Single- and double-electron charge transfer in collisions of α-particles with hydrogen molecules. II

Dependences of single-electron charge transfer cross sections on the molecule orientation are studied in collisions between α-particles and H₂ molecules in the ground state at collision energies E _c from 1 to 23 keV/u. Probabilities of single-electron capture were calculated in the independent electron approximation in the context of the close coupling equation method under the assumption that the hydrogen molecule consists of two independent hydrogen pseudoatoms. The total and partial single-electron capture cross sections averaged over all orientations of the molecule well agree with available experimental data at E _c > 5 keV/u.     

Single- and double-electron charge transfer in collisions of α-particles with hydrogen molecules

Total, partial, and angular differential cross sections of single- and double-electron charge transfer in collisions between α-particles and hydrogen molecules in the ground state in the interval of collision energies from 3 to 80 keV have been calculated. New data for charge transfer cross sections can be used for simulations and spectroscopy of α-particles in thermonuclear diverter plasma of nuclear reactors.     

On difference of properties between organic fluorine hydrogen bond C–H···F–C and conventional hydrogen bond

The existence of C–H···F–C hydrogen bonds in the complexes of trifluoromethane and cyclic molecule (oxirane, cyclobutanone, dioxane, and pyridine) has been experimentally proven by Caminati and co-workers. This study presents a theoretical investigation on these C–H···F–C hydrogen bonds at B97D/6-311++G^** and MP2/6-311++G^** levels, in terms of C–H vibrational frequency shifts, atoms in molecules characteristics, and the bonding feature of C–H···F–C hydrogen bonds. It is found that in three important aspects, there are significant differences in properties between C–H···F–C and conventional hydrogen bonds. The C–H···F–C hydrogen bonds show a blueshift in the C–H vibrational frequencies, instead of the X–H normal redshift in X–H···Y conventional hydrogen bonds. The natural bond orbital (NBO) analyses show that σ and p types of lone pair orbitals of the F atom to an antibonding σ^*_H–C orbital form a dual C–H···F–C hydrogen bond. Such a dual hydrogen bonding leads to the proton acceptor directionality of the C–H···F–C hydrogen bond softer. Our studies also show that the Laplacian of the electron density (▽²ρ_BCP) is not always a good criterion for hydrogen bonds. Therefore, we should not recommend the use of the Laplacian of the electron density as a criterion for C–H···F–C hydrogen bonds.     

Theoretical study of cooperativity between hydrogen bond‒hydrogen bond,halogen bond‒halogen bond and hydrogen bond‒halogen bond in ternary FX…diazine…XF (X = H and Cl) complexes

ABSTRACT

In the present work, the cooperativity between hydrogen bond?hydrogen bond, halogen bond?halogen bond and hydrogen bond?halogen bond in ternary FX…diazine…XF (X = H and Cl) complexes is theoretically investigated. The sign of cooperative energy (E_coop) obtained in all of the triads is positive which indicates that the ternary complex is less stable than the sum of the two isolated binary complexes. Moreover, our calculations show that E_coop value in triads increases as FX…pyridazine…XF > FX…pyrimidine…XF > FX…pyrazine…XF. In agreement with energetic, geometrical and topological properties, electrostatic potentials and coupling constants across ¹⁵N…X?¹⁹F (X = ¹H or ³⁵Cl) hydrogen and halogen bonds indicate that hydrogen and halogen bonds are weakened in the considered complexes where two hydrogen and halogen bonds coexist. As compared to N…H hydrogen bond, it is also observed that cooperativity has greater effect on N…Cl halogen bond.     

Charge transfer and charge transfer with excitation of a target ion in slow collisions of α particles with helium atoms. II

The cross sections of single- and double-electron capture in ³He²⁺-He collisions in the energy interval of incident α particles of 3–120 keV were obtained. The cross sections were calculated for the Coulomb trajectory of motion of nuclei in the context of the close-coupling equation method using the basis set of two-electron adiabatic molecular states. Introduction of additional requirements that must be satisfied by the numerical solutions of the system of coupled differential equations made it possible to obtain a good correspondence between the calculated values of total cross sections of single- and double-electron capture and the experimental data in the whole range of the considered collision energies.     

