Cooperativity between the Halogen Bond and the Hydrogen Bond in H3N⋅⋅⋅XY⋅⋅⋅HF Complexes (X,Y=F,Cl, Br)

Ab initio calculations are used to provide information on H₃N???XY???HF triads (X, Y=F, Cl, Br) each having a halogen bond and a hydrogen bond. The investigated triads include H₃N???Br₂‐HF, H₃N???Cl₂???HF, H₃N???BrCI???HF, H₃N???BrF???HF, and H₃N???ClF???HF. To understand the properties of the systems better, the corresponding dyads are also investigated. Molecular geometries, binding energies, and infrared spectra of monomers, dyads, and triads are studied at the MP2 level of theory with the 6‐311++G(d,p) basis set. Because the primary aim of this study is to examine cooperative effects, particular attention is given to parameters such as cooperative energies, many‐body interaction energies, and cooperativity factors. The cooperative energy ranges from ?1.45 to ?4.64 kcal mol^?1, the three‐body interaction energy from ?2.17 to ?6.71 kcal mol^?1, and the cooperativity factor from 1.27 to 4.35. These results indicate significant cooperativity between the halogen and hydrogen bonds in these complexes. This cooperativity is much greater than that between hydrogen bonds. The effect of a halogen bond on a hydrogen bond is more pronounced than that of a hydrogen bond on a halogen bond.     

Resonance Character of Copper/Silver/Gold Bonding in Small Molecule⋅⋅⋅MX (X=F,Cl, Br,CH3, CF3) Complexes

The resonance character of Cu/Ag/Au bonding is investigated in B???M?X (M=Cu, Ag, Au; X=F, Cl, Br, CH₃, CF₃; B=CO, H₂O, H₂S, C₂H₂, C₂H₄) complexes. The natural bond orbital/natural resonance theory results strongly support the general resonance‐type three‐center/four‐electron (3c/4e) picture of Cu/Ag/Au bonding, B:M?X?B⁺?M:X^?, which mainly arises from hyperconjugation interactions. On the basis of such resonance‐type bonding mechanisms, the ligand effects in the more strongly bound OC???M?X series are analyzed, and distinct competition between CO and the axial ligand X is observed. This competitive bonding picture directly explains why CO in OC???Au?CF₃ can be readily replaced by a number of other ligands. Additionally, conservation of the bond order indicates that the idealized relationship b_B???M+b_MX=1 should be suitably generalized for intermolecular bonding, especially if there is additional partial multiple bonding at one end of the 3c/4e hyperbonded triad.     

[N⋅⋅⋅I+⋅⋅⋅N] Halogen‐Bonded Dimeric Capsules from Tetrakis(3‐pyridyl)ethylene Cavitands

Two [N???I⁺???N] halogen‐bonded dimeric capsules using tetrakis(3‐pyridyl)ethylene cavitands with different lower rim alkyl chains are synthesized and analyzed in solution and the gas phase. These first examples of symmetrical dimeric capsules making use of the iodonium ion (I⁺) as the main connecting module are characterized by ¹H NMR spectroscopy, diffusion ordered NMR spectroscopy (DOSY), electrospray ionization mass spectrometry (ESI‐MS), and ion mobility‐mass spectrometry (TW‐IMS) experiments. The synthesis and effective halogen‐bonded dimerization proceeds through analogous dimeric capsules with [N???Ag⁺???N] binding motifs as the intermediates as evidenced by the X‐ray structures of (CH₂Cl₂)₂@[ 3 a ₂?Ag₄?(H₂O)₂?OTs₄] and (CH₂Cl₂)₂@[ 3 a ₂?Ag₄?(H₂O)₄?OTs₄], two structurally different capsules.     

