N-烷基化聚对苯二甲酰对苯二胺梳状高分子中烷基侧链对刚性主链堆积行为的影响

基于聚对苯二甲酰对苯二胺(PPTA), 采用N-烷基化方法制备了系列PPTACns(烷基侧链碳原子数n=8, 10, 12, 14, 16, 18)刚性主链梳状高分子, 利用DSC, XRD和FTIR等方法研究了其主链堆积行为、 分子链构象及热性能等与烷基侧链长度及结晶特性之间的关系. XRD和DSC结果表明, 当烷基侧链碳原子数达到14时, 烷基侧链发生结晶. XRD结果显示, PPTACns具有层状结构, 烷基侧链长度对主链层间距影响显著. FTIR研究发现, 烷基侧链的聚集状态对PPTACns分子链的构象产生较大影响, 伴随着烷基侧链结晶的熔融, PPTACns的分子链构象发生显著改变. 烷基侧链处于熔融状态的PPTACns的ν_C=O和γ_C-H谱带峰位与烷基侧链不结晶的PPTACn接近.     

Vibration Spectroscopy Study of Phenylphosphonate at the Water–Aluminum (Hydr)Oxide Interface

Two previously published surface complexation models of phenylphosphonate on aged γ-Al₂O₃and boehmite (γ-AlOOH), respectively, have been examined by means of FTIR and FT-Raman spectroscopy. The spectral features of adsorbed phenylphosphonate were studied as a function of pH and total phenylphosphonate concentration. No evidence for a phase transformation into a three-dimensional aluminum phenylphosphonate phase was found. This suggested that phenylphosphonate is sorbed as surface complexes under the conditions used in this study. Both the infrared and the Raman data showed that the surface-bound phenylphosphonate ions undergo protonation reactions as pH is varied. These results together with the fact that the ligand has only two donor atoms for complexation and protonation led to the conclusion that a monodentate coordination to the surface is most likely in both systems. Overall, the spectroscopic results were in good qualitative agreement with the thermodynamic surface complexation models.     

Modeling amino acid side chains in proteins: 15N NMR spectra of guanidino groups in nonpolar environments

Natural-abundance 15N NMR spectroscopy on dodecylguanidine reveals solvent and protonation effects that model those that could occur for the arginine side chain in proteins. Our results demonstrate that the 15N chemical shifts of the terminal guanine nitrogens strongly depend on the solvent chosen for measurements. A polar H-bond-donating solvent like water has strongly deshielding effects on the neutral guanidine group (with the latter acting predominantly as an H-bond acceptor). As a result, a substantial upfield shift occurs when neutral guanidine is dissolved instead in a non-H-bonding solvent (chloroform). These solvent effects can be as large as those induced by protonation changes. This limits the ability of 15N chemical shifts to distinguish the protonation state of the arginine side chain, at least without specific knowledge of its environment. These results help to reconcile previous interpretations about the protonation state arg-82 in the M state of bacteriorhodopsin based on FTIR and 15N NMR spectroscopy. That is, contrary to earlier conclusions from solid-state NMR, the side chain of arg-82 could undergo a deprotonation between the bR and M states, but only if it also experienced a significant decrease in the H-bonding character and polarity of its environment. In fact, the average 15N chemical shift of the two Neta of arg-82 in bacteriorhodopsin's M intermediate (from the previous NMR measurements) is 17 ppm upfield from the corresponding value for the deprotonated arginine side chain in aqueous solution at pH >14, but only 3 ppm upfield from the value for deprotonated dodecylguanidine in chloroform.     

LB film structure of poly(2-methoxy,5-(8-methoxy-3,6-dioxa-1-undecoxy)-p-phenylene vinylene) studied by spectroscopy

A PPV derivative, poly(2-methoxy,5-(8-methoxy-3,6-dioxa-1-undecoxy)-p-phenylene vinylene), has been synthesized by the Gilch route to study the influence of a long alkyl side chain and a di(ethylene oxide) methyl ether group on the multilayer structure obtained by Langmuir-Blodgett (LB) technique. UV-visible, PL, and FTIR spectra are applied to study the conformation and orientation of the MMDU-PPV molecules in multilayer organization. MMDU-PPV is apt to form a transferable monolayer film, in which the plane of its pi system is perpendicular to the air-water interface. The adjacent conjugated main chains of MMDU-PPV in LB films are aligned in parallel fashion and packed with the plane of its pi system approximately perpendicular to the layer plane and not organized to compact pi-stacking structure for introducing di(ethylene oxide) methyl ether (DEOM) side chains to conjugated main chains. The long alkyl side chains are characterized by all trans-zigzag conformation and average tilt angle of 36+/-1.5 degrees. The layer-by-layer multilayer of MMDU-PPV obtained by Langmuir-Blodgett technique exhibits some in-plane anisotropy and more pure photoluminescence than that of the dilute MMDU-PPV solution.     

