Influence of pH for the determination of serum albumin by a dye-binding method in the presence of a detergent

In the dye-binding method, the absorbance increase caused by a protein error of a pH indicator is observed only in a restricted pH range. However, this pH range in the presence of a detergent has not yet been examined. Thus, the author investigated the pH (pH(UL)) where the absorbance increase becomes zero by a calculation based on the chemical equilibrium of a protein error of a pH indicator, and by experiments using four sulfonephthalein dyes. The pH(UL) value changed only with the detergent concentration, but did not change at all due to the dye, buffer solution or protein concentrations. Although the pH(UL) value was different according to the kind of dye used, it correlated well with the pK(D) values (dissociation constant) of BPB, BCG, BCP and BTB. The characteristics of pH(UL) in the reactions of the four dyes indicated good agreement with that obtained by a calculation.     

Analysis of the difference in color development in the dye-binding method due to the kind of buffer solution.

In a dye-binding method using a pH indicator, color development has reportedly been affected by the kind of buffer solution used in the color reagent. This phenomenon was analyzed by using a calculation based on the assumption that the anion of the buffer solution also reacts with protein. Color development decreases with increases in the anion concentration of the buffer solution and in the equilibrium constant of the reaction between the anion and protein. The differences in color development due to the kind of buffer solution can be attributed to differences in the equilibrium constant of the reaction forming the anion-protein complex and to the concentration of the anion between the buffer solutions.     

Characteristics of a protein error in determination of serum protein in the presence of inorganic salt.

There is a possibility that the color development of the dye-binding method based on a protein error of a pH indicator is affected by the coexisting inorganic salt. Thus, the author theoretically and experimentally investigated the effect of the inorganic salt on the protein error. In a theoretical analysis, the anion of an inorganic salt, like the dissociated dye and buffer anions, was assumed to react with the protein, forming a colorless anion-protein complex. The calculated results were compared with those obtained by experiments using three pH indicators and various kinds of inorganic salts. The calculated results obtained are as follows: (1) The color development decreases with increasing the concentration of the inorganic salt and the equilibrium constant of the reaction between the inorganic salt and protein; (2) The rate of the absorbance decrease is larger for a lower concentration of the inorganic salt than for a higher one; (3) The larger is the equilibrium constant, the larger is the absorbance decrease. The absorbance decrease was caused by the anion, and was increased by increasing the anion concentration. The magnitude of the effect of the anion was iodide > bromide > chloride, which was associated with their ionic radius. The difference in the effect of the anion was thought to indicate that the equilibrium constant, in other words, the bonding strength of the anion to protein is iodide > bromide > chloride.     

The upper limit pH in the dye-binding method for the determination of serum protein via measurements of the absorbance increase produced by protein error.

In the dye-binding method for determining the albumin concentration, the absorbance increase due to the change of the color shade by protein error of a pH indicator can be measured by a spectrophotometer. This absorbance increase is observed only in a restricted pH region, but this pH region is not theoretically studied yet. Thus, the author investigated the upper limit pH (pHUL) at which the absorbance increase occurs by the theoretical calculation, and compared these results with those obtained experimentally using four pH indicators. The pHUL is not affected by the dye or protein concentrations, or by the formation constant of the dye-protein complex; but the value changes according to the acid-dissociation constant of the dye (KD) and the ratio of the molar absorptivities of the proton-dissociated dye anion (epsilonD) and the dye-protein complex (epsilonPD). The pHUL value can be calculated by the equation, found theoretically. The calculated pHUL values of BPB, BCG, BCP and BTB were 5.1, 4.8, 6.2 and 5.5, respectively. These values correlated with the experimental results of 4.5 for BPB, 4.7 for BCG, 5.9 for BCP and 5.2 for BTB, but were not associated with the pKD values of each dye. The pHUL of these dyes did not change significantly for various dye and protein concentrations, as was expected from the thoretical calculation.     

Guidance for selecting the measurement conditions in the dye-binding method for determining serum protein: theoretical analysis based on the chemical equilibrium of protein error.

