The Crystal and Molecular Structure of a New Calcium(II) Complex with Pyridine-2,6-DiCarboxylate,Water and Nitrate Ligands

Crystals of {catena-[μ-aqua-O]bis[μ-pyridine-2,6-dicarboxylato-O,N-O']} {[monoaqua-nitrato, O-calcium(II)] [diaqua-calcium(II)]} contain dimeric units composed of two calcium(II) ions and two ligand molecules, in which the calcium ions are bridged by two bidentate oxygen atoms, each donated by one carboxylic group of the ligand. The Ca(II) ion is also coordinated by one oxygen atom of the second carboxylate group and the hetero-ring nitrogen atom belonging to the same ligand molecule. The dimers form molecular chains through protons situated at the symmetry centers halfway between the non-bridging carboxylate oxygen atoms. In addition, both calcium ions in the dimer are bridged to calcium ions in adjacent dimers - each by a pair water oxygen molecules giving rise to two-dimensional molecular sheets. Coordination of the Ca ion in the dimer is completed either by two water oxygen atoms or by one water oxygen atom and an oxygen atom donated by a nitrate group. The molecular sheets are held together by an extended system of hydrogen bonds.     

The Crystal Structures of Two Calcium(II) Complexes with Pyrazine- 2,6-Dicarboxylate and Water Ligands

The structure of catena-{bis[(μ-aqua)(diaqua)(pyrazine-2,6-dicarboxylato-O,N-μ-O')](calcium(II)} consists of dimeric units composed of two calcium(II) ions, two ligand molecules and six water molecules. The calcium ions are bridged by two bidentate oxygen atoms, each donated by one carboxylic group of the ligand. The Ca(II) ion is also coordinated by one oxygen atom of the second carboxylate group and the hetero-ring nitrogen atom belonging to the same ligand molecule. Both calcium ions in a dimer are bridged to the Ca(II) ions in adjacent dimers by a pair of water molecules forming infinite molecular ribbons. In addition, each Ca(II) ion is coordinated by three water molecules; one of them is used for bridging the adjacent dimer. The coordination polyhedron around the Ca(II) ion is a pentagonal bipyramid with two apices above and one apex below the equatorial plane. The same molecular pattern is observed in the structure of catena-{bis[(μ-aqua)(diaqua)(pyrazine-2,6-dicarboxylato-O,N-μ-O')](calcium(II)} dihydrate which, in addition, contains two solvation water molecules per unit cell. In both compounds the molecular ribbons are held together by extended systems of hydrogen bonds.     

Dimeric Molecules in the Crystals of a Calcium(II) Complex with Pyridine-2,6-Dicarboxylate and Water Ligands

The crystals of bis[ w -pyridine-2,6-dicarboxylato-O,N,O')]bis[trisaqua-calcium(II)] di(pyridine-2,6-dicarboxylic acid) contain dimeric molecules composed of two calcium(II) ions and two ligand molecules. Calcium ions are bridged by two bidentate oxygen atoms each donated by one carboxylic group of the ligand [Ca―N 2.467(2)Å], a monodentate oxygen atom of the second carboxylate group of the ligand [Ca―N 2.484(2)Å] and three oxygen atoms donated by the water molecules [mean Ca―O 2.388(2)Å]. The coordination polyhedron is a distorted pentagonal bipyramid. Acid molecules were found to be located in the space between dimers and involved in an extended network of hydrogen bonds.     

POLYMERIC MOLECULAR PATTERN IN THE CRYSTALS OF A CALCIUM(II) COMPLEX WITH PYRIDINE-3,4-DICARBOXYLATE AND WATER LIGANDS

Abstract

Crystals of triaquamono (μ-pyridine-3,4-dicarboxylato-O,O′,O,O′)(aqua-O)calcium(II) contain molecular ribbons in which two adjacent calcium ions are bridged via oxygen atoms donated by the carboxylate group attached to carbon atom “3” in the pyridine ring. Both oxygen atoms are bidentate, each being coordinated to two caloium ions. In addition, every second pair of calcium(II) ions is bridged by a water oxygen atom. The coordination polyhedron around the calcium(II) ion is pentagonal bipyramidal; its equatorial plane is composed of two bridging oxygen atoms each belonging to the carboxylate group of the adjacent ligands, the bridging water oxygen atom and two coordinated water molecules. Another coordinated water oxygen atom constitutes the apex of the pyramid on one side of the pentagon, while two bridging carboxylate oxygen atoms donated by the same carboxylate group make two apices on the other side of the pentagon. The pyridine hetero-ring nitrogen atom does not participate in coordination to the central ion. Both oxygen atoms of the carboxylate group attached to the carbon atom in position “4” of the pyridine ring are not directly coordinated to the calcium(II) ion and act only as acceptors in the hydrogen bond system.     