In situ ATR-IR investigation of L-lysine adsorption on montmorillonite

The adsorption behavior of lysine on montmorillonite in aqueous solution was investigated by in situ attenuated total reflectance infrared (ATR-IR) spectroscopy. To distinguish the protonation states of α-amino group, side-chain amino group and carboxyl group in lysine structure using ATR-IR spectra (i.e., NH₂ versus and COO⁻ versus COOH), pH-induced spectral changes of dissolved lysine were firstly measured and correlated with the thermodynamically calculated dissociation states of lysine (di-cationic, cationic, zwitterionic and anionic states). The obtained result was applied to interpret the ATR-IR spectra of lysine adsorbed on montmorillonite. We found that the adsorbed lysine was dominantly present as cationic state over the whole range of tested pH (pH = 4.9–9.7). This indicates that the adsorption is mainly driven by electrostatic interaction between the negatively charged montmorillonite surface and positively charged cationic lysine. We also found that lysine interacts with montmorillonite surface through the protonated side-chain amino group. This result suggests that lysine has a preferred vertical orientation, with the side-chain amino group pointing toward the surface.     

Conformations in dioctyl substituted polyfluorene: a combined theoretical and experimental Raman scattering study

The structural properties of polyfluorenes (PF) are extremely sensitive to the choice of functionalizing side chains. Dioctyl substituted PF (PF8) adopts metastable structures that depend upon the thermal history and choice of solvents used in film forming conditions. We present a detailed study of the changes in the backbone and side chain morphology in PF8, induced by the various crystallographic phases, using Raman scattering techniques. The vibrational frequencies and intensities of fluorene oligomers are calculated using hybrid density-functional theory with a 3-21G(*) basis set. The alkyl side chains are modeled as limiting conformations: all anti, anti-gauche-gauche, and end gauche representations. The calculated vibrational spectra of single chain oligomers in conjunction with our experimental results demonstrate the beta phase, which is known to originate in regions of enhanced chain planarity as a direct consequence of the alkyl side chain conformation.     

聚N-甲基苯胺的质子酸掺杂

聚N-甲基苯胺(PMAn)可用酸碱进行可逆的掺杂及反掺杂。掺杂使电导增大。掺杂过程在本质上是链的质子化过程,与阴离子无关。用FTIR、UV-VIS、ESR表征了掺杂前后结构的变化。结果表明,掺杂后链上来偶电子增加,电子及电荷更加离域化,并与电导率增大相吻合。PMAn的导电载流子可能是离域化的阳离子自由基。     

偶氮苯衍生物自组装单分子膜中的分子取响

利用反射红外光谱研究了金表面一系列具有不同碳链长度的偶氮苯巯基衍生物的自组装单分子膜.通过对比各向同性样品的透射谱和单分子膜的反射谱中各个吸收峰强度,定量地研究了分子中各部分的取向与分子结构的关系.我们分别提出了烷基链和偶氮基团取向计算的方法,利用该方法成功地求得了分子中各部分在膜的倾角.结果显示,当分子中烷基链长度增大时,碳链和偶氮苯基团相对于法线的倾斜逐渐加剧.这种倾角的变化归因于分子中碳链间范德华引力增大时,引起分子逐渐倾斜以达到最佳的范德华接触.同时研究发现,烷基链和偶氮基团受碳长度变化的影响并不相同.当分子中亚甲基数目增多时,烷基链的倾角迅速增大而偶氮苯倾角的增大则相对缓慢,这反映了它们在空间需求和本身刚性上的不同。     

Blend of electroactive poly(3-dodecylthiophene) with comb-like alkylated polyacrylate

The conformational mode change of the stiff alkylated polymer, poly(3-dodecyl thiophene) (PDDT), with a flexible comb-like coil poly(octadecyl acrylate) (PODA), and the effect of intermolecular interaction between these two alkylated polymers with different chemical structure of the backbone were investigated using UV-Vis spectroscopy, Fourier transform infrared (FTIR) spectroscopy, differential scanning calorimeter (DSC), and wide-angle x-ray diffraction (WAXD). In addition to the characteristics of thermochromism, a homogeneous one phase was observed above 175°C when the PODA content was 10 wt % or less. Increased conductivity in the PDDT/PODA blend due to the highly conjugated π-system of PDDT backbone was observed in the presence of nonelectroactive PODA. A red-shift of absorption maximum of PDDT/PODA blend observed in solid state at room temperature. From the FTIR spectra, the gauche-trans conformational structure change of methylene units was investigated in two alkylated polymer blends. The increase of combined heat of fusion of the alkyl side chain melting of PDDT and the endothermic peak of PODA, as well as the interlayer d-spacing of PDDT main chain were also observed with the addition of PODA in blends. A more ordered conformational structure of rigid rod backbone of PDDT was induced due to the attractive intermolecular interaction which can cause cocrystallization between the alkylated side chains of two polymers. © 1997 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 35 :1025–1041, 1997     

