Prototropy and π‐electron delocalization for purine and its radical ions – DFT studies

Complete tautomeric equilibria and π‐electron delocalization were studied at the B3LYP/6‐311+G** level for neutral purine ( P ) and its charged radicals ( P ^+? and P ^??). All possible nine tautomers (four NH and five CH forms) and all possible 36 tautomeric equilibria (six NⁱH → N^kH, twenty NH → CH, and ten CⁱH → C^kH conversions) were considered. The greatest variations of the tautomeric equilibrium constants (as pK_T) were observed for the NH → CH conversions when proceeding from neutral to reduced purine ( P + e → P ^??). These variations completely change the tautomeric preferences. One‐electron oxidation ( P ? e → P ^+?) has considerably smaller effect on the pK_T values and does not change the tautomeric preferences. π‐Electron delocalization depends on the position of the moving proton and on the type of the electron transfer. For individual tautomers, some linear relations between the relative stabilities and the HOMA (harmonic oscillator model of aromaticity) indices occur for neutral and oxidized purine. For reduced purine, a scatter plot is found. Copyright © 2010 John Wiley & Sons, Ltd.     

Complexation of bis‐crown stilbene with alkali and alkaline‐earth metal cations. Ultrafast excited state dynamics of the stilbene‐viologen analogue charge transfer complex

The complex formation of bis(18‐crown‐6)stilbene ( 1 ) and its supramolecular donor‐acceptor complex with N,N′‐bis(ammonioethyl) 1,2‐di(4‐pyridyl)ethylene derivative ( 2 ) with alkali and alkaline‐earth metal perchlorates has been studied using absorption, steady‐state fluorescence, and femtosecond transient absorption spectroscopy. The formation of 1 ?Mⁿ⁺ and 1 ?(Mⁿ⁺)₂ complexes in acetonitrile was demonstrated. The weak long‐wavelength charge‐transfer absorption band of 1 · 2 completely vanishes upon complexation with metal cations because of disruption of the pseudocyclic structure. The spectroscopic and luminescence parameters, stability constants, and 2‐stage dissociation constants were calculated. The initial stage of a recoordination process was found in the excited complexes 1 ?M⁺ and 1 ?(M⁺)₂ (M = Li, Na). The pronounced fluorescence quenching of 1 · 2 is explained by very fast back electron transfer (τ_et = 0.397 ps). The structure of complex 1 · 2 was studied by X‐ray diffraction; stacked ( 1 · 2 )_m polymer in which the components were connected by hydrogen bonding and stacking was found in the crystal. These compounds can be considered as novel optical molecular sensors for alkali and alkaline‐earth metal cations.     

Tuning the absorption spectra and nonlinear optical properties of D‐π‐A azobenzene derivatives by changing the dipole moment and conjugation length: a theoretical study

The optical properties of several azobenzene derivatives were modulated by varying the dipole moments and conjugation lengths of the D‐π‐A systems. The relationship between the structure and absorption spectrum and polarizability was studied in the gas phase, THF and MeOH solutions, respectively, by using the density functional theory. The calculated absorption spectra and second‐order polarizabilities are in good agreement with the available experimental observations. In comparison with the D‐π‐A monomer, the H‐shaped D‐π‐A dimer almost doubles the dipole moments and hence increases the second‐order polarizabilities, without a significant shift in the maximum absorption bands. The addition of another azobenzol group between electron‐donating and ‐accepting groups increases the second‐order polarizabilities by 4–6 times, but leads to an evident red‐shift of about 65–80 nm in spectra. The relative second‐order polarizability of the halogen‐substituted derivatives is in the sequence of ? CF₃ > ? F > ? Cl > ? Br, without obvious substituent effects on the optical transparency. The D‐π‐A chromophores with the strong electron‐donating (amino) and ‐accepting (acetyl) substituent present the larger second‐order polarizabilities, at the cost of about 20 nm red‐shift of the maximum absorption lengths relative to the halogen‐substituted species. It is also demonstrated that both the linear and nonlinear optical properties augment with the increase in solvent polarity, accompanied by a red‐shift in the wavelengths of maximum absorption by about 18 and 23 nm, respectively, in THF and MeOH solutions. The changes in optical properties upon the structural modifications are further rationalized by the electronic structures of various H‐shaped dimers. Copyright © 2010 John Wiley & Sons, Ltd.     

