Behaviour of methyl red under fast atom bombardment conditions

The influence of the pH, the nature of the matrix and the presence of a surfactant on the positive- and negative-ion abundances in the molecular mass region in the fast atom bombardment (FAB) mass spectra of methyl red was investigated. A small but significant pH effect was observed which was attributed to the non- or at the most low surface-active character of the intact methyl red molecule. As expected, the more basic the solution, the less protonated molecules with respect to M⁺˙ are observed and in the negative-ion mode less [M + H]^? and more [M – H]^? ions with respect to M^?˙ were found. In contrast to neutral solutions, both acidic and basic solutions give a long-lasting stable response of all methyl red ions. For dyes with a moderately negative redox potential such as methyl red, beam-induced redox reactions seem to play a role in the ionization process, the neutral medium offering the best conditions for reduction processes. The ion intensities in the molecular mass region depend on the nature of the matrix. Protonation of the molecule has been found to be more effective in glycerol than in 3-nitrobenzyl alcohol; the former also appears to offer the best conditions for reduction processes. Anionic and cationic surfactants effectively suppress the contribution of ions from glycerol in both positive- and negative-ion spectra and generally promote the formation of analyte ions at the surface. The most important effect of the surfactant in a neutral medium seems to be the promotion of a regular transport of ions and molecules to the surface, which permits the creation of stable ion currents, instead of an unstable ion beam if the surfactant is absent. Moreover, when the surfactant is present an increase of the sample ion abundances is observed. Redox reactions involving molecules and molecular ions and also molecules and preformed ions in the solution, brought to the surface by micelles, have been proposed to give some contribution for the small but significant enhanced abundance of [M + nH]⁺ (n > 1) ions with respect to [M + H]⁺ ions, in the presence of a surfactant. The results have been rationalized in terms of the surface phenomena while the important role of surfactants for obtaining better FAB mass spectra is emphasized.     

Stereospecific adduct ion formation in the chemical ionization mass spectra of E- and Z-1,2,3-triaryl-2-propen-1-ones

Stereospecific adduct ion formation has been observed in the chemical ionization mass spectra (positive and negative) of certain E- and Z-1,2,3-triaryl-2-propen-1-ones. The Z isomers are found to give higher relative abundances of adduct ions than the E isomers. This has been interpreted in terms of the differences in the proton affinities of the isomers originating from their different degrees of enone resonance. Halide ion (CI^? and Br^?) attachment spectra of these compounds also show stereochemical differences in the relative abundances of [M]^?˙ and [M+halide]^? ions, though the effect is not as pronounced as in the case of the positive ion spectra.     

Negative and positive secondary ion mass spectra of organic acids

Organic compounds can be ionized by sputtering the solid sample. The resulting negative and positive secondary ions provide mass spectra which characterize both the molecular weights and the structures of the compounds. Ionization occurs either by direct ejection of charged species from the solid into vacuum or by electron or proton transfer. The sputtered secondary ions dissociate unimolecularly to give fragment ions. These reactions are identical to those which occur when the secondary ions are independently generated by chemical ionization, selected by mass and dissociated in a high energy gas phase collision. The negative ion SIMS spectra show molecular ions (M^?.) or (M-H)^? ions as the dominant high mass species together with fragments due to decarboxylation, dehydration and losses of other simple molecules. Stronger acids show larger (M-H)^?/M^?.abundance ratios. The positive ion spectra are complementary and also useful in characterizing molecular structures. Attachment of cations to organic molecules (cationization) occurs much more readily than anion attachment and this makes negative SIMS spectra simpler than these positive ion counterparts.     

