Specific and nonspecific interaction forces between Escherichia coli and silicon nitride, determined by poisson statistical analysis

The nature of the physical interactions between Escherichia coli JM109 and a model surface (silicon nitride) was investigated in water via atomic force microscopy (AFM). AFM force measurements on bacteria can represent the combined effects of van der Waals and electrostatic forces, hydrogen bonding, steric interactions, and perhaps ligand-receptor type bonds. It can be difficult to decouple these forces into their individual components since both specific (chemical or short-range forces such as hydrogen bonding) and nonspecific (long-range colloidal) forces may be present in the overall profiles. An analysis is presented based on the application of Poisson statistics to AFM adhesion data, to decouple the specific and nonspecific interactions. Comparisons with classical DLVO theory and a modified form of a van der Waals expression for rough surfaces were made in order to help explain the nature of the interactions. The only specific forces in the system were due to hydrogen bonding, which from the Poisson analysis were found to be -0.125 nN. The nonspecific forces of 0.155 nN represent an overall repulsive interaction. These nonspecific forces are comparable to the forces calculated from DLVO theory, in which electrostatic-double layer interactions are added to van der Waals attractions calculated at the distance of closest approach, as long as the van der Waals model for "rough" spherical surfaces is used. Calculated electrostatic-double layer and van der Waals interactions summed to 0.116 nN. In contrast, if the classic (i.e., smooth) sphere-sphere model was used to predict the van der Waals forces, the sum of electrostatic and van der Waals forces was -7.11 nN, which appears to be a large overprediction. The Poisson statistical analysis of adhesion forces may be very useful in applications of bacterial adhesion, because it represents an easy way to determine the magnitude of hydrogen bonding in a given system and it allows the fundamental forces to be easily broken into their components.     

The protein "glass" transition and the role of the solvent

Hydrated proteins undergo a change in their dynamical properties in the neighborhood of a temperature. The change of dynamics has been likened to glass transition of glass-forming substances because similar properties were found. However, a complete understanding of the conformation fluctuations of hydrated proteins and their relation to the dynamics of the solvent is still not available, possibly due to the protein molecules being more complex than ordinary glass-formers. For this reason, we turn our attention to the experimental findings of the dynamics of mixtures of water with simpler glass-formers (small molecules and polymers). Two major relaxation processes have been observed in these aqueous mixtures. One is the structural alpha-relaxation of the hydrophilic glass-former hydrogen bonded to the water, which is responsible for glass transition. The other one is the local secondary beta-relaxation of water in the mixture. Remarkably, these two relaxation processes in aqueous mixtures have analogues in hydrated proteins with the same properties. The conformation fluctuations of the protein and the relaxation of the solvent in hydrated proteins behave like the alpha-relaxation of the hydrophilic glass-former hydrogen bonded to the water and the beta-relaxation of water in other aqueous mixtures, respectively. At low temperatures, the Arrhenius activation energy of the relaxation time of the solvent in a hydrated protein is almost the same as that of the beta-relaxation of water in the glassy states of aqueous mixtures. The Arrhenius T-dependence of the solvent relaxation times no longer holds at temperatures that exceed the "glass" transition temperature of the hydrated protein, defined as the temperature at which the conformation relaxation time is very long. This behavior of the solvent in hydrated proteins is similar to that found in the beta-relaxation of water in aqueous mixtures when crossing the glass transition temperature of the mixture (Capaccioli, S.; Ngai, K. L.; Shinyashiki, N. J. Phys. Chem. B 2007, 111, 8197). Furthermore, the same dynamics were found in mixtures of two van der Waals glass-formers, which are even simpler systems than aqueous mixtures because of the absence of hydrogen bonding. The experimental data of these ideal mixtures of van der Waals glass-formers have been given a satisfactory theoretical explanation. Since the properties of hydrated proteins, aqueous mixtures, and the mixtures of van der Waals liquids are similar, we transfer the theoretical understanding gained in the study of the last system sequentially to the two other increasingly more complex systems.     