A quantum chemical study of tyrosyl reduction and O—O bond formation in photosystem II

Density functional theory has been used to study two of the main topics of oxygen evolution in photosystem II. The first concerns the reduction of the tyrosyl radical that occurs in every S-state transition. The two leading models, hydrogen atom transfer and electron transfer, have been investigated. In the present study, hydrogen atom transfer has the lower barrier. The second topic addressed is O—O bond formation in the S₃ to S₀ transition, where a Mn₃ complex including calcium and chloride cofactors was used as a model. The reaction is suggested to proceed from a bridging oxyl group to a radical hydroxyl, which combines to form the O—O bond with a hydroxide ligand of the Mn complex.     

Isotope effect of hydrated clusters of hydrogen chloride,HCl(H2O) n and DCl(H2O) n (n = 0–4): application of dynamic extended molecular orbital method

The recently proposed dynamic extended molecular orbital (DEMO) method is applied to the HCl(H₂O) _n and DCl(H₂O) _n (n = 0–4) clusters in order to explore the isotope effect on their structures, wavefunctions, and energies, theoretically. Since the DEMO method determines both electronic and nuclear wavefunctions simultaneously by optimizing all parameters including basis sets and their centres variationally, we can get the different nuclear orbitals for proton and deuteron as well as their electronic wavefunctions. The positions of the centres of nuclear orbitals show that the deuteron has weaker hydrogen bonding than the proton. There are three isomers in the case of n = 3 clusters, and less stable isomers have hydrogen transferred and non-transferred structures. In the conventional MO calculation, both hydrogen transferred and non-transferred isomers are calculated to be energy minima. When we have applied the DEMO method, only the hydrogen transferred structure is obtained for HCl(H₂O)₃, while both structures are optimized for DCl(H₂O)₃. Such strong H/D dependence on the structures of the HCl(H₂O) _n and DCl(H₂O) _n clusters can be expressed directly by using the DEMO method. The present application demonstrates that the DEMO method is a useful tool for analysing the anharmonicity and vibronic effects of a hydrogen bonding system.     

The strengthening effect of a hydrogen or lithium bond on the Z···N aerogen bond (Z = Ar,Kr and Xe): a comparative study

An ab initio study is performed on O₃Z···NCM···NCX (Z = Ar, Kr and Xe; M = H and Li; X = H, F and CH₃) complexes to investigate cooperativity effects between aerogen and hydrogen or lithium bonding interactions in these systems. To understand the cooperative effects, a detailed analysis of the binding distances, interaction energies and bonding properties is performed on these complexes. The results indicate that all Z···N and H/Li···N binding distances in the ternary complexes are shorter than those of corresponding binary systems. For a given M or X, cooperative energies increase as Z = Xe > Kr > Ar. Moreover, O₃Z···NCLi···NCX complexes exhibit a larger cooperative energy than O₃Z···NCH···NCX ones. The non-covalent interaction (NCI) index analysis indicates that the formation of an H/Li···N interaction in the ternary complexes shifts the location of the spike associated with the Z···N interaction towards the negative λ₂ρ values. This indicates that NCI analysis can be regarded as a useful tool for the study of cooperative effects between two different non-covalent interactions. Also, cooperative effects in O₃Z···NCM···NCX complexes make a decrease in ¹⁴N nuclear quadrupole coupling constants of NCH or NCLi molecule.     

