A quick and easy method to identify bacteria by matrix‐assisted laser desorption/ionisation time‐of‐flight mass spectrometry

Concerns with water quality have increased in recent years, in part due to the more frequent contamination of water by pathogens like E. coli and L. pneumophila. Current methods for the typing of bacteria in water samples are based on culture of samples on specific media. These techniques are time‐consuming, subject to the impact of interferents and do not totally meet all the requirements of prevention. There is a need for accurate and rapid identification of these microorganisms. This report deals with the detection of bacteria, more precisely of Legionella spp., and the development of an analytical strategy for a rapid and unambiguous identification of these pathogens in water from diverse origins. Therefore, a protein mass mapping using matrix‐assisted laser desorption/ionisation mass spectrometry (MALDI MS) of whole bacteria combined with a home‐made database of bacteria spectra is applied. A large variety of different bacteria and microorganisms is used to approach the actual composition of samples with numerous interferents. The objective is to propose a universal method for sampling preparation before MALDI MS analysis and optimised spectrometric conditions for reproducible intense peaks. Several experimental factors known to influence signal quality such as time and media of culture have been studied. The proposed method gives promising results for a sure differentiation of Legionella species and subspecies and a rapid identification of bacteria which are the most dangerous or difficult to eradicate. This method is easy to perform with an excellent reproducibility. The analytical protocol and the corresponding database were validated on samples from different origins (cooling tower, plumbing hot water). Copyright © 2010 John Wiley & Sons, Ltd.     

Raman spectroscopic study of bacterial endospores

Endospores and endospore-forming bacteria were studied by Raman spectroscopy. Raman spectra were recorded from Bacillus licheniformis LMG 7634 at different steps during growth and spore formation, and from spore suspensions obtained from diverse Bacillus and Paenibacillus strains cultured in different conditions (growth media, temperature, peroxide treatment). Raman bands of calcium dipicolinate and amino acids such as phenylalanine and tyrosine are more intense in the spectra of sporulating bacteria compared with those of bacteria from earlier phases of growth. Raman spectroscopy can thus be used to detect sporulation of cells by a characteristic band at 1,018 cm^–1 from calcium dipicolinate. The increase in amino acids could possibly be explained by the formation of small acid-soluble proteins that saturate the endospore DNA. Large variations in Raman spectra of endospore suspensions of different strains or different culturing conditions were observed. Next to calcium dipicolinate, tyrosine and phenylalanine, band differences at 527 and 638 cm^–1 were observed in the spectra of some of the B. sporothermodurans spore suspensions. These bands were assigned to the incorporation of cysteine residues in spore coat proteins. In conclusion, Raman spectroscopy is a fast technique to provide useful information about several spore components. Figure A difference spectrum between Raman spectra of B. licheniformis LMG 7634 cultured for 6 days and 1 day, together with the reference Raman spectrum of calcium dipicolinate     

Detection of bacteria by surface-enhanced Raman spectroscopy

The detection and identification of dilute bacterial samples by surface-enhanced Raman spectroscopy has been explored by mixing aqueous suspensions of bacteria with a suspension of nanocolloidal silver particles. An estimate of the detection limit of E. coli was obtained by varying the concentration of bacteria. By correcting the Raman spectra for the broad librational OH band of water, reproducible spectra were obtained for E. coli concentrations as low as approximately 10³ cfu/mL. To aid in the assignment of Raman bands, spectra for E. coli in D₂O are also reported. Figure Light scattering apparatus used to detect bacteria     

Towards a receptor-free immobilization and SERS detection of urinary tract infections causative pathogens

Based on molecular-specific surface-enhanced Raman scattering (SERS) spectroscopy we were able to discriminate between rough and smooth strains of Escherichia coli and Proteus mirabilis bacteria. For this purpose, bacteria have been immobilized through electrostatic forces by inducing a positive charge on the glass slide. This way, SERS spectra on bacterial biomass and also on single bacteria could be recorded in less than 2 h, by using concentrated silver nanoparticles as SERS-active substrate. Single-bacterium SERS spectral fingerprints showed to be sensitive to the presence of the O-antigen at strain level and to the microorganisms growth phase. By using principal component analysis (PCA) on the SERS spectra recorded from E. coli and P. mirabilis, these two uropathogens could be fairly discriminated.     