Hydrogen‐bonded complexes of sulfonamides and thioamides with DMF: FT‐IR and DFT study,NBO analysis

The structure of H‐complexes of dimethylformamide (DMF) with N‐(2,2,2‐trichloro‐1‐hydroxyethyl)‐p‐toluenesulfonamide (1), N‐[1‐(4‐chlorophenylsulfonylamino)‐2,2,2‐trichloro)ethyl]dithiooxamide (2), N,N'‐bis[2,2‐dichloro‐1‐(4‐chlorophenylsulfonylamino)‐2‐phenylethyl]ethanebis(thioamide) (3) and N,N'‐bis[2,2,2‐trichloro‐1‐(phenylsulfonylamino)ethyl]ethanebis(thioamide) (3a) as proton donors was investigated using Fourier transform infrared spectroscopy and Density Functional Theory calculations. According to calculations, the interaction of DMF with the sulfonamide and thioamide NH groups in the complexes strongly affects the intramolecular H‐bonding in 1–3. From the natural bond orbital analysis, complexation with DMF strongly decreases the energy of the intramolecular N?H · · · S = C bonds, up to their rupture. Variation of the strength of the intra‐ and intermolecular H‐bonds in the complexes is consistent with the calculated frequencies of the NH and OH stretching vibrations, and the analysis of the corresponding bands in the IR spectra allows to suggest the preferable structure of the formed H‐complexes. Copyright © 2013 John Wiley & Sons, Ltd.     

Ab initio study on N,N′,N″‐triaminoguanidine

Electronic structure calculations and second‐order delocalizations in N,N′,N′′‐triaminoguanidine ( TAG ) have been studied by employing ab initio MO and density functional methods. There are total 10 rotational isomers on the potential energy (PE) surface of TAG . The effect of three amino groups substitution on guanidine ( Gu ) has been studied in terms of the primary and the secondary electron delocalizations in TAG by employing Natural Population Analysis (NPA). An increased electron delocalization is observed in protonated triaminoguanidine ( TAGP ) due to the three strong intramolecular hydrogen bonds and hence accounts for its extra stability. The increase in the electron delocalization upon protonation in TAG can be compared to that in guanidine. The absolute proton affinity (APA) of TAG is less than that of Gu . HOMA and NICS studies have been carried out to understand electron delocalization in TAGP . Copyright © 2007 John Wiley & Sons, Ltd.     

Investigation of cation–anion interaction in 1‐(2‐hydroxyethyl)‐3‐methylimidazolium‐based ion pairs by density functional theory calculations and experiments

Gas‐phase structure, hydrogen bonding, and cation–anion interactions of a series of 1‐(2‐hydroxyethyl)‐3‐methylimidazolium ([HOEMIm]⁺)‐based ionic liquids (hereafter called hydroxyl ILs) with different anions (X = [NTf₂]^–, [PF₆]^–, [ClO₄]^–, [BF₄]^–, [DCA]^–, [NO₃]^–, [AC]^– and [Cl]^–), as well as 1‐ethyl‐3‐methylimizolium ([EMIm]⁺)‐based ionic liquids (hereafter called nonhydroxyl ILs), were investigated by density functional theory calculations and experiments. Electrostatic potential surfaces and optimized structures of isolated ions, and ion pairs of all ILs have been obtained through calculations at the Becke, three‐parameter, Lee–Yang–Parr/6‐31 + G(d,p) level and their hydrogen bonding behavior was further studied by the polarity and Kamlet–Taft Parameters, and ¹H‐NMR analysis. In [EMIm]⁺‐based nonhydroxyl ILs, hydrogen bonding preferred to be formed between anions and C2–H on the imidazolium ring, while in [HOEMIm]⁺‐based hydroxyl ILs, it was replaced by a much stronger one that preferably formed between anions and OH. The O–H···X hydrogen bonding is much more anion‐dependent than the C2–H···X, and it is weakened when the anion is changed from [AC]^– to [NTf₂]^–. The different interaction between [HOEMIm]⁺ and variable anion involving O–H···X hydrogen bonding resulted in significant effect on their bulk phase properties such as ¹H‐NMR shift, polarity and hydrogen‐bond donor ability (acidity, α). Copyright © 2011 John Wiley & Sons, Ltd.     