A methodology for selecting the measurement conditions in the dye-binding method for determining serum protein has been studied by a theoretical calculation. This calculation was based on the fact that a protein error occurs because of a reaction between the side chains of a positively charged amino acid residue in a protein molecule and a dissociated dye anion. The calculated characteristics of this method are summarized as follows: (1) Although the reaction between the dye and the protein occurs up to about pH 12, a change in the color shade, called protein error, is observed only in a pH region restricted within narrow limits. (2) Although the apparent absorbance (the absorbance of the test solution measured against a reagent blank) is lower than the true absorbance indicated by the formed dye-protein complex, the apparent absorbance correlates with the true absorbance with a correlation coefficient of 1.0. (3) At a higher dye concentration, the calibration curve is more linear at a higher pH than at a lower pH. Most of these characteristics were similarly observed experimentally in the reactions of BPB, BCG and BCP with human and bovine albumins. It is concluded that in order to ensure the linearity of the calibration curve, the measurement should be performed at a higher dye concentration and sufficiently high pH where the detection sensitivity is satisfied.     

Efficient and non-denaturing membrane solubilization combined with enrichment of membrane protein complexes by detergent/polymer aqueous two-phase partitioning for proteome analysis

It is of central interest in membrane proteomics to establish methods that combine efficient solubilization with enrichment of proteins and intact protein complexes. We have investigated the quantitative and qualitative solubilization efficiency of five commercially available detergents using mitochondria from the yeast Saccharomyces cerevisiae as model system. Combining the zwitterionic detergent Zwittergent 3-10 and the non-ionic detergent Triton X-114 resulted in a complementary solubilization of proteins, which was similar to that of the anionic detergent sodium dodecyl sulfate (SDS). The subsequent removal of soluble proteins by detergent/polymer two-phase system partitioning was further enhanced by addition of SDS and increasing pH. A large number of both integral and peripheral membrane protein subunits from mitochondrial membrane protein complexes were identified in the detergent phase. We suggest that the optimized solubilization protocol in combination with detergent/polymer two-phase partitioning is a mild and efficient method for initial enrichment of membrane proteins and membrane protein complexes in proteomic studies.     

Zur Analyse der Sulfobetaine

The analysis of the sulphobetaines is dealt with with special attention to the separation from all other detergents. Contrary to other ampholytic detergents the sulphobetaines are recovered together with the nonionic detergents by using ion-exchange methods. They can be separated from the non-ionic detergents by a thin-layer chromatographic method. The IR- and NMR-spectra allowing the identification are discussed. The quantitative determination of the sulphobetaines cannot be accomplished by means of the methods normally used in detergent analysis. It has to be done with the aid of chemical decomposing reactions by a determination of sulphur.     

The effect of surfactants on the concentration of heavy metals from natural waters on chelex-100 resin

Trace amounts of zinc, cadmium, copper, nickel, manganese, cobalt and lead can be separated from natural waters on Chelex-100 resin (50–100 mesh) in the presence of cationic, anionic and non-ionic detergents, washing powder and sodium tripolyphosphate at concentrations as high as 100 mg l^-1. Metal recoveries are better than 92% but are poor in the presence of soap or the potential detergent additive, nitrilotriacetic acid. Although strong adsorption of cationic, and to a lesser extent, anionic and non-ionic detergents, occurs on the resin surface, low recoveries can be attributed to incomplete metal elution rather than to blockage of adsorption sites. Experiments with radiotracers show that the total metal present in natural waters is not adsorbed by Chelex-100 unless metal ions are first released from colloids or strong complexes.     

Biodegradation of a Keratin Waste and the Concomitant Production of Detergent Stable Serine Proteases from Paecilomyces lilacinus