Assessment of two isolation techniques for bacteria in milk towards their compatibility with Raman spectroscopy

The identification of single microorganism in food samples by conventional plating techniques or molecular genetic methods requires a time consuming enrichment step. Raman spectroscopy in combination with a suitable extraction method however offers the possibility to rapidly identify bacteria on a single cell level. Here we evaluate the two well-known bacteria extraction methods from milk: "buoyant density centrifugation" and "enzymatic milk clearing" towards their recovery efficiency and their compatibility with Raman spectroscopy for a rapid identification of microorganisms in milk. The achieved recovery yields are slightly better compared to those which are already applied for food investigations, where a loss of one order of magnitude is usually reached. For example, buoyant density centrifugation allows collecting up to 35% of the milk-spiked microorganisms. To prove the suitability of the isolation techniques for use in combination with the spectroscopic approach, a small Raman database has been created by recording Raman spectra of well-known contaminants in dairy products. Two subspecies of Escherichia coli and three different Pseudomonas species, which were inoculated to UHT (ultra-high-temperature processed) milk and afterwards extracted by the two techniques mentioned above, were analysed. At a first glance, grave spectral artefacts caused by the matrix itself or especially by the extraction techniques were not obvious. But via chemometric analysis, it could be shown that these factors noticeably influence the identification rates: while the samples prepared via milk clearing did not provide sufficient identification results, buoyant density centrifugation allows an identification of the investigated species with an overall accuracy of 91% in combination with linear discriminant analysis.     

Interaction of bacteria and ion‐exchange particles and its potential in separation for matrix‐assisted laser desorption/ionization mass spectrometric identification of bacteria in water

Identification of microbial contaminants in drinking water is a challenge to matrix‐assisted laser desorption/ionization mass spectrometry (MALDI‐MS) due to low levels of microorganisms in fresh water. To avoid the time‐consuming culture step of obtaining enough microbial cells for subsequent MALDI‐MS analysis, a combination of membrane filtration and nanoparticles‐ or microparticles‐based magnetic separation is a fast and efficient approach. In this work, the interaction of bacteria and fluidMAG‐PAA, a cation‐exchange superparamagnetic nanomaterial, was investigated by MALDI‐MS analysis and transmission electron microscopy. FluidMAG‐PAA selectively captured cells of Salmonella, Bacillus, Enterococcus and Staphylococcus aureus. This capture was attributed to the aggregation of negatively charged nanoparticles on bacterial cell regional surfaces that bear positive charges. Three types of non‐porous silica‐encapsulated anion‐exchange magnetic microparticles (SiMAG‐Q, SiMAG‐PEI, SiMAG‐DEAE) were capable of concentrating a variety of bacteria, and were compared with silica‐free, smaller fluidMAG particles. Salmonella, Escherichia coli, Enterococcus and other bacteria spiked in aqueous solutions, tap water and reservoir water were separated and concentrated by membrane filtration and magnetic separation based on these ion‐exchange magnetic materials, and then characterized by whole cell MALDI‐MS. By comparing with the mass spectra of the isolates and pure cells, bacteria in fresh water can be rapidly detected at 1 × 10³ colony‐forming units (cfu)/mL. Copyright © 2009 John Wiley & Sons, Ltd.     

Vibrational and microbiological study on alkaline metal picolinates and o-iodobenzoates

FT–IR and Raman experimental data were assigned to appropriate bond vibrations and used to compare the different electronic charge distributions in the aromatic rings and carboxylic anions of various lithium, sodium, potassium, rubidium and caesium o-iodobenzoates and picolinates. Then principal component analysis (PCA) was applied in order to attempt to distinguish the biological activities of these compounds according to selected band wavenumbers. The growth of the bacteria Escherichia coli and Bacillus subtilis and the yeasts Saccharomyces cerevisiae and Hansenula anomala under optimal growth conditions were measured after 24 hours of incubation by the classical plate method. The influence of the picolinates and o-iodobenzoates on the growth of these microorganisms, again after 24 hours of incubation, was also measured and compared to the effect of sodium benzoate, which was used as a reference material. In general, the o-iodobenzoates exhibited more activity against the microorganisms than the picolinates. A statistically significant linear correlation between the spectral data and the degree of influence of a given compound on microorganism growth was established. The correlation coefficients for the o-iodobenzoates were 0.696, –0.628, 0.693 and 0.755 for E. coli, B. subtilis, H. anomala and S. cerevisiae, respectively, and for the picolinates they were 0.818, 0.826, 0.821 and 0.877 for E. coli, B. subtilis, H. anomala and S. cerevisiae, respectively. Therefore, IR spectroscopy is shown to be a rapid and reliable analytical tool for preliminary estimation of the antimicrobial properties of newly synthesized compounds, that can be applied before microbial performance tests.     