FT‐Raman,IR and UV‐visible spectral investigations and ab initio computations of a nonlinear food dye amaranth

Amaranth (E123, Food Red 9, FD & C Red 2) is a sulfonated azo dye used as a color additive in foodstuffs, pharmaceuticals and cosmetics. FT‐IR and FT‐Raman spectra of amaranth were recorded and analyzed. Density functional theory (DFT) calculations were performed to derive the equilibrium geometry, vibrational wavenumbers, intensities and first hyperpolarizability. The results of the optimized molecular structure gave clear evidence for the intramolecular charge transfer (ICT) and intramolecular hydrogen bonding in the molecule. Azo stretching wavenumbers are lowered owing to conjugation and π‐electron delocalization. Time‐dependent density functional theory (TD‐DFT) calculations of the electronic spectra were performed on the optimized structure and compared with the experimental UV‐visible spectrum. Vibrational spectra, natural bonding orbitals (NBO) analysis and optimized geometry indicate C H·N hydrogen bonding in the molecule. The first hyperpolarizability of the molecule was calculated. The optical nonlinearity of the dye is due to the donation of the electron density from the hydroxyl group of the conjugated system via naphthalene ( 2 ) ring into π*‐orbital of the azo moiety. Copyright © 2008 John Wiley & Sons, Ltd.     

Recognition of aromatic amino acids and proteins with p‐sulfonatocalix[4]arene – A luminescence and theoretical approach

The host–guest interaction of p‐sulfonatocalix[4]arene (p‐SC4) with aromatic amino acids (AAs) and two proteins has been studied using UV–Vis absorption, fluorescence, and theoretical methods. Spectral studies supported by binding constant and calculated binding energy (BE) values show that p‐SC4 binds more strongly with tyrosine compared with other AAs. The application of Bader's theory of atoms in molecule shows the involvement of various types of noncovalent interactions in the formation of the host–guest complexes. Both tyrosine and histidine have strong electrostatic interaction with the sulfonato group and other two AAs have dominant π?π interaction with the aromatic rings of calixarene. In addition, the role of C?H···O, C?H···π and lone pair···π (lp···π) interactions in the stabilization of p‐SC4‐AA complexes has also been realized from the atoms in molecule analysis. The electron density at the bond critical points varies with the calculated BEs and trend in BEs is in good agreement with the experimental binding constant values. The work has been extended to the binding of p‐SC4 with proteins, bovine serum albumin and ovalbumin. Ovalbumin exhibits stronger binding with p‐SC4 than bovine serum albumin. Copyright © 2012 John Wiley & Sons, Ltd.     

Catalysis by hydrogen chloride in the gas‐phase elimination kinetics of 2‐phenyl‐2‐propanol and 3‐methyl‐1‐buten‐3‐ol

A homogeneous, molecular, gas‐phase elimination kinetics of 2‐phenyl‐2‐propanol and 3‐methyl‐1‐ buten‐3‐ol catalyzed by hydrogen chloride in the temperature range 325–386 °C and pressure range 34–149 torr are described. The rate coefficients are given by the following Arrhenius equations: for 2‐phenyl‐2‐propanol log k₁ (s^?1) = (11.01 ± 0.31) ? (109.5 ± 2.8) kJ mol^?1 (2.303 RT)^?1 and for 3‐methyl‐1‐buten‐3‐ol log k₁ (s^?1) = (11.50 ± 0.18) ? (116.5 ± 1.4) kJ mol^?1 (2.303 RT)^?1. Electron delocalization of the CH₂?CH and C₆H₅ appears to be an important effect in the rate enhancement of acid catalyzed tertiary alcohols in the gas phase. A concerted six‐member cyclic transition state type of mechanism appears to be, as described before, a rational interpretation for the dehydration process of these substrates. Copyright © 2007 John Wiley & Sons, Ltd.     