Probing the Hydrogen Bonding Structure in the Rieske Protein

The use of the far‐infrared spectral range presents a novel approach for analysis of the hydrogen bonding in proteins. Here it is presented for the analysis of Fe? S vibrations (500–200 cm^?1) and of the intra‐ and intermolecular hydrogen bonding signature (300–50 cm^?1) in the Rieske protein from Thermus thermophilus as a function of temperature and pH. Three pH values were adequately chosen in order to study all the possible protonation states of the coordinating histidines. The Fe? S vibrations showed pH‐dependent shifts in the FIR spectra in line with the change of protonation state of the histidines coordinating the [2Fe? 2S] cluster. Measurements of the low‐frequency signals between 300 and 30 K demonstrated the presence of a distinct overall hydrogen bonding network and a more rigid structure for a pH higher than 10. To further support the analysis, the redox‐dependent shifts of the secondary structure were investigated by means of an electrochemically induced FTIR difference spectroscopic approach in the mid infrared. The results confirmed a clear pH dependency and an influence of the immediate environment of the cluster on the secondary structure. The results support the hypothesis that structure‐mediated changes in the environment of iron? sulfur centers play a critical role in regulating enzymatic catalysis. The data point towards the role of the overall internal hydrogen bonding organization for the geometry and the electronic properties of the cluster.     

Infrared spectra and molar absorption coefficients of the 20 alpha amino acids in aqueous solutions in the spectral range from 1800 to 500 cm(-1)

In this work, we present the absorption spectra and molar coefficients of all 20 amino acids in aqueous solutions down to 500 cm(-1). The spectral region between 1200 and 500 cm(-1) was yet disregarded for protein infrared spectroscopy, mainly due to the strong H(2)O absorption. Absorption spectra were obtained mainly for physiological relevant pH region. Intense bands for aromatic amino acids, histidine and such with OH group could clearly be identified throughout the given spectral region. For sulfur-containing amino acids cysteine and methionine some strong bands besides the weak carbon-sulfur stretching vibration was shown. Effects of aqueous solution environment, pH, protonation states were discussed, together with previously reported data from theoretical approaches. With this complete set of spectral information application to proteins in the whole mid infrared region could be described precise and the potential of the lower spectral region to study typical cofactor ligands like histidine, shown.     

Surface structure and properties of poly-(ethylene terephthalate) hydrolyzed by alkali and cutinase

This study was aimed at comparatively investigating the hydrolysis of crystalline and amorphous poly-(ethylene terephthalate) films by alkali and cutinase. Changes of surface properties were investigated by FTIR spectroscopy (ATR mode). The A₁₃₄₁/A₁₄₁₀ and I₁₁₂₀/I₁₁₀₀ absorbance ratios, and the full width at half maximum of the carbonyl stretching band (FWHM₁₇₁₅) were used to evaluate the polymer crystallinity and its changes upon hydrolysis. The effect of different treatments on chain orientation was evaluated by calculating R ratios of appropriate bands. The spectroscopic indexes showed that both alkali and enzyme treatments induced structural and conformational rearrangements with a consequent increase in crystallinity in both amorphous and crystalline films. The crystalline PET film was modified more strongly by alkali than by cutinase, while the opposite occurred for the amorphous one. The trend of the water contact angle (WCA) clearly indicates that alkali is more effective than cutinase in enhancing hydrophilicity of PET films and that the effect is stronger on amorphous than on crystalline films. The values of WCA correlate well with the FTIR indexes calculated from the spectra of hydrolyzed crystalline PET films. The mechanism of the surface hydrolysis of PET by alkali and cutinase is discussed.     

Spectral Response to Protonation of 4-(4-(4-(Didodecylamino)phenylazo)phenyl)butyric Acid in Its Langmuir-Blodgett Monolayer

4-(4-(4-(Didodecylamino)phenylazo)phenyl)butyric acid is synthesized, and its Langmuir-Blodgett (LB) monolayer is successfully fabricated. The drastic changes in electronic spectra of this compound are found in acidic solution and in LB monolayer upon exposure to HCl vapor (mainly the decrease in absorption at 416 nm and great increase at 540 nm). The UV-visible and infrared spectra reveal a mechanism of protonation to either azo group or amino group. This phenomenon has been suggested to have its prospective application in fundamental interfacial materials for pH sensors. Copyright 2000 Academic Press.     