Strong N−X⋅⋅⋅O−N Halogen Bonds: A Comprehensive Study on N‐Halosaccharin Pyridine N‐Oxide Complexes

A study of the strong N?X???^?O?N⁺ (X=I, Br) halogen bonding interactions reports 2×27 donor×acceptor complexes of N‐halosaccharins and pyridine N‐oxides (PyNO). DFT calculations were used to investigate the X???O halogen bond (XB) interaction energies in 54 complexes. A simplified computationally fast electrostatic model was developed for predicting the X???O XBs. The XB interaction energies vary from ?47.5 to ?120.3 kJ mol^?1; the strongest N?I???^?O?N⁺ XBs approaching those of 3‐center‐4‐electron [N?I?N]⁺ halogen‐bonded systems (ca. 160 kJ mol^?1). ¹H NMR association constants (K_XB) determined in CDCl₃ and [D₆]acetone vary from 2.0×10⁰ to >10⁸ m ^?1 and correlate well with the calculated donor×acceptor complexation enthalpies found between ?38.4 and ?77.5 kJ mol^?1. In X‐ray crystal structures, the N‐iodosaccharin‐PyNO complexes manifest short interaction ratios (R_XB) between 0.65–0.67 for the N?I???^?O?N⁺ halogen bond.     

The Prominent Enhancing Effect of the Cation–π Interaction on the Halogen–Hydride Halogen Bond in M1⋅⋅⋅C6H5X⋅⋅⋅HM2

We designed M¹???C₆H₅X???HM² (M¹=Li⁺, Na⁺; X=Cl, Br; M²=Li, Na, BeH, MgH) complexes to enhance halogen–hydride halogen bonding with a cation–π interaction. The interaction strength has been estimated mainly in terms of the binding distance and the interaction energy. The results show that halogen–hydride halogen bonding is strengthened greatly by a cation–π interaction. The interaction energy in the triads is two to six times as much as that in the dyads. The largest interaction energy is ?8.31 kcal mol^?1 for the halogen bond in the Li⁺???C₆H₅Br???HNa complex. The nature of the cation, the halogen donor, and the metal hydride influence the nature of the halogen bond. The enhancement effect of Li⁺ on the halogen bond is larger than that of Na⁺. The halogen bond in the Cl donor has a greater enhancement than that in the Br one. The metal hydride imposes its effect in the order HBeH<HMgH<HNa<HLi for the Cl complex and HBeH<HMgH<HLi<HNa for the Br complex. The large cooperative energy indicates that there is a strong interplay between the halogen–hydride halogen bonding and the cation–π interaction. Natural bond orbital and energy decomposition analyses indicate that the electrostatic interaction plays a dominate role in enhancing halogen bonding by a cation–π interaction.     

Influence of the Li⋅⋅⋅π Interaction on the H/X⋅⋅⋅π Interactions in HOLi⋅⋅⋅C6H6⋅⋅⋅HOX/XOH (X=F,Cl, Br,I) Complexes

The influences of the Li???π interaction of C₆H₆???LiOH on the H???π interaction of C₆H₆???HOX (X=F, Cl, Br, I) and the X???π interaction of C₆H₆???XOH (X=Cl, Br, I) are investigated by means of full electronic second‐order Møller–Plesset perturbation theory calculations and “quantum theory of atoms in molecules” (QTAIM) studies. The binding energies, binding distances, infrared vibrational frequencies, and electron densities at the bond critical points (BCPs) of the hydrogen bonds and halogen bonds prove that the addition of the Li???π interaction to benzene weakens the H???π and X???π interactions. The influences of the Li???π interaction on H???π interactions are greater than those on X???π interactions; the influences of the H???π interactions on the Li???π interaction are greater than X???π interactions on Li???π interaction. The greater the influence of Li???π interaction on H/X???π interactions, the greater the influences of H/X???π interactions on Li???π interaction. QTAIM studies show that the intermolecular interactions of C₆H₆???HOX and C₆H₆???XOH are mainly of the π type. The electron densities at the BCPs of hydrogen bonds and halogen bonds decrease on going from bimolecular complexes to termolecular complexes, and the π‐electron densities at the BCPs show the same pattern. Natural bond orbital analyses show that the Li???π interaction reduces electron transfer from C₆H₆ to HOX and XOH.     