Theoretical studies on structure and performance of [1,2,5]‐oxadiazolo‐[3,4‐d]‐pyridazine‐based derivatives

Based on energetic compound [1,2,5]‐oxadiazolo‐[3,4‐d]‐pyridazine, a series of functionalized derivatives were designed and first reported. Afterwards, the relationship between their structure and performance was systematically explored by density functional theory at B3LYP/6‐311 g (d, p) level. Results show that the bond dissociation energies of the weakest bond (N–O bond) vary from 157.530 to 189.411 kJ · mol^?1. The bond dissociation energies of these compounds are superior to that of HMX (N–NO_2, 154.905 kJ · mol^?1). In addition, H1, H2, H4, I2, I3, C1, C2, and D1 possess high density (1.818–1.997 g · cm^?3) and good detonation performance (detonation velocities, 8.29–9.46 km · s^?1; detonation pressures, 30.87–42.12 GPa), which may be potential explosives compared with RDX (8.81 km · s^?1, 34.47 GPa ) and HMX (9.19 km · s^?1, 38.45 GPa). Finally, allowing for the explosive performance and molecular stability, three compounds may be suggested as good potential candidates for high‐energy density materials. Copyright © 2016 John Wiley & Sons, Ltd.     

Evolution of excess electron binding motifs under both internal‐push (from exo C–F bonds) and external‐push (from endo C–F bonds) electron effects in endohedral metallofullerenes with endo C–F bonds

How does the endo C–F bond influence the excess electron binding motif? For lithium‐doped endohedral perfluorofullerenes with endo C–F bonds, under both internal‐push (from exo C–F bonds) and external‐push (from endo C–F bonds) electron effects, the singly occupied molecular orbital electron cloud of the sphere‐like Li···F₈@C₆₀F₅₂ (D₂) is partially dispersed within the σ_p–s antibonding orbital of endo C–F bonds and the space between C^δ+–F_endo^δ– double electric layers, which makes Li···F₈@C₆₀F₅₂ have partial excess electron (electride characteristics) and partial lithium salt characteristics, while in the tube‐like Li···F₂@C₆₀F₅₈ (C_s), as the Li is changing from approaching F to keeping away from F and to approaching another one, the singly occupied molecular orbital electron cloud is mainly dispersed from within the p orbital of the short endo C–F bond to within the middle of the two F atoms and again to within the p orbital of the short endo C–F bond, which indicates an evolution from lithium salt characteristic to excess electron characteristic, and again to lithium salt characteristic. Copyright © 2012 John Wiley & Sons, Ltd.     

Pulse radiolysis studies of 2‐ and 3‐hydroxybenzyl alcohols: inhibition of dehydration of ·OH‐(hydroxybenzyl alcohols) adducts by H2PO4− ions