Two-dimensional molecular pattern in the structure of a calcium(II) complex with pyrazine-2,3-dicarboxylate and water ligands

The structure of di(aquo-O)(pyrazine-2,3-dicarboxylato-N,O; -O′,O′′) calcium(II) hydrate [Ca(2,3-PZDC)(H₂O)₂·;H₂O] contains molecular sheets in which Ca(II) ions are bridged by the carboxylate groups of the ligand molecules. Two bridging paths are evident. In the first, an N,O-bonding moiety formed by a hetero-ring nitrogen atom and the carboxylate oxygen atom nearest to it and both oxygen atoms of the second carboxylic group are active. The second path is formed by the other oxygen atom from the carboxylic group involved in the N,O-bonding moiety and an oxygen atom from the second carboxylic group. The latter atom is bidentate. A two-dimensional molecular pattern is formed. Each Ca(II) ion is also coordinated by two water oxygen atoms, making the number of coordinated atoms eight. The coordination polyhedron is a distorted pentagonal bipyramid with an oxygen atom at the apex on one side of the equatorial plane and two oxygen atoms forming the apices on the other side.     

Catenated polymeric molecular patterns in structures of two calcium(II) complexes with pyridine-2,3-dicarboxylate (quinolinic) and water ligands

The structure of triclinic catena-tetraquo(μ-pyridine-2,3-dicarboxylato-N,O; O′)calcium(II) is composed of two symmetry independent Ca(II) ions and two independent ligand molecules. Each Ca(II) is coordinated by a N,O-bonding moiety of a ligand, four water oxygens, and a carboxylate oxygen donated by an adjacent bridging ligand. The resulting molecular ribbons are propagating in the [010] crystal direction. Both Ca(II) ions are eight coordinate forming a capped pentagonal bipyramidal with strongly distorted pentagonal equatorial planes. Hydrogen bonds between carboxylate oxygens and coordinated waters are responsible for the stability of the structure. The orthorhombic structure of catena-trisaquo[(μ-2, 3-dicarboxypyridin-1-ium-O,O′; O′′) (H pyridine-2,3-dicarboxylato-N,O)]calcium(II) is composed of molecular ribbons in which the bridging of Ca(II) ions occurs through a ligand using one bidentate carboxylate. The other carboxylate of this ligand donates only one O atom to Ca(II), the second remaining inactive. A proton is attached to the hetero-nitrogen. Each Ca(II) is also chelated by a N,O-bonding moiety of a second ligand, which does not bridge and its second carboxylate remains protonated. Three water oxygen atoms complete the coordination around the Ca(II) ion to eight. The resulting coordination polyhedron is a capped pentagonal bipyramid with a strongly distorted equatorial plane. Hydrogen bonds in which coordinated waters act as donors are responsible for the stability of the structure.     

Molecular Chains in the Crystals of a Calcium(II) Complex with Pyridine-3,5-Dicarboxylate (Dinicotinate) and Water Ligands

The crystal of pentaqua (catena-pyridine-3,5-dicarboxylato-O,O) calcium(II) contain zigzag molecular chains composed of Ca ions linked by two bridging oxygen atoms, each donated by one carboxylate group [Ca-O1 2.353(2) Å, Ca-O3^III 2.334(1) Å]. The Ca ions, the ligand molecules and one water oxygen atom coordinated by each metal ion [Ca-O5 2.410(2) Å] are coplanar. The coordination of the Ca ion is completed by four other water oxygen atoms situated above and below the plane of the chain [Ca-O6 2.475(1) Å, Ca-O7 2.371(2) Å]. The coordination number of the calcium(II) ion is seven. The water molecules act as donors in a system of hydrogen bonds.     