Investigation of dialkyl tartrate molecular recognition in cluster ions by Fourier transform mass spectrometry: a comparison of chirality effects in gas and liquid phases

Electrospray ionization of equimolar solutions of S-dimethyl tartrate and R-d6-dimethyl tartrate in methanol/water/acetic acid/salt solutions was utilized to investigate molecular recognition processes in solution. Pronounced chirality effects previously reported for formation of the protonated dimer by ion molecule reactions in the gas phase are quantitatively reproduced in experiments which sample solution phase protonated dimers. Ab initio quantum calculations demonstrate that hydrogen bonds in the protonated cluster are responsible for molecular recognition and that Li⁺ bound clusters, which do not exhibit chiral recognition, are primarily bound by electrostatic forces. In contrast with gas phase studies of alkali and ammonium ion core dimers of dimethyl tartrate—which show no chirality effects—ions electrosprayed from solutions containing trace amounts of these ions show pronounced chirality. With increasing salt concentration the apparent chirality effect disappears and a statistical distribution identical to that found for the gas phase is obtained. These observations are rationalized by a kinetic model that considers the displacement of protons by alkali ions in the final stages of desolvation of microdroplets formed in the electrospray process.     

Detection of fast molecular beams by ion ejection from a surface

When superthermal beams of non-alkali-containing molecules strike a pre-treated, oxidized Re filament at 1200 K, positive ions (particularly those of alkali contaminants in the filament) are ejected from the surface, rendering the neutral beams detectable. Within the energy range studied (a few eV) the efficiency of ion production increases approximately exponentially with the translational energy of the incident neutral molecule. Maximum ionization efficiencies were in the range 0.1–10%, for compounds with ionization potentials (IP's) ? 10 eV. For those of IP > 10 eV, ionization efficiencies were unobservably low (? 10^?6), as were yields of negative ions (or electrons) for any compound.     

Fast atom bombardment mass spectrometry of alkali metal fluorides and chlorides; a comparison of the solid salt and glycerol matrix spectra

The Fast Atom Bombardment (FAB) mass spectra of the alkali metal chlorides (Na, K, Cs) and fluorides (Na, K, Rb, Cs) were obtained from solids and a glycerol matrix, using a fast atom bombardment source. From solids the fluorides exhibited an ion abundance enhancement of the well-known [M(MF)₄]⁺ cluster, which decreased with increasing cation size. A gradual decrease in the n=4 enhancement was observed as the salt was diluted with glycerol. In the chlorides only sodium chloride showed the n=4 relative enhancement. The mass spectra of the salts from a glycerol matrix at molar ratios of 1:1 to 1:10 showed that the spectra of the 1:1 solutions were similar to those from the solids, while glycerol adducts were found to increase with increasing glycerol concentration. A [M(MX)_n(gly)]⁺ species that featured successive losses of HX was observed. It has not been established whether HX losses take place in solution, in the surface/vacuum interface and/or whether gas phase reactions might be responsible for the observation of the [M(MX)_n(gly)–y HX]^? species in the mass spectra of the MX/glycerol system.     

Study on ion formation in electrospray droplet impact secondary ion mass spectrometry

A new type of cluster secondary ion mass spectrometry (SIMS), named electrospray droplet impact (EDI), has been developed in our laboratory. In general, rather strong negative ions as well as positive ions can be generated by EDI compared with conventional SIMS. In this work, various aspects of ion formation in EDI are investigated. The Brønsted bases (proton acceptor) and acids (proton donor) mixed in the analyte samples enhanced the signal intensities of deprotonated molecules (negative ions) and protonated molecules (positive ions), respectively, for analytes. This suggests the occurrence of heterogeneous proton transfer reactions (i.e. M + M′ → [M+H]⁺ + [M′? H]^?) in the shockwave‐heated selvedge of the colliding interface between the water droplet and the solid sample deposited on the metal substrate. EDI‐SIMS shows a remarkable tolerance to the large excess of salts present in samples. The mechanism for desorption/ionization in EDI is much simpler than those for MALDI and SIMS because only very thin sample layers take part in the shockwave‐heated selvedge and complicated higher‐order reactions are largely suppressed. Copyright © 2007 John Wiley & Sons, Ltd.     