Structure of Amido Pyridinium Betaines: Persistent Intermolecular C−H⋅⋅⋅N Hydrogen Bonding in Solution

A hydrogen bond of the type C?H???X (X=O or N) is known to influence the structure and function of chemical and biological systems in solution. C?H???O hydrogen bonding in solution has been extensively studied, both experimentally and computationally, whereas the equivalent thermodynamic parameters have not been enumerated experimentally for C?H???N hydrogen bonds. This is, in part, due to the lack of systems that exhibit persistent C?H???N hydrogen bonds in solution. Herein, a class of molecule based on a biologically active norharman motif that exhibits unsupported intermolecular C?H???N hydrogen bonds in solution has been described. A pairwise interaction leads to dimerisation to give bond strengths of about 7 kJ mol^?1 per hydrogen bond, which is similar to chemically and biologically relevant C?H???O hydrogen bonding. The experimental data is supported by computational work, which provides additional insight into the hydrogen bonding by consideration of electrostatic and orbital interactions and allowed a comparison between calculated and extrapolated NMR chemical shifts.     

Cation–Cation Pairing by NCH⋅⋅⋅O Hydrogen Bonds

The pairing of ions of opposite charge is a fundamental principle in chemistry, and is widely applied in synthesis and catalysis. In contrast, cation–cation association remains an elusive concept, lacking in supporting experimental evidence. While studying the structure and properties of 4‐oxopiperidinium salts [OC₅H₈NH₂]X for a series of anions X^? of decreasing basicity, we observed a gradual self‐association of the cations, concluding in the formation of an isolated dicationic pair. In 4‐oxopiperidinium bis(trifluoromethylsulfonyl)amide, the cations are linked by N? H???O?C hydrogen bonds to form chains, flanked by hydrogen bonds to the anions. In the tetra(perfluoro‐tert‐butoxy)aluminate salt, the anions are fully separated from the cations, and the cations associate pairwise by N? C? H???O?C hydrogen bonds. The compounds represent the first genuine examples of self‐association of simple organic cations based merely on hydrogen bonding as evidenced by X‐ray structure analysis, and provide a paradigm for an extension of this class of compounds.     

CH⋅⋅⋅N Hydrogen‐Bonding Interaction in 7‐Azaindole:CHX3 (X=F,Cl) Complexes

The C?H???Y (Y=hydrogen‐bond acceptor) interactions are somewhat unconventional in the context of hydrogen‐bonding interactions. Typical C?H stretching frequency shifts in the hydrogen‐bond donor C?H group are not only small, that is, of the order of a few tens of cm^?1, but also bidirectional, that is, they can be red or blue shifted depending on the hydrogen‐bond acceptor. In this work we examine the C?H???N interaction in complexes of 7‐azaindole with CHCl₃ and CHF₃ that are prepared in the gas phase through supersonic jet expansion using the fluorescence depletion by infra‐red (FDIR) method. Although the hydrogen‐bond acceptor, 7‐azaindole, has multiple sites of interaction, it is found that the C?H???N hydrogen‐bonding interaction prevails over the others. The electronic excitation spectra suggest that both complexes are more stabilized in the S₁ state than in the S₀ state. The C?H stretching frequency is found to be red shifted by 82 cm^?1 in the CHCl₃ complex, which is the largest redshift reported so far in gas‐phase investigations of 1:1 haloform complexes with various substrates. In the CHF₃ complex the observed C?H frequency is blue shifted by 4 cm^?1. This is at variance with the frequency shifts that are predicted using several computational methods; these predict at best a redshift of 8.5 cm^?1. This discrepancy is analogous to that reported for the pyridine‐CHF₃ complex [W. A. Herrebout, S. M. Melikova, S. N. Delanoye, K. S. Rutkowski, D. N. Shchepkin, B. J. van der Veken, J. Phys. Chem. A­ 2005 , 109, 3038], in which the blueshift is termed a pseudo blueshift and is shown to be due to the shifting of levels caused by Fermi resonance between the overtones of the C?H bending and stretching modes. The dissociation energies, (D₀), of the CHCl₃ and CHF₃ complexes are computed (MP2/aug‐cc‐pVDZ level) as 6.46 and 5.06 kcal mol^?1, respectively.     