Reactions of ·OH/O ^.? radicals and H‐atoms as well as specific oxidants such as Cl₂^.? and N₃· radicals have been studied with 2‐ and 3‐hydroxybenzyl alcohols (2‐ and 3‐HBA) at various pH using pulse radiolysis technique. At pH 6.8, ·OH radicals were found to react quite fast with both the HBAs (k = 7.8 × 10⁹ dm³ mol^?1 s^?1 with 2‐HBA and 2 × 10⁹ dm³ mol^?1 s^?1 with 3‐HBA) mainly by adduct formation and to a minor extent by H‐abstraction from ? CH₂OH groups. ·OH‐(HBA) adduct were found to undergo decay to give phenoxyl type radicals in a pH dependent way and it was also very much dependent on buffer‐ion concentrations. It was seen that ·OH‐(2‐HBA) and ·OH‐(3‐HBA) adducts react with HPO₄^2? ions (k = 2.1 × 10⁷ and 2.8 × 10⁷ dm³ mol^?1 s^?1 at pH 6.8, respectively) giving the phenoxyl type radicals of HBAs. At the same time, this reaction is very much hindered in the presence of H₂PO ions indicating the role of phosphate ion concentration in determining the reaction pathway of ·OH adduct decay to final stable product. In the acidic region adducts were found to react with H⁺ ions. At pH 1, reaction of ·OH radicals with HBAs gave exclusively phenoxyl type radicals. Proportion of the reducing radicals formed by H‐abstraction pathway in ·OH/O ^.? reactions with HBAs was determined following electron transfer to methyl viologen. H‐atom abstraction is the major pathway in O ^.? reaction with HBAs compared to ·OH radical reaction. H‐atom reaction with 2‐ and 3‐HBA gave transient species which were found to transfer electron to methyl viologen quantitatively. Copyright © 2010 John Wiley & Sons, Ltd.     

Time‐dependent density functional theory study on the excited‐state hydrogen bonding strengthening of photoexcited 4‐amino‐1,8‐naphthalimide in hydrogen‐donating solvents

The time‐dependent density functional theory (TDDFT) method was performed to investigate the excited‐state hydrogen bonding dynamics of 4‐amino‐1,8‐naphthalimide (4ANI) as hydrogen bond acceptor in hydrogen donating methanol (MeOH) solvent. The ground‐state geometry optimizations, electronic transition energies and corresponding oscillation strengths of the low‐lying electronically excited states for the isolated 4ANi and hydrogen‐bonded 4ANi‐(MeOH)_1,4 complexes were calculated by the DFT and TDDFT methods, respectively. We demonstrated that the intermolecular hydrogen bond C═O···H–O and N–H···O–H in the hydrogen‐bonded 4ANi‐(MeOH)_1,4 is strengthened in the electronically excited state, because the electronic excitation energies of the hydrogen‐bonded complex are correspondingly decreased compared with that of the isolated 4ANi. The calculated results are consistent with the mechanism of the hydrogen bond strengthening in the electronically excited state, while contrast with mechanism of hydrogen bond cleavage. Furthermore, we believe that the transient hydrogen bond strengthening behavior in electronically excited state of fluorescent dye in hydrogen‐donating solvents exists in many other systems in solution. Copyright © 2013 John Wiley & Sons, Ltd.     

1,3‐Bis(2′‐hydroxyethyl)imidazolium ionic liquids: correlating structure and properties with anion hydrogen bonding ability

A series of 1,3‐bis(2′‐hydroxyethyl)imidazolium ionic liquids is reported where ¹H NMR chemical shift values and thermal stabilities (T_d), as determined by thermogravimetric analysis, are correlated with the hydrogen bonding capability of various anions ([Cl^?], [Br^?], [CF₃CO₂^?], [NO₂^?], [MsO^?], [NO₃^?], [TfO^?], [BF₄^?], [NTf₂^?], and [PF₆^?]). Use of anions with the strongest hydrogen bonding capability, such as chloride [Cl^?], bromide [Br^?], and trifluoroacetate [CF₃CO₂^?], led to the furthest observed downfield chemical shift values in DMSO‐d₆ and the poorest thermal stabilities ([CF₃CO₂^?] < 200 °C). Thermal stabilities in excess of 350 °C and upfield chemical shift values were observed for ionic liquids, which employed the weakly coordinating triflate [OTf^?], tetrafluoroborate [BF₄^?], or bis(trifluoromethylsulfonyl)imide [NTf₂^?] anion. Optimized structures of selected ionic liquids, as determined by density functional theory calculations at the B3LYP/6‐31G + (d,p) level, indicated that the anion preferred to be located above the imidazolium ring and in close proximity to the hydroxyl groups. Calculated dissociation energies (ΔE) and a comparison of key bonding distances (C2―H, (C2)H···X, O―H, and (O)H···X) also confirmed this structural preference. Copyright © 2013 John Wiley & Sons, Ltd.     