Selective reagents in chemical ionization mass spectrometry: Tetramethylsilane with aliphatic alcohols

Mixtures of tetramethylsilane and helium have been found to form [M + 73]⁺ adducts, hydrated trimethylsilyl ions and alkyl ions with aliphatic alcohols. The adduct ions were found to be formed by displacement of water from the hydrated trimethylsilyl ion. Ratios of the abundances of the adduct ions to the hydrated trimethylsilyl ion can be used to differentiate among primary, secondary and tertiary alcohols. Sensitivities for a number of alcohols with the tetramethylsilane/helium chemical ionization reagent system are approximately equal.     

Ejection of Cluster Ions from a Liquid Beam of an Aniline-Propanol Solution Following Laser Photoionization

A simple technique of preparing a continuous laminar liquid flow in vacuum (liquid beam) was developed and combined with multiphoton ionization and a time-of-flight mass spectrometer. This technique was applied to the study on resonance photoionization of an aniline (AN)-propanol (PrOH) solution (0.1 – 0.3 M). Binary cluster ions of aniline and propanol, AN⁺(PrOH)_n (n ≤ 1), and protonated propanol cluster ions, H⁺(PrOH)_n (n ≤ 1), were observed as product ions in the gas phase. The relative intensities of AN⁺PrOH and those of H⁺(PrOH)₂ were measured as functions of the excitation laser power and the concentration of aniline in the propanol solution. The dependences of the ion intensities on the laser power and the AN concentration are explained in terms of a Coulomb ejection model, where the ions are ejected from the surface by Coulomb repulsion exerted from neighboring ions. It is also concluded that H⁺(PrOH)_n is produced by a proton transfer reaction from an aniline ion to solvent molecules in the solution.     

Determination of orders of relative alkali metal ion affinities of crown ethers and acyclic analogs by the kinetic method

Ladders of relative alkali ion affinities of crown ethers and acyclic analogs were constructed by using the kinetic method. The adducts consisting of two different ethers bound by an alkali metal ion, (M₁ + Cat + M₂)⁺, were formed by using fast atom bombardment ionization to desorb the crown ethers and alkali metal ions, then collisionally activated to induce dissociation to (M₁ + Cat)⁺ and (M₂ + Cat)⁺ ions. Based on the relative abundances of the cationized ethers formed, orders of relative alkali ion affinities were assigned. The crown ethers showed higher affinities for specific sizes of metal ions, and this was attributed in part to the optimal spatial fit concept. Size selectivities were more pronounced for the smaller alkali metal ions such as Li⁺, Na⁺, and K⁺ than the larger ions such as Cs⁺ and Rb⁺. In general, the cyclic ethers exhibited greater alkali metal ion affinities than the corresponding acyclic analogs, although these effects were less dramatic as the size of the alkali metal ion increased.     

Electrospray mass spectra of protein cations formed in basic solutions

The electrospray mass spectra of gramicidin S cations that originated from 0.2 M solutions of 18 nitrogen-containing bases were examined. The relative abundances of the [M + 2H]²⁺ to the [M + H]⁺ ion were found to correlate not with the solution pH but with the proton affinities of the bases. It is postulated that some of the [M + 2H]²⁺ and the [M + H]⁺ ions exist as adducts with the nitrogen bases in solution, these adducts being desorbed into the gas phase during electrospray and dissociated in the lens region via collision-induced dissociations to yield apparent proton attachment spectra. Some of these adducts were observed under nominally zero collision energy conditions.     

Cluster ion structures formed by positive and negative chemical ionization of lactic and other hydroxyacids

Both positive ion and negative ion chemical ionization mass spectra of hydroxycarboxylic acids (hydroxyethanoic acid, 3-hydroxypropanic acid, 2-hydroxypropanoic acid and 1-phenyl-1-hydroxyethanoic acid) show intense oligomeric ions when the samples are evaporated into a chemical ionization source. The observation of oligomeric anionic and cationic species is unusual, and the parallel behavior observed between the positive and negative ion mass spectra is striking. These results are explicable in terms of evaporation of oligomers and their dehydration products from the hot probe, although gas phase clustering reactions of singly charged ions are not excluded. Hydrogen bonding and dehydration provide bonding within each cluster. The structures of the ions have been confirmed by recording the collision induced dissociations of individual cluster ions via their mass analyzed ion kinetic energy spectra. Temperature dependence of the chemical ionization mass spectra provides a method for distinguishing hydrogen bonding from covalent bonding and gives further structural information on the cluster ions.     