Crystal structures of two Ca(II) complexes with imidazole-4,5-dicarboxylate and water ligands

The structure of compound I: poly-diaqua(μ-imidazole-4,5-dicarboxylato-N,O; -O′; -O′′, -O′′′) calcium(II) monohydrate [Ca(C₅H₂N₂O₄)(H₂O)₂·H₂O] is built of molecular sheets in which imidazole-4,5-dicarboxylate ligands bridge the metal ions using both carboxylate groups, each bidentate. Ca(II) is coordinated by six oxygen atoms and one hetero-ring nitrogen atom distributed at the apices of a capped tetragonal bipyramid. The basal plane of the pyramid is formed by two carboxylate oxygen atoms [d(Ca–O2?=?2.374(1)?Å, d(Ca–O4)?=?2.412(1)?Å] and two water oxygen atoms [d(Ca–O5)?=?2.384(1)?Å, d(Ca–O6)?=?2.455(1)?Å], the capped position is occupied by the carboxylate oxygen atom O3 [d(Ca–O3)?=?2.325(1)?Å], the hetero-ring nitrogen atom [d(Ca–N2)?=?2.523(1)?Å] and the carboxylate oxygen atom O4 [d(Ca–O2)?= 2.412(1)?Å] form the apices of the prism. The solvation water molecule plays a significant role in a framework of hydrogen bonds responsible for the stability of the crystal. The structure of compound II: trans-tetraquadi(H-imidazole-4,5-dicarboxylato-N,O) calcium(II) monohydrate, [Ca(C₅H₃N₂O₄)₂(H₂O)₄·H₂O] consists of monomers in which the Ca(II) ion is located on a centre of symmetry. The coordination around the Ca(II) is a strongly deformed pentagonal bipyramidal with the imidazole-4,5-dicarboxylate (4,5-IDA) ligands in the trans arrangement forming a dihedral angle of 68.3°. An imidazole-ring nitrogen atom [d(Ca–N)?=?2.632(2)?Å] and one carboxylate O atom [d(Ca–O)?=?2.531(2)?Å] from each ligand coordinate to the metal ion. The coordination is completed by four water oxygen atoms [d(Ca–O)?=?2.393(2)?Å] and [d(Ca–O)?=?2.367(2)?Å]. The coordinated water molecules act as hydrogen bond donors and acceptors to the unbonded carboxylate oxygen atoms in adjacent monomers giving rise to a three-dimensional molecular network.     

Crystal structure of a calcium(II) complex with pyrazine-2,3-dicarboxylate,nitrate and water ligands

The structure of catena-[tris(aquo-O)(nitrato-O,O′)(µ-hydrogen pyrazine-2,3-dicarboxylato-O,N–O′,N′)calcium(II)][tetra(aquo-O)(μ-hydrogen pyrazine-2,3-dicarboxylato-O,N–O′,N′) calcium(I)] nitrate, {Ca[H(2,3-PZDC)](H₃O)₃(NO₃)}{Ca[H(2,3-PZDC)](H₂O)₄}⁺ (NO₃)^?, is composed of molecular ribbons in which calcium atoms are bridged by both N,O-bonding moieties of singly deprotonated ligand molecules. The hydrogen atom donated by one carboxylic group is linked by a short intramolecular hydrogen bond of 2.37 Å to an oxygen atom of the second carboxylic group of the same ligand. Two crystallographically independent Ca(II) ions exhibit different coordination modes. One is coordinated by two bonding moieties of the bridging ligand molecules, three water oxygen atoms and two oxygen atoms of a nitrate ligand. The other calcium ion is chelated by two bonding moieties donated by the bridging ligand molecules and four water oxygen atoms, forming a positively charged assembly with a nitrate anion located nearby. The coordination polyhedron of the first calcium ion is a strongly deformed bicapped pentagonal bipyramid with nine-coordinated atoms; the second calcium ion is also in a strongly deformed pentagonal bipyramid with one apex on one side of the equatorial plane and two apices on the other. Coordinated water oxygen atoms act as donors in a hydrogen-bond network.     