Hydrogen bonding and aromaticity in the guanine–cytosine base pair interacting with metal cations (M = Cu+, Ca2+ and Cu2+)

The influence of metal cations (M?=?Cu⁺, Ca²⁺ and Cu²⁺) coordinated to the N₇ of guanine on hydrogen bonding and aromaticity of the guanine–cytosine base pair has been analysed with the help of delocalization indices using the B3LYP functional. Our analysis shows that the strengthening of the N₁···N₃ and N₂···O₂ hydrogen bonds and the weakening of the O₆···N₄ hydrogen bond is mainly caused by the modification of donor–acceptor (covalent) interactions rather than to a significant change of electrostatic interactions. On the other hand, the increase of the aromaticity of the guanine and cytosine six-membered rings because of the interaction with Cu⁺ and Ca²⁺ is attributed to the strengthening of hydrogen bonding in the guanine–cytosine pair. The observed reduction of aromaticity in the five- and six-membered rings of guanine due to ionization or interaction with Cu²⁺ is caused by the oxidation process that removes a?π?electron disrupting the?π?electron distribution.     

NIR‐FT Raman and FT‐IR spectral investigations of the nonlinear optical chromophore p‐bromoacetanilide

Vibrational spectral analysis of the hydrogen‐bonded nonlinear optical (NLO) material p‐bromo acetanilide (PBA) was carried out using NIR‐FT‐Raman and FT‐IR spectroscopy. Ab initio molecular orbital computations were performed at HF/6‐31G (d) level to derive equilibrium geometry, vibrational wavenumbers, intensities and first hyperpolarizability. The lowering of the imino stretching wavenumbers suggests the existence of strong intermolecular N H···O hydrogen bonding, which was substantiated by the natural bond orbital (NBO) analysis. The vibrational spectra confirm that the charge‐transfer interaction between the  NHCOCH₃ group and—Br through phenyl ring is responsible for simultaneous strong IR and Raman activation of the ring mode 8a. Vibrational analysis indicates that the lowering of stretching wavenumbers of methyl group due to electronic effects simultaneously caused by induction and hyperconjugation is due to the presence of the oxygen atom. The presence of blue‐shifting H‐bonds of CH stretching wavenumbers, simultaneous activation of carbonyl stretching mode, the strong activity of low‐wavenumber H‐bond stretching vibrations and the role of intramolecular charge transfer in making the molecule NLO active have been analyzed on the basis of the vibrational spectral features. Copyright © 2007 John Wiley & Sons, Ltd.     

Theoretical investigations on 4,4′,5,5′‐tetranitro‐2,2′‐1H,1′H‐2,2′‐biimidazole derivatives as potential nitrogen‐rich high energy materials

The ―NH₂, ―NO₂, ―NHNO₂, ―C(NO₂)₃ and ―CF(NO₂)₂ substitution derivatives of 4,4′,5,5′‐tetranitro‐2,2′‐1H,1′H‐2,2′‐biimidazole were studied at B3LYP/aug‐cc‐pVDZ level of density functional theory. The crystal structures were obtained by molecular mechanics (MM) methods. Detonation properties were evaluated using Kamlet–Jacobs equations based on the calculated density and heat of formation. The thermal stability of the title compounds was investigated via the energy gaps (?E_{LUMO ? HOMO}) predicted. Results show that molecules T5 (D = 10.85 km·s^?1, P = 57.94 GPa) and T6 (D = 9.22 km·s^?1, P = 39.21 GPa) with zero or positive oxygen balance are excellent candidates for high energy density oxidizers (HEDOs). All of them appear to be potential explosives compared with the famous ones, octahydro‐1,3,5,7‐tetranitro‐1,3,5,7‐tetraazocane (HMX, D = 8.96 km·s^?1, P = 35.96 GPa) and hexanitrohexaazaisowurtzitane (CL‐20, D = 9.38 km·s^?1, P = 42.00 GPa). In addition, bond dissociation energy calculation indicates that T5 and T6 are also the most thermally stable ones among the title compounds. Copyright © 2014 John Wiley & Sons, Ltd.     