Studies on Antimicrobial Evaluation of Some 1-((1-(1H-Benzo[d]imidazol-2-yl)ethylidene)amino)-6-((arylidene)amino)-2-oxo-4-phenyl-1, 2-dihydropyridine-3,5-dicarbonitriles

A new series of 1-((1-(1H-benzo[d]imidazol-2-yl)ethylidene)amino)-6-((arylidene)amino)-2-oxo-4-phenyl-1,2-dihydropyridine-3,5-dicarbonitriles (4a–o) have been synthesized for the development of antimicrobial agents. Newly synthesized compounds were evaluated for their in vitro antibacterial activity against Gram-positive bacteria (Pseudomonas aeruginosa, Streptococcus pyogenes), Gram-negative bacteria (Escherichia coli, Staphylococcus aureus), and antifungal activity (Candida albicans, Aspergillus niger, Aspergillus clavatus). These compounds were characterized by infrared, ¹H NMR, ¹³C NMR, and mass spectra. The synthesized compounds 4b, 4e, 4 h, and 4k showed potent antimicrobial activity against tested microorganisms.     

NEAR-INFRARED-FT-RAMAN STUDY OF AGGREGATION OF BACTERIOCHLOROPHYLL c IN WHOLE LIVING Chlorobium limicola

Near-infrared excited Fourier-transform Raman spectra have been measured for whole living Chlorobium limicola f. thiosulfatophilum to explore in situ structure of bacteriochlorophyll c (BChl-c). The spectra, whose Raman bands are preresonance enhanced via a Qy band of BChl-c, did not contain contributions from the major components of bacteria such as proteins and lipids. Therefore, the spectra provide selective structural information about BChl-c in the chlorosomes in a totally nondestructive manner. A marker band, appearing at 1605 cm-1 for the coordination number of the Mg atom, shows that BChl-c in the chlorosomes is five coordinate. The Raman spectrum of living bacteria closely resembles that of BChl-c in water-saturated carbon tetrachloride (w-std CC14) where it is comprised of dimer, tetramer and polymer spectra. However, a band assigned to a C=O stretching mode of the 131-keto group is identified only at 1641 cm-1. A band arising from the free keto carbonyl group, which appears in the spectrum of BChl-c in w-std CC14, is not observed in the spectra of bacteria. These observations suggest that BChl-c in the chlorosomes forms mostly coordinate polymeric species whose structure is very similar to that of BChl-c in w-std CC14.     

The influence of intracellular storage material on bacterial identification by means of Raman spectroscopy

Previous studies dealing with bacterial identification by means of Raman spectroscopy have demonstrated that micro-Raman is a suitable technique for single-cell microbial identification. Raman spectra yield fingerprint-like information about all chemical components within one cell, and combined with multivariate methods, differentiation down to species or even strain level is possible. Many microorganisms may accumulate high amounts of polyhydroxyalkanoates (PHA) as carbon and energy storage materials within the cell and the Raman bands of PHA might impede the identification and differentiation of cells. To date, the identification by means of Raman spectroscopy have never been tested on bacteria which had accumulated PHA. Therefore, the aim of this study is to investigate the effect of intracellular polymer accumulation on the bacterial identification rate. Combining fluorescence imaging and Raman spectroscopy, we identified polyhydroxybutyrate (PHB) as a storage polymer accumulating in the investigated cells. The amount of energy storage material present within the cells was dependent on the physiological status of the microorganisms and strongly influenced the identification results. Bacteria in the stationary phase formed granules of crystalline PHB, which obstructed the Raman spectroscopic identification of bacterial species. The Raman spectra of bacteria in the exponential phase were dominated by signals from the storage material. However, the bands from proteins, lipids, and nucleic acids were not completely obscured by signals from PHB. Cells growing under either oxic or anoxic conditions could also be differentiated, suggesting that changes in Raman spectra can be interpreted as an indicator of different metabolic pathways. Although the presence of PHB induced severe changes in the Raman spectra, our results suggest that Raman spectroscopy can be successfully used for identification as long as the bacteria are not in the stationary phase.     

Applications of FT Raman Spectroscopy and Micro Spectroscopy Characterizing Cellulose and Cellulosic Biomaterials

FT Raman spectroscopy and micro spectroscopy were used for the investigation of cellulose, cellulose derivatives and cellulosic plant fibres. Lattice structures of cellulose, polymorphic modifications I and II, as well as amorphous structure, were clearly identified by means of FT Raman vibrational spectra. Chemometric models were developed utilizing univariate calibration as well as methods of multivariate data analyses of FT Raman spectral data for the fast prediction of cellulose properties. Cellulose properties like the degree of crystallinity Xc_Raman, the degree of substitution DS_CMC, DS_AC and cellulose reactivity were determined. In situ/ in vivo FT Raman micro spectroscopy was used for the characterization of cellulose structures of flax and hemp fibres. Orientational and stress dependent FT Raman experiments were carried out.     

