Density Functional Theory Study on (Cl2GaN3)n(n=1–4) Clusters

The molecular geometries, vibrational properties, and thermodynamic properties of the clusters (Cl₂GaN₃)_n(n=1–4) have been predicted at the B3LYP/6‐311+G* level. The optimized clusters (Cl₂GaN₃)_n (n=2–4) all possess cyclic structures containing Ga N_α Ga linkages. The relationships between geometrical parameters and oligomerization degree n are discussed. The gas‐phase structures of the trimers prefer to exist in boat‐twisting conformation. As for the tetramer, the S₄ symmetry structure is the most stable. The infrared spectra are obtained and assigned by vibrational analysis. Thermodynamic properties derived from the infrared spectra on the basis of statistical thermodynamic principles are linearly correlated with the oligomerization degree n as well as the temperature. Meanwhile, thermodynamic analysis of the gas‐phase reaction suggests that the oligomerization is exothermic and favorable under high temperature.     

2,2′‐Anhydro‐1‐(3′,5′‐di‐O‐acetyl‐β‐D‐arabinofuranosyl)uracil,a cyclouridine nucleoside with a C4′‐endo furanosyl conformation

2,2′‐Anhydro‐1‐(3′,5′‐di‐O‐acetyl‐β‐D‐arabinofuranosyl)uracil, C₁₃H₁₄N₂O₇, was obtained by refluxing 2′,3′‐O‐(methoxymethylene)uridine in acetic anhydride. The structure exhibits a nearly perfect C4′‐endo (⁴E) conformation. The best four‐atom plane of the five‐membered furanose ring is O—C—C—C, involving the C atoms of the fused five‐membered oxazolidine ring, and the torsion angle is only −0.4 (2)°. The oxazolidine ring is essentially coplanar with the six‐membered uracil ring [r.m.s. deviation = 0.012 (5) Å and dihedral angle = −3.2 (3)°]. The conformation at the exocyclic C—C bond is gauche–trans which is stabilized by various C—H...π and C—O...π interactions.     

1,4‐Di(isopropyl)‐1,4‐diazabutadien als Abfangreagenz für monomere Bruchstücke des Tetragalliumclusters Ga4[C(SiMe3)3]4 – Bildung eines ungesättigten GaN2C2‐Heterocyclus und eines Oxidationsprodukts mit Ga‐O‐O‐Ga‐Gruppe

1,4‐Di(isopropyl)‐1,4‐diazabutadiene as a Reagent for the Trapping of Monomeric Fragments of the Tetragalliumcluster Ga₄[C(SiMe₃)₃]₄ – Formation of an Unsaturated GaN₂C₂ Heterocycle and an Oxidation Product Containing a Ga‐O‐O‐Ga Group The tetrahedral tetragallium cluster Ga₄[C(SiMe₃)₃]₄ ( 1 ) dissociates upon dissolution to yield the monomeric fragments Ga‐R [R = C(SiMe₃)₃]. These monomers could be trapped now by the treatment of their solutions with 1,4‐di(isopropyl)‐1,4‐diazabutadiene. The product of the cycloaddition reaction ( 2 ) possesses a five‐membered GaN₂C₂ heterocycle with a coordinatively unsaturated gallium atom and an endocyclic C=C double bond. 2 is rather sensitive towards oxidation by traces of air. The contact with oxygen yielded a digallium peroxide [(C₂N₂iPr₂)RGa‐O‐O‐GaR(C₂N₂iPr₂)] ( 3 ) which was isolated in a very low yield only and which has a gallium atom attached to each oxygen atom of the inner peroxo group. Both chelating ligands of 3 possess an unpaired electron.     

cis‐[(4R,5R)‐4,5‐Bis­(amino­methyl)‐2,2‐di­methyl‐1,3‐dioxolane‐N,N′](malonato‐O,O′)­platinum(II), an anticancer agent

In the title compound, [Pt(C₃H₂O₄)(C₇H₁₆N₂O₂)], the Pt atom is coordinated to two O and two N atoms in a square‐planar arrangement. The two independent mol­ecules, which have very similar structures, are approximately related by pseudo‐twofold screw‐axis symmetry. The six‐membered chelate ring in the leaving ligand assumes a conformation intermediate between the half‐chair and boat forms. The seven‐membered ring in the carrier ligand assumes a twist‐chair conformation and the oxolane ring assumes an envelope conformation. The crystal packing consists of extensive hydrogen‐bonding networks which form two‐dimensional molecular layers, and there are weak van der Waals interactions between these layers.     