Infrared studies of pyroelectric Langmuir–Blodgett films of arachidic acid and 1,2-bis(dodecyloxy)-4,5-diaminobenzene

Fourier Transform Infrared (FTIR), p-polarized grazing angle (GAIR) and Horizontal Attenuated Total Reflectance (HATR) spectra have been recorded of arachidic acid (AA)/1,2-bis(dodecyloxy)-4,5-diaminobenzene (DADB) Y-type alternate LB films deposited on an aluminium plate with 31 layers. It is well known that the frequencies of CH₂ stretching bands of a hydrocarbon chain are sensitive to the conformational ordering of the chain. Changes in frequency and intensity can be used to characterize film ordering and preferential molecular packing. The observed peak frequencies and intensities of these bands indicate that the alkyl chains are present in a mostly trans conformation and tilted from the normal direction with respect to the substrate in LB films. The FTIR–GAIR and HATR spectra of 31 layers alternate film show significant changes in the region 1700–1400 cm⁻¹ due to the partial proton transfer between acid and amine head groups. According to the HATR spectrum, the peak at 1731 cm⁻¹ is observed due to a proportion of the carboxylic acid groups forming sideways dimers indicating that if the carboxylic acid groups form sideways dimers, they are less likely to undergo proton transfer with the amino groups.     

Residue-specific pKa determination of lysine and arginine side chains by indirect 15N and 13C NMR spectroscopy: application to apo calmodulin

Electrostatic interactions in proteins can be probed experimentally through determination of residue-specific acidity constants. We describe here triple-resonance NMR techniques for direct determination of lysine and arginine side-chain protonation states in proteins. The experiments are based on detection of nonexchangeable protons over the full range of pH and temperature and therefore are well suited for pKa determination of individual amino acid side chains. The experiments follow the side-chain 15Nzeta (lysine) and 15Nepsilon or 13Czeta (arginine) chemical shift, which changes due to sizable changes in the heteronuclear electron distribution upon (de)protonation. Since heteronuclear chemical shifts are overwhelmed by the charge state of the amino acid side chain itself, these methods supersede 1H-based NMR in terms of accuracy, sensitivity, and selectivity. Moreover, the 15Nzeta and 15Nepsilon nuclei may be used to probe changes in the local electrostatic environment. Applications to three proteins are described: apo calmodulin, calbindin D9k, and FKBP12. For apo calmodulin, residue-specific pKa values of lysine side chains were determined to fall between 10.7 and 11.2 as a result of the high net negative charge on the protein surface. Ideal two-state titration behavior observed for all lysines indicates the absence of significant direct charge interactions between the basic residues. These results are compared with earlier studies based on chemical modification.     

Tensile deformation of polyamide (PA) 6 probed by rheo-optical near-infrared (NIR) spectroscopy

A rheo-optical near-infrared (NIR) spectroscopy, based on the combination of NIR spectroscopy and mechanical analysis, was applied to polyamide (PA) 6 samples consisting of bundled amorphous chains. Sets of strain-dependent NIR spectra as well as tensile stress of dried and wet treated PA 6 samples were collected during the mechanical elongation of the samples. The spectra were then subjected to two-dimensional (2D) correlation analysis to elucidate fine features of the spectral changes. An asynchronous correlation peak develops between the bands at 2355 and 2300 nm due to the combination modes of CH₂ groups arising from the rubbery amorphous chain and rigid crystalline lamella of the dried PA 6, respectively. It therefore indicates that during the tensile deformation, the orientation of the amorphous chain is induced first to cause the elastic deformation. Further elongation results in the rotation of the crystalline lamella connected with the amorphous chain. This correlation intensity apparently increases by the wet treatment, suggesting that water molecule in the PA 6 disrupts the H-bonding interaction between the adjacent polymer chains and thus makes the polymer more flexible. Accordingly, it is likely the H-bonding between the polymer chains works in a manner somewhat similar to cross-linked polymers, which substantially effects on the mechanical property of the PA 6.     