Systematic study of rigid triaxiality in Ba–Pt nuclei and role of $$$$ subshell effect

A systematic variation of shape variables \(\beta \) and \(\gamma \) with N and \(N_\mathrm {p}N_\mathrm {n}\) is studied in the framework of an asymmetric rotor model of Davydov and Filippov for the \(Z=\) 50–82, \(N=\) 82–126 major shell space. The role of the \(Z=64\) subshell in producing smooth systematics has been discussed. The quadrupole moments are extracted after considering both axially symmetric and axially asymmetric nuclei. The correlation of \(\beta \) with \(\gamma \) together with the measured quadrupole moments indicates that \(\gamma \)-rigidity is better observed in nuclei with modest deformation.     

Effect of Coulomb repulsion on spin and orbital magnetism of cobalt–benzene complex: A relativistic density functional study

We have demonstrated electronic configurations and magnetic properties of single Co adatom on benzene (Bz) molecule in the framework of relativistic density functional theory. A sequence of fixed spin moment (FSM) calculations were carried out with and without Coulomb repulsion (U). We have investigated that varying the strength of Coulomb repulsion results to different equilibrium positions for the Co adatom on benzene molecule. It was shown that inclusion of the on-site Coulomb repulsion in the Co 3d orbitals affects significantly the geometry of Co–Bz complex. We also found two stable low-spin and high-spin multiplicities for the complex. The nature of the high-spin configuration was explained according to the Hubbard electron–electron correlation in 3d shell of the Co adatom. Our FSM results indicate that the high-spin state is a global minimum in the presence of Hubbard parameter U. The relativistic spin–orbit coupling and using orbital polarization correction induce considerable orbital magnetism in both low and high spin states of the Co–Bz complex. We have also calculated magnetic anisotropy energies for two spin states and we found out that an out-of-plane magnetic orientation of Co adatom is more favorable in the low spin state whereas the Coulomb repulsion (U = 2 eV and U = 4 eV) predicts an in-plane magnetic orientation for Co adatom. Our findings can be implicitly taken into account for the extended system of added single Co atom on graphene.     

Mechanistic dichotomy in (C–H–N) hydrogen transfer. Piezochemical determination of mechanisms in ENE reactions

Abstract

The mechanism of the ene reactions involving (C–H–N) hydrogen transfer is studied by high pressure kinetics. It is found that it is highly dependent on the ene component.     

The effect of orientation and distance between donor and acceptor molecules on the efficiency of singlet–singlet energy transfer in Langmuir–Blodgett films

Singlet–singlet energy transfer between molecules of fluorescein and oxazine dyes in Langmuir–Blodgett films is studied experimentally. The dependence of the energy-transfer efficiency on the distance shows that the quenching of the donor fluorescence is the most efficient when the layers of the donor and acceptor molecules are in a direct contact. An increase in the distance between the donor and acceptor layers leads to a decrease in the energy-transfer efficiency. To establish the mutual orientation of the donor and acceptor molecules, quantum-chemical calculations of the energy transfer process in the donor–acceptor pair are carried out. The calculations show that the best correlation of the experimental and calculated values of the energy-transfer efficiency is observed when the interacting particles are shifted relative to each other by about ~0.12 nm in parallel planes. The presented approach can be used to estimate the relative orientation of interacting particles in multimolecular ensembles.     

DFT study of isocyanate chemisorption on Cu(100): Correlation between substrate–adsorbate charge transfer and intermolecular interactions

The adsorption of isocyanate (? NCO) species on Cu(100) was studied using the density functional theory (DFT) and the periodic slab model. The calculations indicate that at low and intermediate coverages NCO adsorbs preferentially on bridge and hollow sites. Work function and dipole moment changes show a significant negative charge transfer from Cu to NCO. The resulting charged NCO species interact repulsively among themselves being these dipole–dipole interactions particularly intensive when they are adsorbed in adjacent sites. Consequently, isocyanates tend to be separated from each other generating the vacant sites required for the dissociation to N and CO. This condition for NCO dissociation has been suggested in the past from experimental observations. A comparison was also performed with the NCO adsorption on Pd(100). In particular, the calculated minimal energy barrier for NCO dissociation was found to be higher on Cu(100) than on Pd(100) in accord with the well known higher NCO stability on Cu(100).     