Density-scaling and the Prigogine-Defay ratio in liquids

The term "strongly correlating liquids" refers to materials exhibiting near proportionality of fluctuations in the potential energy and the virial pressure, as seen in molecular dynamics simulations of liquids whose interactions are comprised primarily of van der Waals forces. Recently it was proposed that the Prigogine-Defay ratio, Π, of strongly correlating liquids should fall close to unity. We verify this prediction herein by showing that the degree to which relaxation times are a function T/ρ(γ), the ratio of temperature to density with the latter raised to a material constant (a property inherent to strongly correlating liquids) is reflected in values of Π closer to unity. We also show that the dynamics of strongly correlating liquids are governed more by density than by temperature. Thus, while Π may never strictly equal 1 for the glass transition, it is approximately unity for many materials, and thus can serve as a predictor of other dynamic behavior. For example, Π ? 1 is indicative of additional control parameters besides T/ρ(γ).     

Voids, generic van der Waals equation of state, and transport coefficients of liquids

In this Perspective, we discuss the role of voids in transport processes in liquids and the manner in which the concept of voids enters the generic van der Waals equation of state and the modified free volume theory. The density fluctuation theory is then discussed and we show how the density fluctuation theory can be made a molecular theory with the help of the modified free volume theory and the generic van der Waals equation of state. The confluence of the aforementioned three theories makes it possible to calculate the transport coefficients of liquids by using the information on the equilibrium pair correlation function, which can be calculated either by an integral equation theory or Monte Carlo simulations. A number of relations between transport coefficients are also presented, which are derived on the basis of the density fluctuation theory. Since they can be used to obtain one transport coefficient from another they can be very useful in handling experimental and theoretical data. An application of the modified free volume theory to polymer melts is discussed as an example for a theory of transport properties of complex liquids.     

Dynamics in supercooled ionic organic liquids and mode coupling theory analysis

Optically heterodyne-detected optical Kerr effect experiments are applied to study the orientational dynamics of the supercooled ionic organic liquids N-propyl-3-methylpyridinium bis(trifluoromethylsulfonyl)imide (PMPIm) and 1-ethyl-3-methylimidazolium tosylate (EMImTOS). The orientational dynamics are complex with relaxation involving several power law decays followed by a final exponential decay. A mode coupling theory (MCT) schematic model, the Sj?gren model, was able to reproduce the PMPIm data very successfully over a wide range of times from 1 ps to hundreds of ns for all temperatures studied. Over the temperature range from room temperature down to the critical temperature Tc of 231 K, the OHD-OKE signal of PMPIm is characterized by the intermediate power law t(-1.00+/-0.04) at short times, a von Schweidler power law t(-0.51+/-0.03) at intermediate times, and a highly temperature-dependent exponential (alpha relaxation) at long times. This form of the decay is identical to the form observed previously for a large number of organic van der Waals liquids. MCT analysis indicates that the theory can explain the experimental data very well for a range of temperatures above Tc, but as might be expected, there are some deviations from the theoretical modeling at temperatures close to Tc. For EMImTOS, the orientational dynamics were studied on the ps time scale in the deeply supercooled region near its glass transition temperature. The orientational relaxation of EMImTOS clearly displays the feature associated with the boson peak at approximately 2 ps, which is the first time domain evidence of the boson peak in ionic organic liquids. Overall, all the dynamical features observed earlier for organic van der Waals liquids using the same experimental technique are also observed for organic ionic liquids.     

Specific ion-dependent attraction and phase behavior of polymer-coated colloids

This paper presents results demonstrating the role of temperature and specific ions in mediating attraction between polymer-coated colloids and determining their equilibrium phase behavior. In particular, theoretical predictions of continuum van der Waals attraction between poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide) (PEO-PPO-PEO)-coated polystyrene colloids are used to explain measured temperature and specific ion-dependent fluid-gel transitions in dispersions of these particles. Building on previous studies of PEO-PPO-PEO-coated polystyrene colloids dispersed in aqueous NaCl media, this work reports rheologically measured fluid-gel transitions as a function of temperature and NaCl/MgSO4 composition. Adhesive-sphere predictions of percolation thresholds are fit to measured fluid-gel data by allowing the adsorbed copolymer layer thickness as a single adjustable parameter. This allows the attraction between the PEO-PPO-PEO layers to be interpreted as a function of temperature and NaCl/MgSO4 composition. Quantitative predictions of a polymeric van der Waals attraction associated with the layer collapse in diminishing solvent conditions provides a simple mechanism for explaining the measured fluid-gel data as a dynamic percolation transition. Ultimately, this work identifies the importance of continuum polymeric van der Waals attraction for explaining specific ion-dependent phenomena.     