Three-dimensional polymeric molecular pattern in the structure of a Ca(II) complex with pyrazine-2,3,5,6-tetracarboxylate and water ligands

Triclinic unit cell [space group P 1] of the calcium(II) complex with pyrazine-2,3,5,6-tetracarboxylate (2,3,5,6-PZTC) and water ligands [poly-bis(μ-aqua)di(μ-pyrazine-2,3,5,6-tetracarboxylate)tetracalcium(II)] contains four Ca(II) ions in two symmetry independent sites, two 2,3,5,6-PZTC ligands with their geometrical centers at the inversion centers at 0, 1/2, 1/2 and 0, 1/2, 0 and two coordinated water molecules. Metal ions are bridged by the ligand molecules via their N,O bonding moieties and carboxylate oxygen atoms as well as coordinated water oxygen atoms producing a densely packed three-dimensional molecular pattern. The Ca1 ion coordinates eight atoms at the corners of a distorted bicapped tetragonal bipyramid. The coordination number of the Ca2 ion is seven in a strongly distorted pentagonal bipyramid. The pyrazine ring planes of the ligands are parallel to each other forming molecular sheets stacked normal to the a axis. They are interconnected by carboxylate oxygen atoms coordinating calcium ions located between the adjacent sheets.     

Molecular chains in the structure of a Zinc(Ii) Complex with Pyrazine-2,6-Dicarboxylate and Water Ligands

Crystals of catena-[diaqua-(μ-pyrazine-2,6-dicarboxylato-N,O,O′-μ-N′)]zinc(II) contain molecular chains in which the Zn(II) ions are bridged by pyrazine-2,6-dicarboxylate ligands via two symmetry-related oxygen atoms, each donated by a different carboxylic group [Zn–O(1) and O(1) ^I : 2.182(2)?Å] and the hetero-ring nitrogen atom [Zn–N(1): 2.049(3)?Å] situated between them on one side and the second hetero-ring nitrogen atom [Zn–N(2) ^II 2.118(3)?Å] from the adjacent ligand on the other. The Zn(II) ion and four coordinating atoms are coplanar. Two symmetry related water molecules [Zn–O3 and O: 2.116(2)?Å] situated above and below this plane complete the coordination around the Zn(II) ion to six atoms forming a distorted octahedron.     

The Crystal and Molecular Structures of Pb(II) Complexes with Furan-2-Carboxylate and Furan-3-Carboxylate Ligands

The crystals of Pb(II) 2-furancarboxylate (title compound I) contain tetrameric structural units Pb₄(2-FCA)₈(H₂O₂) in which four Pb(II) ions are bridged by carboxylate oxygen atoms forming a circular moiety. In addition, pairs of Pb(II) ions are bridged by carboxylate oxygen atoms inside this moiety. The molecular pattern observed in Pb(II) 3-furancarboxylate (title compound II) is polymeric. It consists of Pb(3-FCA)₂(H₂O) structural units bridged by carboxylate oxygen atoms donated by the furan-3-carboxylate (3-FCA) ligands which are bidentate, using both their carboxylate oxygen atoms for chelation. The coordination around Pb(II) ions is eightfold and ninefold including, apart from carboxylate oxygen atoms, a water oxygen atom and oxygen atoms donated by the furan rings of the ligand molecules. Hydrogen bonds with the water molecule as the donor operate between adjacent ligand molecules. The stereochemical activity of the lone 6s ² electron pair on the Pb(II) is observed in title compound II.     

MOLECULAR RIBBONS COMPOSED OF CALCIUM(II) IONS BRIDGED BY CARBOXYLATE AND WATER OXYGEN ATOMS IN THE CRYSTALS OF Ca(II) COMPLEX WITH 5-METHYLPYRAZINE-2-CARBOXYLATE LIGANDS

Abstract

Crystals of monoaquo(μ-5-methylpyrazine-2-carboxylato-N,O,O′), (5-methylpyrazine-2-carboxyato-N,O)di(μ-aquo-O,O)calcium(II) contain molecular ribbons in which two adjacent calcium(II) ions are bridged by two bidentate oxygen atoms donated by two ligand molecules on one side and bidentate oxygen atoms of two water molecules on the other. The coordination polyhedron around the Ca(II) ion is a pentagonal bipyramid. The vertices of its pentagonal base are composed of two bridging water oxygen atoms, two carboxylate oxygen atoms of two ligand molecules and a nitrogen atom belonging to one of the bridging ligands. A coordinated water molecule constitutes the apex of the pyramid on one side of the base, while the N, O bonding moiety of a second ligand molecule makes two apices on the other side of the base. The ribbons are held together by a system of hydrogen bonds.     