Negative ion production from peptides and proteins by matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry

Negative ion production from peptides and proteins was investigated by matrix‐assisted laser desorption/ionization time‐of‐flight (MALDI‐TOF) mass spectrometry. Although most research on peptide and protein identification with ionization by MALDI has involved the detection of positive ions, for some acidic peptides protonated molecules are not easily formed because the side chains of acidic residues are more likely to lose a proton and form a deprotonated species. After investigating more than 30 peptides and proteins in both positive and negative ion modes, [M–H]⁻ ions were detected in the negative ion mode for all peptides and proteins although the matrix used was 2,5‐dihydroxybenzoic acid (DHB), which is a good proton donor and favors the positive ion mode production of [M+H]⁺ ions. Even for highly basic peptides without an acidic site, such as myosin kinase inhibiting peptide and substance P, good negative ion signals were observed. Conversely, gastrin I (1‐14), a peptide without a highly basic site, will form positive ions. In addition, spectra obtained in the negative ion mode are usually cleaner due to absence of alkali metal adducts. This can be useful during precursor ion isolation for MS/MS studies. Copyright © 2008 John Wiley & Sons, Ltd.     

Direct exposure chemical ionization mass spectra of explosives

Mass spectra of explosives, including TNT, tetryl, nitroglycerin, PETN and RDX have been recorded by direct exposure chemical ionization with isobutane as reagent at source temperatures of 50–100°C. The mass spectra contain major [MH]⁺ ions, adduct ions and some fragment ions. The configuration of the relative abundances of these ions has been found to be a function of temperature and source pressure. Maximum [MH]⁺ ion abundance has been obtained at source pressures much lower than normal chemical ionization pressures.     

Gas-phase ion-molecule bimolecular and clustering reactions in dilute solutions of acetonitrile in xenon,krypton, argon,neon and helium

Gas-phase bimolecular and clustering reactions of acetonitrile in Xe, Kr, Ar, Ne and He were studied at high chemical ionization pressures in the new coaxial ion source at Auburn. With electron energies near the ionization threshold, the mass spectra are exceedingly simple and are comprised of [CH₄CH]⁺ and clusters of [CH₄CN]⁺ with various ligands such as H₂O and CH₃CN. At higher electron energies many other peaks appear. The intensities of the new peaks depend upon the ionization potential of the charge transfer gas, the ionizing electron energy and the ion source conditions, and are due to reactions of fragment ions. Residence time distributions at electron energies above the ionization threshold (∼ 30 eV) demonstrate that two molecular structures are present in the ion beam at m/z 42, one presumably is protonated acetonitrile ([CH₃CNH]⁺) while the evidence indicates that the second species does not contain acidic hydrogens. With ionizing electron energies near threshold (∼ 10. 5 eV) only one structure is observed. Studies with electron energies near the ionization threshold under high-pressure chemical ionization conditions result in greatly simplified mass spectra and are possible only because of the coaxial geometry of the ion source.     

Formation of M+. ions under matrix fast atom bombardment conditions: Does charge exchange reaction occur?

The formation of molecular ions, M^+., under fast atom bombardment (FAB) conditions using a liquid matrix was examined by using a new type of synthesized compounds in which preferential M^+. peaks appear in their FAB spectra. The FAB spectra were compared with the corresponding mass spectra obtained by the electron impact (EI) ionization, chemical ionization (CI) and charge-exchange ionization (CEI) methods. All of the spectra showed preferential peaks of M^+. ion and a characteristic intense fragment ion peak originating from a β-fission. The FAB spectra were similar in the fragment ions appearing in the EI spectra and were very similar in the fragmentation pattern to the CEI spectra using Ar^+. and Xe^+. as the reagent ions. Further, the FAB spectra did not show any doubly charged ion peaks, while the 70 eV EI spectra showed the peaks of doubly charged molecular and/or fragment ions. The isobutane CI spectra of the synthesized compounds suggested that the formation of M^+. ions occurred through the CE reaction with isobutane ion, C₄H₁₀^+., and the CI spectra showed a marked intense fragment ion peak originating from the β-fission which seemed to occur characteristically in CEI processes. The results obtained suggested that the formation of M^+. ions under matrix FAB conditions occurred mainly by CE reactions between the analytes M and matrix molecular ions B^+. and/or fragment ions b^+..     