Paecilomyces lilacinus (LPS 876) efficiently degraded keratin in chicken feather during submerged cultivation producing extracellular proteases. Characterization of crude protease activity was done including its compatibility in commercial detergents. Optimum pH and temperature were 10.0 and 60?°C, respectively. Protease activity was enhanced by Ca²⁺ but was strongly inhibited by PMSF and by Hg²⁺ suggesting the presence of thiol-dependent serine proteases. The crude protease showed extreme stability toward non-ionic (Tween 20, Tween 85, and Triton X-100) and anionic (SDS) surfactants, and relative stability toward oxidizing agent (H₂O₂ and sodium perborate). In addition, it showed excellent stability and compatibility with various solid and liquid commercial detergents from 30 to 50?°C. The enzyme preparation retained more than 95% of its initial activity with solid detergents (Ariel? and Drive?) and 97% of its original activity with a liquid detergent (Ace?) after pre-incubation at 40?°C. The protective effect of polyols (propylene glycol, PEG 4000, and glycerol) on the heat inactivation was also examined and the best results were obtained with glycerol from 50 to 60?°C. Considering its promising properties, P. lilacinus enzymatic preparation may be considered as a candidate for use in biotechnological processes (i.e., as detergent additive) and in the processing of keratinous wastes.     

Use of Ternary Ion-association Color Change on Membrane Filter for Determination of Protein

The dye-binding assay has become an important method for protein analysis,primarily due to its convenience and high sensitivity. Only one simple reagent such as triphenylmethan-dye is required, and color development is generally rapid. The aim of this work is to develop a superior visual method with a high sensitivity for proteins in an aqueous solution. Here we show a novel protein assay based on the membrane filtration of the ternary associates and subsequent color change of the chromophore.     

Membrane protein isolation by in situ solubilization, partitioning and affinity adsorption in aqueous two-phase systems. Purification of the human type 1 11beta-hydroxysteroid dehydrogenase

Recently developed aqueous two-phase systems based on non-ionic detergents and polymers are suitable for the separation of membrane proteins. Moreover, within this relatively membrane protein "friendly" environment, changes in temperature can be controlled and stabilizing agents may be added to ensure integrity of the target protein during isolation. Here, we use aqueous two-phase partitioning for the isolation of membrane bound 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1). Different detergents were used to find optimal conditions regarding solubilization and retaining target protein activity. We explored in situ solubilization by adding detergent directly to the aqueous two-phase system, as well as a batch metal affinity capture step of 6xHis tagged 11beta-HSD1 in the two-phase system. The use of detergent/polymer two-phase systems resulted in a specific enzyme activity of 3840 nmol mg(-1) min(-1) of the target membrane protein compared to a conventional purification protocol where a specific enzyme activity of 1440 nmol mg(-1) min(-1) was achieved.     

Detergent-protein interactions in aqueous buffer suspensions of Photosystem I (PS I)

Systematic and uniform monolayer formation of Photosystem I (PS I) onto self-assembled monolayer (SAM) substrates to enable unidirectional electron transfer is crucial for its successful use in the fabrication of bio-hybrid solid-state electronic or photovoltaic devices. Yet, our recent studies (Mukherjee et al., 2010) indicate that surface self-assembly of PS I from aqueous buffer suspensions onto alkanethiolate SAM/Au substrates frequently leads to complex columnar structures due to solution phase protein aggregations. We investigate the effect of two prototypical non-ionic detergents, n-Dodecyl-β-D-Maltoside (DM) and Triton X-100 (TX-100), on protein-protein interactions via the protein-detergent interfacial chemistry. Dynamic light scattering (DLS) experiments are used to demonstrate the impact of relative protein/detergent concentrations on aggregation dynamics of PS I suspensions. In turn, the surface attachment characteristics of PS I adsorbed from the aforementioned suspensions onto SAM/Au substrate is examined by atomic force (AFM) microscopy. Our results indicate that relative concentration of PS I and detergents (DM or, TX-100) with respect to their critical micelle concentrations (CMC) determines the extent of self-association between PS I complexes driven by the screening induced by detergent micelles and/or, inter-protein distances. Such interfacial phenomena during the PS I-detergent complexation process drives the colloidal system through various regimes of phase separations, suspension and/or, de-aggregation, wherein individual PS I complexes can exist in a frustrated state that prevents favorable orientations for PS I-PS I interactions. The present study presents a novel strategy, heretofore not considered, for tailoring inter-protein distances and protein-protein interactions in solution phase, thereby allowing a superior control on the surface attachment of PS I onto SAM/Au substrates.     