Zeolite‐Supported One‐Pot Synthesis of Bis‐azetidinones under Microwave Irradiation

In an attempt to synthesize antibacterial agents effective against gram‐positive and gram‐negative bacteria, the efficient synthesis of novel bis‐azetidinones ( 3a–j ) has been established. Thus, cycloaddition reaction of substituted bis‐imines with chloroacetylchloride under microwave irradiation in the presence of zeolite yielded bis‐azetidinones ( 3a–j ). Structures of the synthesized compounds have been elucidated on the basis of their elemental analysis and spectral data (IR, ¹H‐NMR, ¹³C‐NMR, and mass spectra). The synthesized bis‐azetidinones were screened for their antibacterial activity against five microorganisms: Bacillus subtilis, Proteus vulgaris, Staphylococcus aureus, Klebsiella pneumoniae, and Escherichia coli. They were found to exhibit good to moderate antibacterial activity.     

Development of a Fiber Optic Probe to Measure NIR Raman Spectra of Cervical Tissue In Vivo

The goal of this study was to develop a compact fiber optic probe to measure near infrared Raman spectra of human cervical tissue in vivo for the clinical diagnosis of cervical precancers. A Raman spectrometer and fiber optic probe were designed, constructed and tested. The probe was first tested using standards with known Raman spectra, and then the probe was used to acquire Raman spectra from normal and precancerous cervical tissue in vivo. Raman spectra of cervical tissue could be acquired in vivo in 90 s using incident powers comparable to the threshold limit values for laser exposure of the skin. Although some silica signal obscured tissue Raman bands below 900 cm^-1, Raman features from cervical tissue could clearly be discerned with an acceptable signal-to-noise ratio above 900 cm^-1. The success of the Raman probe described here indicates that near infrared Raman spectra can be measured in vivo from cervical tissues. Increasing the power of the excitation source could reduce the integration time to below 20 s.     

A study of Docetaxel-induced effects in MCF-7 cells by means of Raman microspectroscopy

Chemotherapies feature a low success rate of about 25%, and therefore, the choice of the most effective cytostatic drug for the individual patient and monitoring the efficiency of an ongoing chemotherapy are important steps towards personalized therapy. Thereby, an objective method able to differentiate between treated and untreated cancer cells would be essential. In this study, we provide molecular insights into Docetaxel-induced effects in MCF-7 cells, as a model system for adenocarcinoma, by means of Raman microspectroscopy combined with powerful chemometric methods. The analysis of the Raman data is divided into two steps. In the first part, the morphology of cell organelles, e.g. the cell nucleus has been visualized by analysing the Raman spectra with k-means cluster analysis and artificial neural networks and compared to the histopathologic gold standard method hematoxylin and eosin staining. This comparison showed that Raman microscopy is capable of displaying the cell morphology; however, this is in contrast to hematoxylin and eosin staining label free and can therefore be applied potentially in vivo. Because Docetaxel is a drug acting within the cell nucleus, Raman spectra originating from the cell nucleus region were further investigated in a next step. Thereby we were able to differentiate treated from untreated MCF-7 cells and to quantify the cell–drug response by utilizing linear discriminant analysis models.     

Complementary Approaches to Imaging Subcellular Lipid Architectures in Live Bacteria Using Phosphorescent Iridium Complexes and Raman Spectroscopy

A family of three neutral iridium(III) tetrazolato complexes are investigated as bacterial imaging agents. The complexes offer a facile tuning of the emission colour from green (520 nm) to red (600 nm) in aqueous media, while keeping the excitation wavelength unchanged. The three complexes do not inhibit the bacterial growth of Bacillus Cereus, used as a model in this study, and exhibit extremely fast cellular uptake. After a minute incubation time, the nontoxic complexes show subcellular localisation in spherical structures identified as lipid vacuoles. Confocal Raman imaging has been exploited for the first time on live bacteria, to provide direct and label-free mapping of the lipid-enriched organelles within B. cereus, complementing the use of luminescent probes. Examination of the Raman spectra not only confirmed the presence of lipophilic inclusions in B. cereus but offered additional information about their chemical composition, suggesting that the lipid vacuoles may contain polyhydroxybutyrate (PHB).     