Two intermediates in the synthesis of deca­hydro­iso­quinolines with NMDA and AMPA receptor antagonist activity

In 6‐methyl‐N‐(4‐nitro­benzoyl)‐5,6‐di­hydropyridin‐2(1H)‐one, C₁₃H₁₂N₂O₄, (I), the piperidone ring is in a distorted half‐chair conformation. In 8‐methoxy‐3‐methyl‐N‐(4‐nitro­benzoyl)‐1,2,3,4,5,6,7,8‐octa­hydro­iso­quinoline‐1,6‐dione, C₁₈H₂₀N₂O₆, (II), the heterocyclic ring is in a slightly distorted half‐boat conformation, while the other six‐membered ring is in a distorted chair conformation. Compound (II) presents a strong intramolecular C—H?O hydrogen bond. In both (I) and (II), the mol­ecules interact through C—H?O interactions.     

Poly[[μ3‐2‐(carboxylatomethyl)benzoato‐κ3O1:O2:O2]bis(1H‐imidazole‐κN3)copper(II)]

In the title polymeric compound, [Cu(C₉H₆O₄)(C₃H₄N₂)₂]_n, the copper(II) cation occupies an N₂O₃ coordination sphere defined by two 1H‐imidazole (imid) ligands in trans positions and three carboxylate O atoms from three different 2‐(carboxylatomethyl)benzoate (hpt²⁻) dianions. The geometry is that of a square pyramid with one of the O atoms at the apex, bridging neighbouring metal centres into an [–ON₂CuO₂CuN₂O–] dinuclear unit. These units are in turn connected by hpt anions into a reticular mesh topologically characterized by two types of loops, viz. a four‐membered Cu₂O₂ diamond motif and a 32‐membered Cu₄O₈C₂₀ ring. The imid groups do not take part in the formation of the two‐dimensional structure, but take part in the N—H...O interactions. These arise only within individual planes, interplanar interactions being only of the van der Waals type.     

Unusual Encapsulation of Two Anions in the Cavity of Neutral Macrocyclic Octalactam,Preliminary Communication

A new neutral anion receptor – macrocyclic octalactam 2 , possessing a large 36‐membered ring, was synthesized, and its unusual property of encapsulation of two Cl⁻ ions and two H₂O molecules in the cavity was confirmed by X‐ray crystallography (see Figure). The octalactam, consisting of four 2,6‐dicarbamoylpyridine and four ethylene moieties, exhibits a symmetrical, fully expanded conformation in the complex [(Cl)₂( 2 )(H₂O)₂]²⁻ (obtained as 2 ⋅2 Bu₄NCl⋅4 H₂O⋅2 CH₂Cl₂). Inside the cavity, encapsulated species – two Cl⁻ ions and two H₂O molecules – are connected to each other by H‐bonds. This kind of complex‐in‐complex system is formed by means of twenty intra‐ring H‐bonds and additionally four from the ‘outside' H₂O molecules. Considering size and symmetry, it can be stated that the planar (H₂O⋅Cl⁻)₂ dimer fits well into the cavity of octalactam 2 . The ligand has an optimal arrangement of binding sites to form H‐bonds to every corner of the dimer.     

(2,2′‐Dipyridyl sulfide‐N,N′)hydroxybis(nitrito‐O)(nitrogen monoxide‐N)ruthenium(III)

The title compound, [Ru(NO₂)₂(OH)(C₁₀H₈N₂S)(NO)], is the main product of the reaction between RuCl₃ and dps (dps is 2,2′‐dipyridyl sulfide, C₁₀H₈N₂S) in ethanol–water at room temperature followed by reaction with NaNO₂ at a higher temperature. The Ru atom has a distorted octahedral coordination geometry with the dps mol­ecule behaving as an N,N′‐bidentate ligand. The six‐membered chelate ring adopts a boat conformation.     

DFT Study of Dimethylaluminum Azide Clusters： Structures,Energies, Frequencies and Thermodynamic Properties

Introduction The organoaluminum azide compounds have been widely used in many fields. These compounds are used as the azidating agents,1-3 and the energetic materials which are always used in national defence industry and in space technology, especially to generate thin films of AlN in various chemical vapor deposition (CVD) sys-tems.4-6 Aluminum nitride has useful properties for coatings, especially for optical or optoelectronic devices, acoustic wave devices and electronic microcircuits.7 …     

[N‐(Carboxyl­ato­methyl)­aspartato(3–)](ethyl­enedi­amine)­cobalt(III) trihydrate

The mononuclear title complex, [Co(C₆H₆NO₆)(C₂H₈N₂)]·3H₂O, contains an octahedrally coordinated Co^III atom. The N‐(carboxy­methyl)­aspartate moiety is coordinated as a tetradentate ligand, providing an OONO‐donor set and forming two trans five‐membered chelate rings and one six‐membered chelate ring. A seven‐membered chelate ring is also formed, which consists of part of the six‐membered chelate ring and part of one of the five‐membered chelate rings. The crystal structure of the complex is stabilized by hydrogen bonds with three water mol­ecules.     