New trends along hydrogen polyoxides: unusually long oxygen–oxygen bonds in H2O6 and H2O7

By means of coupled cluster, G4 and B3LYP calculations, we characterised polyoxides H₂O₆ and H₂O₇. These two molecules behave very differently from lower polyoxides, given that some isomers present unusual bonding. In the case of H₂O₆, the central OO bond is predicted, to be 1.909 Å, at the CCSD(T)/cc-pVTZ level. Two conformational isomers of H₂O₆ display nearly the same enthalpy of formation, but only one of them has extremely long OO bonds. For H₂O₇, the most stable isomer also has two unusually long OO bonds. At the CCSD(T) level, and after extrapolation to the complete basis set limit, this isomer is predicted to be 5.37 kcal mol^–1 more stable than the one with short OO bonds, and the longest OO bond distance is expected to be close to 1.96 Å. Analysis of correlation energies indicated that the new isomers found for H₂O₆ and H₂O₇ are among the most strongly correlated molecules that can be formed with first-row atoms.     

The effect of the hydrogen fluoride chain on the aromaticity of C6H6 in the C6H6···(HF)1–4 complexes

The effect of the hydrogen fluoride chain ((HF)_n) on the aromaticity and π character of C–C bonds of C₆H₆ in the C₆H₆···(HF)_n (n = 1–4) complexes were investigated using density functional theory employing RM05 functional. It was found that the binding energy between C₆H₆ and different (HF)_n chains showed a maximum at n = 3 (C₆H₆···(HF)₃). Also, the π–hydrogen interaction (πHI) and the bifurcated fluorine interaction (BFI) increased and decreased the π character of the C–C bond of C₆H₆, respectively. In addition, the change of aromaticity of the C₆H₆ due to the interaction with the HF chains was also studied using three different aspects such as aromatic fluctuation index (FLU), average two centre index (ATI) and proton nuclear magnetic resonance (HNMR) spectrum. The most change in the aromaticity happens when the C₆H₆ interacts with (HF)₃ chain. The variation of aromaticity with the binding energy and the summation of two-body terms were investigated and very good linear correlations were observed.     

Analysis of the interactions in FCCF:(H2O) and FCCF:(H2O)2 complexes through the study of their indirect spin–spin coupling constants

A theoretical study of FCCF:(H₂O)_n complexes, with n?=?1 and 2, has been carried out by means of ab initio computational methods. Three kinds of interactions are observed in the complexes: H···π and H···F hydrogen bonds and O···FC tetrel bonds. The indirect spin–spin coupling constants have been calculated at the CCSD/aug-cc-pVTZ-J computational level. Special attention has been paid to the dependence of the different intramolecular coupling constants in FCCF on the distance between the coupled nuclei and the presence or absence of water molecules. The exceptional sensitivity shown by these coupling constants to the presence of water molecules is quite notorious and can provide information on the bonding structure of the molecule.     

Formation mechanisms and crystallographic characteristics of metastable VO2(A) nanofiber hydrothermally synthesised in V2O5–H2C2O4–H2O system

There are many similarities between VO₂(B) and VO₂(A) from crystallographic view. However, missing of VO₂(A) during the preparation of VO₂ polymorph confused many researchers. Here, the preparation of VO₂(A) was studied systemically via a hydrothermal method in V₂O₅–H₂C₂O₄–H₂O system. As a metastable phase, it can be transferred from VO₂(B) by assembling process. Usually, poly-crystal VO₂(A) nano-fibers are formed by this process. On contrast, owing to the small energy gap between meta-stable VO₂(A) and stable VO₂(R), single crystal VO₂(A) with regular shape can also be obtained by exfoliating some parts of VO₂(R) during non-equilibrium cooling process. VO₂(A) has higher phase transition temperature than stable VO₂(R). The hysteresis in this phase transition can be observed by DSC measurement and the phase transition temperature of VO₂(A) can be tuned down by tungsten doping.     