A Crystallographic Charge Density Study of the Partial Covalent Nature of Strong N⋅⋅⋅Br Halogen Bonds

The covalent nature of strong N?Br???N halogen bonds in a cocrystal ( 2 ) of N‐bromosuccinimide ( NBS ) with 3,5‐dimethylpyridine ( lut ) was determined from X‐ray charge density studies and compared to a weak N?Br???O halogen bond in pure crystalline NBS ( 1 ) and a covalent bond in bis(3‐methylpyridine)bromonium cation (in its perchlorate salt ( 3 ). In 2 , the donor N?Br bond is elongated by 0.0954 Å, while the Br???acceptor distance of 2.3194(4) is 1.08 Å shorter than the sum of the van der Waals radii. A maximum electron density of 0.38 e Å^?3 along the Br???N halogen bond indicates a considerable covalent contribution to the total interaction. This value is intermediate to 0.067 e Å^?3 for the Br???O contact in 1 , and approximately 0.7 e Å^?3 in both N?Br bonds of the bromonium cation in 3 . A calculation of the natural bond order charges of the contact atoms, and the σ*(N1?Br) population of NBS as a function of distance between NBS and lut , have shown that charge transfer becomes significant at a Br???N distance below about 3 Å.     

OH⋅⋅⋅N and CH⋅⋅⋅O Hydrogen Bonds Control Hydration of Pivotal Tropane Alkaloids: Tropinone⋅⋅⋅H2O Complex

The effect of monohydration in equatorial/axial isomerism of the common motif of tropane alkaloids is investigated in a supersonic expansion by using Fourier‐transform microwave spectroscopy. The rotational spectrum reveals the equatorial isomer as the dominant species in the tropinone???H₂O complex. The monohydrated complex is stabilized primarily by a moderate O?H???N hydrogen bond. In addition, two C?H???O weak hydrogen bonds also support this structure, blocking the water molecule and avoiding any molecular dynamics in the complex. The water molecule acts as proton donor and chooses the ternary amine group over the carbonyl group as a proton acceptor. The experimental work is supported by theoretical calculations; the accuracy of the B3LYP, M06‐2X, and MP2 methods is also discussed.     

The nido‐Cage⋅⋅⋅π Bond: A Non‐covalent Interaction between Boron Clusters and Aromatic Rings and Its Applications

Non‐covalent interactions involving multicenter multielectron skeletons such as boron clusters are rare. Now, a non‐covalent interaction, the nido‐cage???π bond, is discovered based on the boron cluster C₂B₉H₁₂^? and an aromatic π system. The X‐ray diffraction studies indicate that the nido‐cage???π bonding presents parallel‐displaced or T‐shaped geometries. The contacting distance between cage and π ring varies with the type and the substituent of the aromatic ring. Theoretical calculations reveal that this nido‐cage???π bond shares a similar nature to the conventional anion???π or π???π bonds found in classical aromatic ring systems. This nido‐cage???π interaction induces variable photophysical properties such as aggregation‐induced emission and aggregation‐caused quenching in one molecule. This work offers an overall understanding towards the boron cluster‐based non‐covalent bond and opens a door to investigate its properties.     

Experimental and theoretical study of the intramolecular C–H···N and C–H···S hydrogen bonding effects in the 1H and 13C NMR spectra of the 2‐(alkylsulfanyl)‐5‐amino‐1‐vinylpyrroles: a particular state of amine nitrogen