Bis(acesulfamato‐κ2N3,O4)bis­(2‐amino­pyrimidine‐κN1)copper(II)

In the crystal structure of the title compound, bis­(2‐amino­pyrimidine‐κN¹)bis­[6‐meth­yl‐1,2,3‐oxathia­zin‐4(3H)‐one 2,2‐dioxide(1−)‐κ²N³,O⁴]copper(II), [Cu(C₄H₄NO₄S)₂(C₄H₅N₃)₂], the first mixed‐ligand complex of acesulfame, the Cu^II centre resides on a centre of symmetry and has an octa­hedral geometry that is distorted both by the presence of four‐membered chelate rings and by the Jahn–Teller effect. The equatorial plane is formed by the N atoms of two amino­pyrimidine (ampym) ligands and by the weakly basic carbonyl O atoms of the acesulfamate ligands, while the more basic deprotonated N atoms of these ligands are in the elongated axial positions with a strong misdirected valence. The crystal is stabilized by pyrimidine ring stacking and by inter­molecular hydrogen bonding involving the NH₂ moiety of the ampym ligand and the carbon­yl O atom of the acesulfamate moiety.     

Synthesis and Structure of MnCl2(HDpyF) (HDpyF = N,N′‐di(2‐pyridyl)formamidine): New Crystallographic Disorder and Bonding Mode of the HDpyF Ligand

The reaction of N,N′‐di(2‐pyridyl)formamidine (HDpyF) with MnCl₂‐4H₂O afforded the complex MnCl₂(HDpyF), which was characterized by X‐ray crystallography. The HDpyF ligand chelates to the Mn(II) center through the first and the third nitrogen atoms to form a six‐membered ring, leaving the second and the fourth nitrogen atoms uncoordinated. The HDpyF ligand is crystallographically disordered such that two different molecules can be solved. The neutral HDpyF ligand adopts the new s‐cis‐syn‐s‐trans conformation.     

N‐Ethylpyridinium bis(2‐thioxo‐1,3‐dithiole‐4,5‐dithiolato)nickelate

The title compound, (C₇H₁₀N)[Ni(C₃S₅)₂] or (Etpy)[Ni(dmit)₂] (where Etpy is the N‐ethyl­pyridinium cation, C₇H₁₀N⁺, and dmit is the 2‐thio­xo‐1,3‐di­thiole‐4,5‐di­thiol­ate dianion, C₃S₅²⁻), crystallizes in the P space group with two mol­ecules in the asymmetric unit. The [Ni(dmit)₂]⁻ monoanion has a planar D_2h conformation, with the central Ni atom and the four coordinated S atoms forming an NiS₄ square plane. The six‐membered ring of the Etpy cation also shows good planarity, as expected. There are two main types of disorder in the two Etpy cations. Several short intermolecular interactions are present, such as S⋯S, Ni⋯S and Ni⋯Ni, which help to form the enhanced three‐dimensional structure of the crystal.     

μ‐{N,N′‐Bis[2‐(dimethyl­amino)ethyl]oxamidato(2–)}‐1κ2O,O′:2κ4N,N′,N′′,N′′′‐bis­(4,4′‐dimethyl‐2,2′‐bipyridine‐1κ2N,N′)dinickel(II) bis­(perchlorate)

In the crystal structure of the title complex, [Ni₂(C₁₀H₂₀N₄O₂)(C₁₂H₁₂N₂)₂](ClO₄)₂ or [Ni(dmaeoxd)Ni(dmbp)₂](ClO₄)₂ {H₂dmaeoxd is N,N′‐bis­[2‐(dimethyl­amino)ethyl]oxamide and dmbp is 4,4′‐dimethyl‐2,2′‐bipyridine}, the deprotonated dmaeoxd²⁻ ligand is in a cis conformation and bridges two Ni^II atoms, one of which is located in a slightly distorted square‐planar environment, while the other is in an irregular octa­hedral environment. The cation is located on a twofold symmetry axis running through both Ni atoms. The dmaeoxd²⁻ ligands inter­act with each other via C—H⋯O hydrogen bonds and π–π inter­actions, which results in an extended chain along the c axis.     