A Vibrational Raman Optical Activity Study of 1,1′‐Binaphthyl Derivatives

The Raman polarized and vibrational Raman optical activity (VROA) backward spectra are simulated for a series of 2,2′‐substituted 1,1′‐binaphthyl compounds presenting a variety of torsion angles between the two naphthalene rings. The substitution prevents free rotation along this torsion angle and the chirality of these compounds is thus called atropisomerism. However, the rotation is not completely frozen so that two different conformations, namely cisoid and transoid, are found and their Raman and VROA signatures are studied. As expected, the Raman spectra are not very sensitive whereas the VROA spectra present more complex patterns, which evolve as a function of the torsion angle between the two naphthalene groups. In particular, our analysis shows that some modes can be used as a probe for the determination of the torsion angle of these molecules in solution. The contributions of both invariants to the VROA backward intensity are also assessed.     

Recent studies on advance spectroscopic techniques for the identification of microorganisms: A review

The continuous development of resistance to antibiotic drugs by microorganisms causes high mortality and morbidity. Pathogens with distinct features and biochemical abilities make them destructive to human health. Therefore, early identification of the pathogen is of substantial importance for quick ailments and healthcare outcomes. Several phenotype methods are used for the identification and resistance determination but most of the conventional procedures are time-consuming, costly, and give qualitative results. Recently, great focus has been made on the utilization of advanced techniques for microbial identification. This review is focused on the research studies performed in the last five years for the identification of microorganisms particularly, bacteria using advanced spectroscopic techniques including mass spectrometry (MS), infrared (IR) spectroscopy, Raman spectroscopy (RS), and nuclear magnetic resonance (NMR) spectroscopy. Among all the techniques, MS techniques, particularly MALDI-TOF/MS have been widely utilized for microbial identification. A total of 44 bacteria i.e., 6 Staphylococcus spp., 3 Enterococcus spp., 6 Bacillus spp., 4 Streptococcus spp., 6 Salmonella spp., and one from each genus including Escherichia, Acinetobacter, Pseudomonas, Proteus, Clostridioides, Candida, Brucella, Burkholderia, Francisella, Yersinia, Moraxella, Vibrio, Shigella, Serratia, Citrobacter, and Haemophilus (spp.) were discussed in the review for their identification using the above-mentioned techniques. Among all the identified microorganisms, 21% of studies have been conducted for the identification of E. coli, 14% for S. aureus followed by 37% for other microorganisms.     

Microwave-assisted synthesis of borneol esters and their antimicrobial activity

Seventeen borneol esters (1–17) were synthesised by conventional and microwave-assisted methodology using DIC/DMAP, and seven are described for the first time (8, 9, 10, 12, 13, 16 and 17). The microwave-assisted methodology was carried out without use of solvents, displayed short reaction times, and showed equal or higher yields for all the long-chain esters and three aromatic compounds (11, 12 and 14) when compared to the conventional approach. All the borneol esters were evaluated against the bacteria Streptococcus sanguinis, Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa and the fungus Candida albicans. Compounds 12, 13 and 14 displayed promising antibacterial activity with a MIC equal to ampicilin (62.5 mg mL^?1) for some microorganisms. In fact, bornyl 3′,4′-dimethoxybenzoate (13) was active against all tested bacteria and fungus.     

Photoisomerization kinetics of trifloxystrobin

The photoisomerization kinetics of trifloxystrobin (TFS) in acetone under artificial sunlight is reported. HPLC analysis showed the TFS, a strobilurine fungicide of EE conformation, was converted into an equilibrium mixture of four isomers after illumination for 7 h. The isomers were identified as EZ, EE, ZZ, and ZE and were separated in the crystalline form by preparative HPLC and characterized by use of a variety of spectroscopic techniques. The quantum yield and reaction constants for the isomerization reactions were determined. The detailed spectral features of the individual isomers measured by UV, IR, Raman, NMR and mass spectroscopy are presented and compared. The spectra of the isomers were found to be very characteristic, with good analytical significance.     

Raman spectra and molecular dynamics of R2NPX2 (R=Me and Et; X=F, Cl, and Br)

The Raman spectra of compounds R₂NPX₂ (R=Me and Et; X=F, Cl, and Br) were studied. The time correlation functions of vibrational and rotational relaxations as well as the characteristic times of these processes were calculated. Conclusions concerning the mechanisms of formation of the contours of the Raman lines with frequencies in the 670–705 cm⁻¹ range corresponding to the totally symmetric vibrations of the P-N bond in the R₂NPX₂ molecules were drawan. Translated fromIzvestiya Akademii Nauk, Seriya Khimicheskaya, No. 5, pp. 961–967, May 1997.