A single step protein assay that is both detergent and reducer compatible: The cydex blue assay

Determination of protein concentration is often an absolute prerequisite in preparing samples for biochemical and proteomic analyses. However, current protein assay methods are not compatible with both reducers and detergents, which are however present simultaneously in most denaturing extraction buffers used in proteomics and electrophoresis, and in particular in SDS electrophoresis. It was found that inclusion of cyclodextrins in a Coomassie blue‐based assay made it compatible with detergents, as cyclodextrins complex detergents in a 1:1 molecular ratio. As this type of assay is intrinsically resistant to reducers, a single‐step assay that is both detergent and reducer compatible was developed. Depending on the type and concentration of detergents present in the sample buffer, either beta‐cyclodextrin or alpha‐cyclodextrin can be used, the former being able to complex a wider range of detergents and the latter being able to complex higher amounts of detergents due to its greater solubility in water. Cyclodextrins are used at final concentrations of 2–10 mg/mL in the assay mix. This typically allows to measure samples containing as little as 0.1 mg/mL protein, in the presence of up to 2% detergent and reducers such as 5% mercaptoethanol or 50 mM DTT in a single step with a simple spectrophotometric assay.     

An accurate method for determining the residual base catalyst in commercial nonionic detergents

Summary A new, sensitive method for determining the concentration of the residual base catalyst present in nonionic detergents is given. It is based on measuring the rate constant of the color fading of malachite green in the presence of the detergent reversed micelles.With 1 figure     

Comparative investigations of the molecular properties of detergents and protein–detergent complexes

Investigations of monomeric and micellar detergents, protein–detergent complexes, as well as native and denatured proteins by means of various physicochemical techniques yield a wide range of molecular characteristics of the components under analysis. Varying the experimental conditions (e.g., the concentration of solutes or the ionic strength of the medium) allows the mass, gross structure, and structural details of the macromolecular components to be determined. However, several modifications of the conventional techniques and evaluation procedures have to be applied in order to analyze multicomponent systems consisting of several low-molecular, micellar, and macromolecular components in an appropriate way. In the case of weakly absorbing detergents, labeling of the detergent micelles by specific dyes is required. Evidently, impurities and lack of homogeneity of many detergents may severely disturb the precise evaluation of the experiments; both necessitate a series of precautions in order to avoid misinterpretations. Analytical ultracentrifugation, size-exclusion chromatography, together with viscometry and densimetry, yield molar masses, mass distributions, and the overall structure of micellar and macromolecular molecules. In contrast, spectroscopic methods (UV absorption, fluorescence emission and excitation, far- and near-UV circular dichroism) monitor only local details of detergent-induced changes in the environment of aromatic residues. The technique of sodium dodecyl sulfate–polyacrylamide gel electrophoresis is routinely applied in biochemical work in order to establish molar masses of simple and conjugated proteins. To study the binding behavior of detergents to proteins in quantitative terms, however, techniques (e.g., equilibrium centrifugation, electrophoresis and chromatography) involving detergent concentrations have to be used. Received: 9 August 1999/Accepted: 19 October 1999     

Ab initio studies of crystalline nitromethane under high pressure

We have studied the mechanical compressibility and band structure of solid nitromethane both in equilibrium and compressed states using Hartree-Fock and density functional theory (DFT) with atom-centered all-electron linear combination of atomic orbitals basis sets. Hartree-Fock calculations with a 6-21G basis set, uncorrected for basis set superposition error, gave the best agreement with experimental compression studies. These results may be due to the cancellation of basis set superposition error with dispersion force errors. The equilibrium DFT band gap is comparable to the lowest-energy feature in electron-impact spectroscopy of nitromethane but underpredicts the optical absorption gap; we interpret these features in terms of the presence of tightly bound excitons. Only minor changes in the gap are observed under hydrostatic compression.     

Dendritic Oligoglycerol Regioisomer Mixtures and Their Utility for Membrane Protein Research

Dendrons are an important class of macromolecules that can be used for a broad range of applications. Recent studies have indicated that mixtures of oligoglycerol detergent (OGD) regioisomers are superior to individual regioisomers for protein extraction. The origin of this phenomenon remains puzzling. Here we discuss the synthesis and characterization of dendritic oligoglycerol regioisomer mixtures and their implementation into detergents. We provide experimental benchmarks to support quality control after synthesis and investigate the unusual utility of OGD regioisomer mixtures for extracting large protein quantities from biological membranes. We anticipate that our findings will enable the development of mixed detergent platforms in the future.     