X-Ray Diffraction Study on Manganese(II) Complexes with Thiophene-2-Carboxylate and Furan-3-Carboxylate Ligands

Abstract

Mn(II) cations in the crystals of trisaquobis(μ-thiophen-2-carboxylato-O,O′)(thiophen-2-carboxylato-O)manganese(II) monohydrate are bridged by oxygen atoms donated by bidentate carboxylic groups of two thiophen-2-carboxylate ligands. In addition, each Mn(II) ion is coordinated by an oxygen atom of a monodentate carboxylic group of this ligand and three oxygen atoms of water molecules. The coordination around the Mn(II) cation is octahedral. The bridging of the ligands results in molecular ribbons propagating in the c-direction of the crystal held together by C?H…O hydrogen bonds. The crystal structure of diaquobis(μ-furan-3-carboxylato-O,O′)di(μ-furan-3-carboxylato-O,O)(μ-aqua-O)manganese(II) consists of dinuclear structural units. In each molecule Mn(II) cations are O,O′ bridged by oxygen atoms of bidentate carboxylic groups of two furan-3-carboxylate ligands and have a water located between the Mn cations. The units are O,O′ bridged to Mn(II) ions located in adjacent units by bidentate oxygen atoms, forming molecular ribbons extending in the c-direction. Octahedral coordination around each Mn(II) ion is completed by two water molecules. The octahedra around two adjacent metal ions in the unit share a common apex - the bridging oxygen atom of the water molecule. The ribbons are held together by C?H…O hydrogen bonds between furan ring oxygen atoms and the carbon atoms of adjacent furan rings.     

Synthesis and spectroscopic and structural characterization of two novel photoactivatable Ca2+ compounds

Two novel photoactivatable Ca(2+) compounds were synthesized to achieve a fast concentration jump of calcium ions in solution; this is of paramount importance for investigating the physiological cellular response. The light-sensitive ligands 4-(2-nitrophenyl)-3,6-dioxaoctane dioic acid (H2L1) and 4-(4,5-dimethoxy-2-nitrophenyl)-3,6-dioxaoctane dioic acid (H2L2) were generated by multistep syntheses, and the corresponding calcium complexes, Ca1 and Ca2, were isolated and characterized. The solution equilibria of H2L1 and H2L2 with Ca2+ were investigated; for both ligands, the formation of a 1:2 Ca2+/ligand species is detected and the complete characterization is presented. The crystal structures of Ca1 and Ca2 were determined. In Ca1 the solid state assembly is attained by a polymeric association of [(CaL1(H2O))2(mu-OH2)] dimeric units. Each calcium ion coordinates four oxygen atoms of one ligand (two ethereal, one carboxylic, and one bridging carboxylic oxygen atom), one water molecule, one bridging water molecule, and a carboxylate group of the other ligand within the dimer. The octacoordination of the metal is completed by an interaction with the adjacent dimeric unit. The crystal structure of the complex Ca2 does not show a polymeric nature, but it is a centrosymmetric dimer. The coordination number of the metal ion is still 8:4 oxygen atoms of the ligand; 3 water molecules; 1 bridging carboxylate group. A preliminary study of the photochemical features of the complexes Ca1 and Ca2 is reported: photoexcitation by a nanosecond pulsed UV laser induces the cleavage of the ligand. This drastically reduces the affinity of the ligand toward Ca2+, which is then released in solution.     

Crystallographic report: A coordination polymer containing [Zn(NO3)(H2O)2(btp)2]+ units bridged by btp ligands (btp = 2,6‐bis(N′‐1,2,4‐triazolyl)pyridine)

A zinc(II) coordination polymer has been formed from Zn(NO₃)₂ and 2,6‐bis(N′‐1,2,4‐triazolyl)pyridine (btp) ligands in which each zinc(II) atom is coordinated by three nitrogen donor atoms from btp and three oxygen donor atoms from a nitrate and two water molecules. Copyright © 2003 John Wiley & Sons, Ltd.     