The infinite double‐stranded chain polymer catena‐poly­[[bis­(dicyan­amido)­zinc(II)]‐di‐μ‐1,2‐bis(1,2,4‐triazol‐1‐yl)­ethane‐κ4N4:N4′]

The coordination geometry of the Zn^II atom in the title complex, [Zn(C₂N₃)₂(C₆H₈N₆)₂]_n or [Zn(dca)₂(bte)₂]_n, where bte is μ‐1,2‐bis(1,2,4‐triazol‐1‐yl)­ethane and dca is dicyan­amide, is distorted compressed octahedral, in which the Zn^II atom lies on an inversion center and coordinates four N atoms from the triazole rings of four symmetry‐related bte ligands and two N atoms from two symmetry‐related monodentate dca ligands. The structure is polymeric, with 18‐membered spiro‐fused rings extending in the b direction and each 18‐membered ring involving two inversion‐related bte mol­ecules.     

A cobalt(III) compound of a 13‐membered cyclic tetra­amine: trans‐(12,12‐dimethyl‐1,4,7,10‐tetra­aza­cyclo­tetra­decane)diisothio­cyanato­cobalt(III) tetra­isothio­cyanato­zinc(II) ethanol solvate

The title compound, [Co(NCS)₂(C₁₁H₂₆N₄)]₂[Zn(NCS)₄]·C₂H₅OH, has two similar cations with the Co^III atom coordinated in a planar fashion by the 13‐membered cyclic tetra­amine, in the 1R,4S,7R,10S configuration, and with trans isothio­cyanate ligands. The six‐membered chelate ring is in a chair conformation, with one axially and one equatorially oriented methyl substituent [mean Co—N = 1.948 (2) Å]. The `opposite' chelate ring (N<sup>4</sup> and N<sup>7</sup>) is in an eclipsed conformation [mean Co—N = 1.928 (2) Å], and the `side' chelate rings have gauche conformations. The mean Co—N_NCS distance is 1.928 (2) Å. Both cations have one Co—N—C group nearly linear and the other appreciably bent, with mean Co—N—C angles of 178.7 (1) and 160.4 (1)°, respectively. The [Zn(NCS)₄]²⁻ anion is approximately tetra­hedral, with Zn—N = 1.951 (1)–1.986 (1) Å, N—Zn—N = 104.5 (1)–111.9 (1)° and Zn—N—C = 152.5 (1)–179.4 (1)°. One NH group is hydrogen bonded to the ethanol O atom and the other NH groups are bonded to thio­cyanate S atoms, forming a network.     

5‐Methyl‐6‐aza‐2′‐deoxy­isocytidine

In the title compound, 3‐amino‐2‐(2‐deoxy‐β‐d ‐erythro‐pento­furan­osyl)‐6‐methyl‐1,2,4‐triazin‐5(2H)‐one, C₉H₁₄N₄O₄, the conformation of the N‐glycosidic bond is high‐anti and the 2‐deoxy­ribo­furan­osyl moiety adopts a North sugar pucker (²T₃). The orientation of the exocyclic C—C bond between the –CH₂OH group and the five‐membered ring is ap (gauche, trans). The crystal packing is such that the nucleobases lie parallel to the ac plane; the planes are connected via hydrogen bonds involving the five‐membered ring.     

4,17,25,26‐Tetraaza‐6,9,12,15‐tetra­oxa‐2,19,21,24‐tetrathiatricyclo[18.4.11,4.117,20]hexacosa‐1(25),20(26)‐diene‐3,5,16,18‐tetraone

The title compound, C₁₄H₁₆N₄O₈S₄, has crystallographic C₂ symmetry with half a molecule in the asymmetric unit and a dihedral angle of 58.7 (1)° between the two planar 1,3,4‐thiadiazole five‐membered rings of the macrocyclic, giving the molecule a twisted conformation.     

[N,N′‐Bis­(salicyl­idene)‐1,2‐di­phenyl‐(RS,SR)‐1,2‐ethane­di­amin­ato]­nickel(II)

In crystals of the title compound, [Ni(C₂₈H₂₂N₂O₂)], the coordination geometry around the Ni atom is square planar with a slight tetrahedral distortion. The five‐membered N,N′‐chelate ring adopts a distorted gauche conformation with the two phenyl groups in axial and equatorial orientations.