalate-bearing cancrinite from the Kovdor massif (Kola Peninsula) and the sulfate end member of the davyne series from the Sar-e Sang mine (Badakhshan, Afghanistan)—were studied by single-crystal X-ray diffraction. The unit-cell parameters of the hexagonal cells are a = 12.688(4) Å, c = 5.189(1) Å and a = 12.773(1) Å, c = 5.334(1) Å, sp. gr. P6₃; the R factors are 0.034 and 0.035, respectively. The presence of oxalate groups in cancrinite as admixtures is one of the factors responsible for the shift of CO₃ groups in wide channels.     

X-ray mapping in heterocyclic design: XIII. Structure of substituted tetrahydroquinolines

The structures of 4-methyl-2-chloro-5,6,7,8-tetrahydroquinoline [a = 8.138(2) Å, b = 11.127(4) Å, c = 11.234(2) Å, β = 111.30(2)°, Z = 4, space group P2₁/c, 4-methyl-2-methoxy-5,6,7,8-tetrahydroquinoline [a = 5.7651(16) Å, b = 8.530(2) Å, c = 10.455(3) Å, α = 73.76(2)°, β = 86.95(2)°, γ = 83.97(2)°, Z = 2, space group P $\bar 1$ , 4-methyl-2-(4-chlorophenacyl)-5,6,7,8-tetrahydro-1H-quinolin-2-one [a = 8.873(2) Å, b = 17.137(2) Å, c = 24.515(4) Å, Z = 8, space group Pbn2₁], and 2-(4-chlorophenyl)-5-methyl-6,7,8,9-tetrahy-drooxazolo[3.2-a]quinolin-10-ylium perchlorate [a = 8.110(6) Å, b = 17.818(7) Å, c = 17.721(5) Å, β = 100.46(4)°, Z = 4, space group P2₁/c] are studied by single-crystal X-ray diffraction. The structures are solved by direct methods and refined by the full-matrix least-squares procedures in the anisotropic approximation to R = 0.0581, 0.0667, 0.0830, and 0.0607, respectively.