Substituent effects on conformational preference in α‐substituted α‐fluorophenylacetic acid methyl ester model systems for chiral derivatizing agents

In connection with study of chiral derivatizing agents (CDAs) for NMR determination of absolute configuration of organic compounds, factors controlling the conformational preference between syn‐ and anti‐forms in α‐substituted α‐fluorophenylacetic acid methyl ester (FC(X)(Ph)COOMe) model systems were theoretically investigated. Substituents X at the stereogenic carbon atom were X = H, C?CH and CH₃, the electronic and steric properties of which were significantly different from each other. The model system with X = C?CH and that with X = CH₃ were found to be possible candidates for fluorine‐containing CDAs. The syn conformation is stable compared with the anti one by 0.7 kcal mol^?1 for the ester with X = C?CH. On the other hand, the anti conformation is stable compared with the syn one by 0.5 kcal mol^?1 for the ester with X = CH₃. Both natural bond orbital (NBO) analysis and deletion of selected orbitals based on the donor–acceptor NBO scheme were adopted for semi‐quantitative estimation of factors responsible for the conformational preference as well as a qualitative inspection of occupied canonical molecular orbitals (MOs). It was shown that [σ–(σ* + π*)(C?O)] and [σ–σ*(Ph) and π(Ph)–σ*] hyperconjugations are the main factors controlling the conformational preferences between the syn and anti conformations. Other types of effects such as electrostatic effects were also investigated. The role of the fluorine atom was also clarified. Copyright © 2009 John Wiley & Sons, Ltd.     

Prediction models for the Abraham hydrogen bond donor strength: comparison of semi‐empirical,ab initio,and DFT methods

Hydrogen bonding has a great impact on the partitioning of organic compounds in biological and environmental systems as well as on the shape and functionality of macromolecules. Electronic characteristics of single molecules, localized at the H‐bond (HB) donor site, are able to estimate the donor strength in terms of the Abraham parameter A. The quantum chemically calculated properties encode electrostatic, polarizability, and charge‐transfer contributions to hydrogen bonding. A recently introduced respective approach is extended to amides with more than one H atom per donor site, and adapted to the semi‐empirical AM1 scheme. For 451 organic compounds covering acidic ? CH, ? NH? , and ? OH groups, the squared correlation coefficient is 0.95 for the Hartree–Fock and density functional theory (B3LYP) level of calculation, and 0.84 with AM1. The discussion includes separate analyses for weak, moderate, and strong HB donors, a comparison with the performance of increment methods, and opportunities for consensus modeling through the combined use of increment and quantum chemical methods. Copyright © 2011 John Wiley & Sons, Ltd.     

Excited‐state hydrogen bonding dynamics of pyruvic acid and geminal‐diol, 2,2‐dihydroxypropanoic acid in aqueous solution: a DFT/TDDFT study

In this work, we present the optimized ground state geometrical structures, electronic excitation energies and corresponding oscillation strengths of the low‐lying electronically excited states for the isolated Tce‐CH3COCOOH and Tce‐CH3C(OH)2COOH as well as their corresponding hydrogen‐bonded dimers Tce‐CH3COCOOH‐H2O and Tce‐CH3C(OH)2COOH‐H2O through time‐dependent density functional theory method. It is found that the intermolecular hydrogen bonds C=O···H‐O are strengthened in the electronically excited states of the hydrogen‐bonded dimers Tce‐CH3COCOOH‐H2O and Tce‐CH3C(OH)2COOH‐H2O, in that the excitation energies of the related excited states for the hydrogen‐bonded dimers are decreased compared with those of the corresponding monomers. The calculated results are consistent with the rules that are first demonstrated by Zhao on the excited‐state hydrogen bonding dynamics. Copyright © 2012 John Wiley & Sons, Ltd.