Excess Gibbs potential model for multicomponent hydrogen clathrates

A new thermodynamic calculation procedure is introduced to predict the equilibrium conditions of multicomponent gas hydrates containing hydrogen. This new approach utilizes an excess Gibbs potential term to account for second- or higher-order water-cavity distortions due to the presence of multiple guest species. The excess Gibbs potential describes changes in reference chemical potentials according to different compositions of guest mixtures in the hydrate phase. To determine the equilibrium conditions of multicomponent gas hydrates, the excess Gibbs potential term is incorporated to the Lee-Holder model along with the Zele-Lee-Holder cell distortion model. For binary gas hydrates between hydrogen and the other gas molecule, the predicted equilibrium pressure deviates within 10-20% from the experimental value. For the ternary and quaternary mixture hydrates, the model prediction is reasonably good but its error increases with increasing pressure and temperature under the presence of THF.     

Comparison of detergents for extraction and ion-exchange high-performance liquid chromatography of Sendai virus membrane proteins.

The integral membrane proteins of Sendai virus, haemagglutinin-neuraminidase (HN) and fusion protein (F) were extracted from purified virions with a non-ionic and two zwitterionic detergents, i.e., pentaethylene glycol monolauryl ether (C12E5), lauryldimethylamine oxide (LDAO) and dodecyldimethylammoniopropane-1-sulphonate (SB12), respectively. The extracts were subjected to ion-exchange high-performance liquid chromatography (HPIEC) using 0.1% of the detergent in the eluent on four different columns (MA7Q, Zorbax BioSeries SAX, Mono Q and PL-SAX) with a quaternary amine as interacting ligand and with different pore sizes: non-porous and 30, 80 nm and 400 nm, respectively. The relative recoveries of protein were similar for all the columns. The highest recovery of HN and F protein and the best separation were obtained with C12E5. Analysis of HPIEC fractions with monoclonal antibodies directed against conformational epitopes showed that C12E5 had less effect on the conformation than the other two detergents.     

Application of high-performance liquid chromatography to the purification of the putative intestinal peptide transporter

A membrane protein of relative molecular mass (Mr) 127,000 was identified by photoaffinity labelling as (a component of) the uptake system for small peptides and beta-lactam antibiotics in rabbit small intestine. This binding protein is a microheterogeneous glycosylated integral membrane protein which could be solubilized with non-ionic detergents and enriched by lectin affinity chromatography on wheat germ lectin agarose. For the final purification of this protein and separation from aminopeptidase N of Mr 127,000, fast protein liquid chromatography (FPLC) was used. Gel permeation, hydroxyapatite and hydrophobic interaction chromatography were not successful for the purification of the 127,000-dalton binding protein. By anion-exchange chromatography on a Mono Q column with either Triton X-100 or n-octylglucoside as detergent, a partial separation of the 127,000-dalton binding protein from aminopeptidase N was achieved. By cation-exchange chromatography on a Mono S HR 5/5 column at pH 4.5 using Triton X-100 as detergent also only a partial separation from aminopeptidase N could be achieved. If, however, Triton X-100 was replaced with n-octylglucoside, the binding protein for beta-lactam antibiotics and small peptides of Mr 127,000 could be completely separated from aminopeptidase N. These results indicate that Triton X-100 should be avoided for the purification of integral membrane proteins because mixed protein-detergent micelles of high molecular weight prevent a separation into the individual membrane proteins. The putative peptide transport protein was finally purified by rechromatography on Mono S and was obtained more than 95% pure as determined densitometrically after sodium dodecyl sulphate gel electrophoresis. By application of FPLC even microheterogeneous membrane glycoproteins from the intestinal mucosa can be purified to such an extent that a sequence analysis and immunohistochemical localization with antibodies prepared from the purified protein is possible.