Unusual co-ordination behaviour of imidazole-4-acetic acid. Synthesis, crystal structure and vibrational studies of one-dimensional co-ordination polymer of zinc(II) with two different ligand forms

This work is devoted to structural and vibrational studies of novel 1D polymeric zinc(II) complex [ZnCl(ia)(Hia)]·H₂O (infinity) [Hia=imidazole-4-acetic acid]. It has been found for the first time that the ia anion is acting as bidentate bridging ligand with N1 and carboxylate oxygen atoms as binding centres. The quasi-tetrahedral coordination polyhedron is completed by one chloride anion and monodentate Hia ligand bonded with zinc(II) cation via carboxylate oxygen atom. The compound crystallise in the triclinic P space group with Z=2. The polymer chains are held together by hydrogen bonding network involving the N---H and carboxylate groups, chloride ions and water molecules. The differences between normal vibrations of two ligand forms present in the complex are discussed on the basis of the density functional calculations (DFT) performed for natural and N-deuterated isotopomers. The assignment of the observed MIR and Raman bands is given in terms of potential energy distribution (PED).     

The synthesis and structure of a novel 1D copper(II) weak coordination polymer with 2,6-pyridinedicarboxylic acid

A novel copper complex, [Cu(dipic)(H₂O)₂] _n (H₂dipic?=?2,6-pyridinedicarboxylic acid), was synthesized and its crystal structure determined by X-ray diffraction. The complex has a polymeric structure of infinite one-dimensional (1D) zigzag chains, consisting of six-coordinate Cu(II) units. Each copper(II) ion is in a distorted octahedral environment with a CuNO₅ core: two oxygen atoms and one nitrogen atom from one dipic anion, one oxygen atom from an adjacent dipic ligand and two oxygen atoms from coordinated water. Each dipic anion connects two copper ions via a μ₂-oxygen atom. The zigzag 1D-chains are linked by extensive hydrogen bonds to form 2D infinite sheets.     

A Three—Dimensional Lead(II) Polymer with Bridging Saccharinate and Unusually Coordinated Acetate Ligands — Synthesis,IR Spectra,and Crystal Structure of [Pb(H2O)(μ‐OAc)(μ‐sac)]n

The complex [Pb(H₂O)(μ‐OAc)(μ‐sac)]n with acetate (OAc) and saccharinate (sac) ligands was characterized by IR, elemental analysis and X‐ray crystallography. The mixed‐anion lead(II) complex crystallizes in the triclinic crystal system with the space group of P1¯. The single crystal X‐ray analysis shows that the complex is a coordination polymer in which the lead(II) ions have a highly distorted pentagonal bipyramidal coordination geometry. Lead(II) ions are bridged by carboxylate groups in a zigzag arrangement forming one‐dimensional infinite chains, which are also linked by sac bridges and aromatic π‐π contacts between the adjacent phenyl rings of sac ligands, resulting in a three‐dimensional network. One water molecule coordinates the lead(II) ion and also forms weak hydrogen bonds with the sulfonyl oxygen atoms of the neighboring sac ligands. The sac ligand acts as a bridging ligand through the nitrogen and carbonyl oxygen atoms, while the carboxylate moiety of the acetate ligand shows an unusual (bidentate, and bridging) coordination behaviour, which was observed for the first time in the structure.     

A New Polymer of Mixed‐Anions Complex [Pb(phen)(O2CCH3)(O2NO)]n (phen = 1,10‐phenanthroline)

The single crystal X‐ray data of a mixed anions complex of Pb^II with 1,10‐Phenantroline, [Pb(phen)(O₂CCH₃)‐ (O₂NO)], shows the complex to be polymeric as a result of acetate ligand bridging. The Pb atom has an asymmetrical eightfold coordination of two nitrogen atoms of the 1,10‐phenanthroline ligand and six oxygen atoms of the nitrate and acetate anions. The arrangement of the 1,10‐phenantroline ligand, acetate and nitrate anions suggest a gap in the coordination around the Pb^II ion, occupied possibly by a stereoactive lone pair of electrons on lead(II) where the coordination around the lead atoms is hemidirected. There is a π‐π stacking interaction between the parallel aromatic rings of an adjacent chain in the compound which might help to increase the ‘gap' in the coordination around the Pb^II ion.