In the ¹H NMR spectra of the 1‐vinylpyrroles with amino‐ and alkylsulfanyl groups in 5 and 2 positions, an extraordinarily large difference between resonance positions of the H_A and H_B terminal methylene protons of the vinyl group is discovered. Also, the one‐bond ¹J(C_β,H_B) coupling constant is surprisingly greater than the ¹J(C_β,H_A) coupling constant in pyrroles under investigation, while in all known cases, there was a reverse relationship between these coupling constants. These spectral anomalies are substantiated by quantum chemical calculations. The calculations show that the amine nitrogen lone pair is removed from the conjugation with the π‐system of the pyrrole ring so that it is directed toward the H_B hydrogen. These factors are favorable to the emergence of the intramolecular C–H_B???N hydrogen bonding in the s‐cis(N) conformation. On the other hand, the spatial proximity of the sulfur to the H_B hydrogen provides an opportunity of the intramolecular C–H_B???S hydrogen bonding in the s‐cis(S) conformation. Presence of the hydrogen bond critical points as well as ring critical point for corresponding chelate ring revealed by a quantum theory of atoms in molecules (QTAIM) approach confirms the existence of the weak intramolecular C–H???N and C–H???S hydrogen bonding. Therefore, an unusual high‐frequency shift of the H_B signal and the increase in the ¹J(C_β,H_B) coupling constant can be explained by the effects of hydrogen bonding. Copyright © 2013 John Wiley & Sons, Ltd.     

Preparing Gold(I) for Interactions with Proton Donors: The Elusive [Au]⋅⋅⋅HO Hydrogen Bond

MP2 and DFT calculations with correlation consistent basis sets indicate that isolated linear anionic dialkylgold(I) complexes form moderately strong (ca. 10 kcal mol^?1) Au???H hydrogen bonds with single H₂O molecules as donors in the absence of sterically demanding substituents. Relativistic effects are critically important in the attraction. Such bonds are significantly weaker in neutral, strong σ‐donor N‐heterocyclic carbene (NHC) complexes (ca. 5 kcal mol^?1). The overall association (>11 kcal mol^?1), however, is strengthened by co‐operative, synergistic classical hydrogen bonding when the NHC ligands bear NH units. Further manipulation of the interaction by ligands positioned trans to the carbene, is possible.     

Heterolytic Cleavage of Hydrogen by an Iron Hydrogenase Model: An Fe‐H⋅⋅⋅H‐N Dihydrogen Bond Characterized by Neutron Diffraction

Hydrogenase enzymes in nature use hydrogen as a fuel, but the heterolytic cleavage of H? H bonds cannot be readily observed in enzymes. Here we show that an iron complex with pendant amines in the diphosphine ligand cleaves hydrogen heterolytically. The product has a strong Fe‐H???H‐N dihydrogen bond. The structure was determined by single‐crystal neutron diffraction, and has a remarkably short H???H distance of 1.489(10) Å between the protic N‐H^δ+ and hydridic Fe‐H^δ? part. The structural data for [CpFe H (P^tBu₂N^tBu₂ H )]⁺ provide a glimpse of how the H? H bond is oxidized or generated in hydrogenase enzymes. These results now provide a full picture for the first time, illustrating structures and reactivity of the dihydrogen complex and the product of the heterolytic cleavage of H₂ in a functional model of the active site of the [FeFe] hydrogenase enzyme.     

Theoretical Investigation on the Effect of Different Nitrogen Donors on Intramolecular Se⋅⋅⋅N Interactions

The effect of different donor nitrogen atoms on the strength and nature of intramolecular Se ??? N interactions is evaluated for organoselenium compounds having N,N‐dimethylaminomethyl (dime), oxazoline (oxa) and pyridyl (py) substituents. Quantum chemical calculations on three series of compounds [2‐(dime)C₆H₄SeX ( 1 a – g ), 2‐(oxa)C₆H₄SeX ( 2 a – g ), 2‐(py)C₆H₄SeX ( 3 a – g ); X=Cl, Br, OH, CN, SPh, SePh, CH₃] at the B3LYP/6‐31G(d) level show that the stability of different conformers depends on the strength of intramolecular nonbonded Se ??? N interactions. Natural bond orbital (NBO), NBO deletion and atoms in molecules (AIM) analyses suggest that the nature of the Se ??? N interaction is predominantly covalent and involves nN→σ*_{Se? X} orbital interaction. In the three series of compounds, the strength of the Se ??? N interaction decreases in the order 3 > 2 > 1 for a particular X, and it decreases in the order Cl>Br>OH>SPh≈CN≈SePh>CH₃ for all the three series 1 – 3 . However, further analyses suggest that the differences in strength of Se ??? N interaction in 1 – 3 is predominantly determined by the distance between the Se and N atoms, which in turn is an outcome of specific structures of 1 , 2 and 3 , and the nature of the donor nitrogen atoms involved has very little effect on the strength of Se ??? N interaction. It is also observed that Se ??? N interaction becomes stronger in polar solvents such as CHCl₃, as indicated by the shorter r_{Se ??? N} and higher E_{Se ??? N} values in CHCl₃ compared to those observed in the gas phase.     