Electron paramagnetic resonance and spinlattice relaxation of Cu2+ ions in ZnSeO4·6H2O

In this paper, we present detailed studies of the EPR spectra of Cu²⁺ ions in single crystals of ZnSeO₄·6H₂O. We describe the spectrum with a rhombic spin Hamiltonian with the following parameters: g_z=2.427; g_y=2.095; g_x=2.097; A _z ⁶⁵ =138.4·10^?4 cm^?1; A _x ⁶⁵ =22.3·10^?4 cm^?1. We studied spin-lattice relaxation in the temperature range 4–300 K at the frequency v≈9.3 GHz. The measured spin-lattice relaxation rate for the orientation H∥L₄ is described well at T<5 K by a linear dependence, while at T>5 K it is described by the sum of three exponentials: $$T_1^{ - 1} = 0.27T + 3.3 \cdot 10^{\text{s}} \exp \left( {\frac{{ - 69.5}}{T}} \right) + 2.6 \cdot 10^7 \exp \left( {\frac{{ - 140}}{T}} \right) + 1.36 \cdot 10^{10} \exp \left( {\frac{{ - 735.6}}{T}} \right){\text{ sec}}^{{\text{ - 1}}} $$ .We discuss possible reasons for the exponential dependence of T ₁ ^?1 for the Raman process.     

Hypericin from St. John’s Wort (hypericum perforatum) as a novel natural fluorophore for chemiluminescence reaction of bis (2,4,6-trichlorophenyl) oxalate–H2O2–imidazole and quenching effect of some natural lipophilic hydrogen peroxide scavengers

Hypericin (HYP) molecule is a natural photoactive pigment, which plays a role as an effective photoreceptor in some plants of the Hypericum species (the most common of which is Saint John’s Wort) and some insect species. The present work deals with the first attempt to the study of peroxyoxalate chemiluminescence (POCL) system in the presense of HYP as a natural fluorophore. Reaction of bis (2,4,6-trichlorophenyl) oxalate(TCPO)–H₂O₂–imidazole can transfer energy to a HYP via formation of dioxetane through the chemically initiated electron exchange luminescence (CIEEL) mechanism and can emits a very intense red light. The effects of HYP, hydrogen peroxide, TCPO and imidazole concentrations on kinetic chemiluminescence parameters were also studied. These parameters including rise and fall rate constant for the chemiluminescence burst, theoretical and experimental maximum intensity, theoretical and experimental time to reach maximum intensity and total light yield emission were evaluated by using a pooled intermediate model for a non-linear least-squares curve fitting program, KINFIT. Moreover, quenching effect of two lipophilic natural antioxidant, Quercetin and β-carotene on it system was also investigated. The measurable concentration range of 7×10^?6 M to 7.5×10^?5 M of antioxidants were evaluated from the proper Stern–Volmer plots with satisfactory RSD% and corresponding detection limits of 2.2×10^?6 and 3.7×10^?6 for β-carotene and quercetin respectively.     

Isotope effect in chemical shifts of μ+ and H+: MuBr versus HBr and MuHO versus H2O

The isotopic difference between the diamagnetic shielding of a positive muon (⁺) in ⁺ HBr and H₂O and the analogous shielding of protons is computed from first principles in free space and in Br₂ solution, using a self-consistent cellular cluster multiple scattering method (SC-CMS) for condensed matter and for the free molecules. The isotope shift of the chemical shift _is at the ⁺ in these molecules dissolved in liquid Br₂ is evaluated with the eigenfunctions and eigenvalues obtained using Ramsey's formalism. For HBr the computed chemical shifts _is are comparable with experiment and with the calculations of Breskman and Kanofsky and of Williams, and the solvent effect has the correct sign and order of magnitude. For H₂O, _is has also the correct sign and order of magnitude when compared with ⁺SR experiments.