Evidence that gas-phase ion-molecule reactions are responsible for the behaviour of crown ethers under fast atom bombardment conditions

The fast atom bombardment mass spectrometry of some crown ethers shows the formation of both [M + H]⁺ and [M ? H]⁺ ions, paralleling behaviour already observed using electron impact ionization. The study of these oily samples with and without a glycerol matrix, trifluoroacetic acid or alkali metal salts, suggests that the ionization process does not occur in the condensed phase, but in the selvedge region by gas-phase ion-molecule reactions in accordance with the ‘gas-phase explosion model’. Positive-ion chemical ionization experiments support this proposal.     

Electron ionization and chemical ionization mass spectra of pyridinium and isoquinolinium ylides

Electron ionization (EI) spectra and both positive and negative chemical ionization (CI) spectra have been obtained for four isoquinolinium ylides and two pyridinium ylides. Electron transfer reactions dominate the CI mass specra. The base peak in negative chemical ionization is the [M]^?· ion, formed by electron capture. In the positive methane CI spectra the molecular ion, [M]^+·, is relatively more intense than [MH]⁺ showing electron transfer to be the main positive ionization process. In the positive ammonia CI spectra, proton transfer to give [MH]⁺ is the main ionization process, but electron transfer is also observed. The EI spectra show fragmentations in which the aromatic nitrogen moiety retains the charge and fragmentation is by loss of radicals or small neutral molecules from the side-chains. Radical driven reactions are proposed to explain these spectra.     

Chemical ionization mass spectrometry: Oligomerization reactions in tight ion sources

Association of carbonyl compounds with protons to give cluster ions can be observed in conventional chemical ionization mass spectrometry. The variation of the relative ion currents of proton bound ‘dimers’ formed with acetone and methylethyl ketone have been examined as a function of ion source partial pressures. Multiple ion/molecule reactions with N-methylol derivatives of amides and carbamates and repetitive losses of water give protonated oligomeric species. Ions having m/z values as large as 625 [M₆H? 5H₂O]⁺ have been detected in the chemical ionization spectrum of N-hydroxymethylurethane (M).     

Reactions of poly(ethylene glycol) cations with iodide and perfluorocarbon anions

Multiply charged poly(ethylene glycol) ions of the form (M+nNa) ⁿ⁺ derived from electrospray ionization have been subjected to reactions with negative ions in the quadrupole ion trap. Mixtures of multiply charged positive ions ranging in average mass from about 2000 to about 14,000 Da were observed to react with perfluorocarbon anions by either proton transfer or fluoride transfer. Iodide anions reacted with the same positive ions by attachment. In no case was fragmentation of the polymer ion observed. In all cases, the multiply charged positive ion charge states could be readily reduced to +1, thereby eliminating the charge state overlap observed in the normal electrospray mass spectrum. With all three reaction mechanisms, however, the +1 product ions were comprised of mixtures of products with varying numbers of sodium ions, and in the case of iodide attachment and fluoride transfer, varying numbers of halogen anions. These reactions shift the mass distributions to higher masses and broaden the distributions. The extents to which these effects occur are functions of the magnitudes of the initial charges and the width of the initial charge state distributions. Care must be taken in deriving information about the polymer molecular weight distribution from the singly charged product ions arising from these ion/ion reactions. The cluster ions containing iodide were shown to be intermediates in sodium ion transfer. Dissociation of the adduct ions can therefore lead to a +1 product ion population that is comprised predominantly of M+Na⁺ ions. However, a strategy based on the dissociation of the iodide cluster ions is limited by difficulties in dissociating high mass-to-charge ions in the quadrupole ion trap.