Design and Synthesis of Calixarene‐Based Bis‐alkynyl‐Bridged Dinuclear AuI Isonitrile Complexes as Luminescent Ion Probes by the Modulation of Au⋅⋅⋅Au Interactions

Two calixarene‐based bis‐alkynyl‐bridged Au^I isonitrile complexes with two different crown ether pendants, [{calix[4]arene‐(OCH₂CONH‐C₆H₄C≡C)₂}{Au(CNR)}₂] (R=benzo[15]crown‐5 ( 1 ); R=benzo[18]crown‐6 ( 2 )), together with their related crown‐free analogue 3 (R=C₆H₃(OMe)₂‐3,4) and a mononuclear gold(I) complex 4 with benzo[15]crown‐5 pendant, have been designed and synthesized, and their photophysical properties have been studied. The X‐ray structure of the ligand, calix[4]arene‐(OCH₂CONH‐C₆H₄C?CH)₂ has been determined. The cation‐binding properties of these complexes with various metal ions have been studied using UV/Vis, emission, ¹H NMR, and ESI‐MS techniques, and DFT calculations. A new low‐energy emission band associated with Au???Au interaction could be switched on upon formation of the metal ion‐bound adduct in a sandwich fashion.     

Interplay between Metal⋅⋅⋅π Interactions and Hydrogen Bonds: Some Unusual Synergetic Effects of Coinage Metals and Substituents

The ternary systems of C₂H₄ (C₂H₂ or C₆H₆)‐MCN‐HF (M=Cu, Ag, Au) and the respective binary systems were investigated to study the interplay between metal???π interactions and hydrogen bonds. The metal???π interactions in C₂H₄‐MCN become stronger with the irregular order Ag<Cu<Au, while the hydrogen bonds in MCN‐HF become weaker following the same order. The metal???π interactions are weakened as the H atoms in the π system are replaced with electron‐withdrawing groups and enhanced by electron‐donating groups. Type 1 of these ternary systems, in which MCN acts as Lewis base and acid simultaneously, is more stable than type 2, in which C₂H₄ acts as a double Lewis base. Negative cooperativity is present in type 2 ternary systems with a weakening of the metal???π interactions and the hydrogen bonds. Positive cooperativity is found in type 1 ternary systems with an enhancement of the metal???π interactions and the hydrogen bonds, except for C₂(CN)₄‐AuCN‐HF‐1. The weaker metal???π interaction in C₆H₆‐AuCN has a greater enhancing effect on the hydrogen bond in AuCN‐HF than those in C₂H₄‐AuCN and C₂H₂‐AuCN. These synergetic effects were analyzed with the natural bond orbital and energy decomposition.     

(8‐Dimethylamino‐1‐naphthyl)dimethylammonium 3‐carboxy‐1,4,5,‐6,7,7‐hexachlorobicyclo[2.2.1]hept‐5‐ene‐2‐carboxylate hydrate

The structure of the title compound, C₁₄H₁₉N₂⁺·C₉H₃Cl₆O₄^?·H₂O, consists of singly ionized 1,4,5,6,7,7‐hexachlorobicyclo[2.2.1]hept‐5‐ene‐2,3‐dicarboxylic acid anions and protonated 1,8‐bis(dimethylamino)naphthalene cations. In the (8‐dimethylamino‐1‐napthyl)dimethylammonium cat­ion, a strong disordered intramolecular hydrogen bond is formed with N?N = 2.589 (3) Å. The geometry and occupancy obtained in the final restrained refinement suggest that the disordered hydrogen bond may be asymmetric. Water mol­ecules link the anion dimers into infinite chains via hydrogen bonding.