New insights into the mechanism of purple acid phosphatase through (1)H NMR spectroscopy of the recombinant human enzyme

Proton NMR spectra of FeIII-FeII recombinant single polypeptide human PAP (recHPAP) have been measured at, above, and below its pH optimum, as have the spectra of inhibited forms containing fluoride and phosphate, analogues of the substrates hydroxide and phosphate esters, respectively. The results demonstrate that binding of inhibitory anions to the dinuclear mixed-valent site of recHPAP is controlled by protonation of a ligand to the dinuclear center. Thus, the group that is responsible for pKa,1 in the enzymatic activity versus pH profile functions as a "gatekeeper", whose protonation state controls anion binding to the mixed-valent dinuclear site. The correlation between the pKa values observed in kinetics studies and for the spectroscopic changes strongly suggests that this group is the nucleophilic hydroxide that attacks the phosphate ester substrate.     

Environment-controlled interchromophore charge transfer transitions in dipeptides probed by UV Absorption and electronic circular dichroism spectroscopy

Charge transfer (CT) transitions between the C-terminal carboxylate and peptide group have been investigated for alanyl-X and X-alanine dipeptides by far-UV absorption and electronic circular dichroism (ECD) spectroscopy (where X represents different amino acid residues). The spectra used in the present study were obtained by subtracting the spectrum of the cationic species from that of the corresponding zwitterionic peptide spectrum. These spectra displayed three bands, e.g., band I between 44 and 50 kK (kK = 10(3) cm(-1)), band II at 53 kK, and band III above 55 kK, which were, respectively, assigned to a n(COO-) --> pi* CT transition, a pi(COO-) --> pi* CT transition, and a carboxylate pi --> pi* (NV1) transition, respectively By comparison of the intensity, bandwidth, and wavenumber position of band I of some of the investigated dipeptides, we found that positive charges on the N-terminal side chain (for X = K), and to a minor extent also the N-terminal proton, reduce its intensity. This can be understood in terms of attractive Coulomb interactions that stabilize the ground state over the charge transfer state. For alanylphenylalanine, we assigned band I to a n(COO-) --> pi* CT transition into the aromatic side chain, indicating that aromatic side chains interact electronically with the backbone. We also performed ECD measurements at different pH values (pH 1-6) for a selected subset of XA and AX peptides. By subtraction of the pH 1 spectrum from that observed at pH 6, the ECD spectrum of the CT transition was obtained. A titration curve of their spectra reveals a substantial dependence on the protonation state of the aspartic acid side chain of AD, which is absent in DA and AE. This most likely reflects a conformational transition of the C-terminus into a less extended state, though the involvement of a side chain --> peptide CT transition cannot be completely ruled out.     

Spectroscopic quantification of covalently immobilized oligonucleotides

Quantitative determination of surface coverage, film thickness and molecular orientation of DNA oligomers covalently attached to aminosilane self‐assembled monolayers has been obtained using complementary infrared and photoelectron studies. Spectral variations between surface immobilized oligomers of the different nucleic acids are reported for the first time. Carbodiimide condensation was used for covalent attachment of phosphorylated oligonucleotides to silanized aluminum substrates. Fourier transform infrared (FTIR) spectroscopy and x‐ray photoelectron spectroscopy (XPS) were used to characterize the surfaces after each modification step. Infrared reflection–absorption spectroscopy of covalently bound DNA provides orientational information. Surface density and layer thickness are extracted from XPS data. The surface density of immobilized DNA, 2–3 (×10¹³) molecules cm^?2, was found to depend on base composition. Comparison of antisymmetric to symmetric phosphate stretching band intensities in reflection–absorption spectra of immobilized DNA and transmission FTIR spectra of DNA in KBr pellet indicates that the sugar–phosphate backbone is predominantly oriented with the sugar–phosphate backbone lying parallel to the surface, in agreement with the 10–20 Å DNA film thickness derived from XPS intensities. Copyright © 2004 John Wiley & Sons, Ltd.     

One Pot Synthesis of Amphiphilic Hyperbranched Poly-(amino ester)and Its Dynamic Surface Activity

Amphiphilic hyperbranched poly(amino ester)s with hydrophilic multi‐ethoxylated triacrylate backbone and hydrophobic long alkyl side chain were firstly synthesized via one pot Michael addition polymerization. The poly‐(amino ester) could dissolve in cold water and self‐assemble into loose micelle. Under 50–1000 ms bubble, the dynamic surface tension (DST) of the poly(amino ester) aqueous solution (0.5 wt%) still maintained in the range of 32–28 mN/m. The aqueous solutions of poly(amino ester)s with different molecular weights showed the lower critical solution temperature (LCST) in the range of 8–50°C, which could also be tuned by its pH. Capped with hydrophobic groups on the terminal units and partially neutralized with acid, the poly(amino ester)s still kept their stable dynamic surfactant behaviors, indicating promising application.