Potential-energy surface, van der Waals energy spectrum, and vibronic transitions in s-tetrazine-argon complex

The van der Waals vibrational states and the structure of the vibronic spectrum of s-tetrazine-argon complex have been studied by the ab initio methods. The potential-energy surface of the ground S(0) electronic state of the complex has been constructed by fitting the analytical many-body expansion to a large set of the interaction energy values computed using the second-order M?ller-Plesset perturbation theory combined with the standard aug-cc-pVDZ basis set. The equilibrium structure of the complex found is that with argon located above the tetrazine ring at a distance of 3.394 A. The calculated dissociation energy of 354 cm(-1) is compatible with the experiment. The van der Waals energy spectrum calculated from the potential-energy surface is explained analyzing a correlation with a simpler energy spectrum of benzene-argon. A new assignment of the S(0)-S(1) vibronic spectrum is proposed on the basis of the rigorous selection rules, vibrational energy levels in S(0) and S(1) states and vibronic transition intensities calculated from the electronic transition dipole moment surfaces.     

聚合物流体的范德华凝聚行为

研究了由聚合物的范德华作用导致的凝聚行为. 研究发现, 尽管聚合物同小分子的相行为的形成原因不同(聚合物体系的相行为是由动能、构象熵项和范德华作用能三项相互竞争的结果, 而小分子的相行为是由动能和范德华作用能相互竞争的结果), 但是它们表现出了极为相似的相行为.     

Communication: Identical temperature dependence of the time scales of several linear-response functions of two glass-forming liquids

The frequency-dependent dielectric constant, shear and adiabatic bulk moduli, longitudinal thermal expansion coefficient, and longitudinal specific heat have been measured for two van der Waals glass-forming liquids, tetramethyl-tetraphenyl-trisiloxane (DC704) and 5-polyphenyl-4-ether. Within the experimental uncertainties the loss-peak frequencies of the measured response functions have identical temperature dependence over a range of temperatures, for which the Maxwell relaxation time varies more than nine orders of magnitude. The time scales are ordered from fastest to slowest as follows: Shear modulus, adiabatic bulk modulus, dielectric constant, longitudinal thermal expansion coefficient, and longitudinal specific heat. The ordering is discussed in light of the recent conjecture that van der Waals liquids are strongly correlating, i.e., approximate single-parameter liquids.     

Van der Waals radii of metals from spectroscopic data

The lack of information about the van der Waals radii of metals can be compensated for by using the results of spectroscopic investigations of van der Waals molecules. It has been shown that the interatomic distances in these molecules obey an additive scheme if one allows for the polarization effects. The van der Waals radii of the alkali metals, Ag, Mg, Zn, Cd, Hg, B, Al, In, and Si, have been determined from the interatomic distances in their heteroatomic molecules with atoms of noble gases. Use of the obtained radii for crystal chemistry is discussed.Translated fromIzyestiya Akademil Nauk. Seriya Khimicheskaya, No. 8, pp. 1374–1378, August, 1994.     

Isochronal temperature–pressure superpositioning of the α-relaxation in type-A glass formers

Dielectric spectra were obtained at ambient and elevated pressures for three ‘type-A’ glass formers, which exhibit excess intensity on the high frequency side of the structural relaxation peak. The response to pressure of the peak maximum and the excess wing suggests categorization of such glass formers into two groups: associated liquids, in which the α-relaxation and the excess wing have a different pressure dependence, and van der Waals liquids, which at fixed value of the α-relaxation time, conform to temperature–pressure superpositioning. This distinction is believed to arise from the change in the number of intermolecular bonds (non-dispersive interactions) with volume.     

Statistical fragmentation of hot atomic metal clusters

Fragmentation processes of highly excited neutral and charged atomic metal clusters are studied in the framework of an equilibrium statistical model. In the particular case of hot (near and above melting) neutral and charged sodium clusters of 100 and 200 atoms, a microcanonical Metropolis sampling is used to compute mass (or charge) correlation functions as a function of the excitation energy. This method allows to take the strong anharmonicities in the internal phonon spectrum realistically into account which are linked to the internal structural changes like melting. It is found that, at high enough excitation energy, the system exhibits a phase transition. This phase transition is specific for fragmenting finite systems. From the shape of the caloric curve one sees that the two phases involved are connected by a van der Waals loop characterizing a first order phase transition. Here we observe an enhanced fission and multifragmentation into two or more charged clusters with more than 10 atoms each. Various fragment correlations are studied.     

Interpretation of surface-tension isotherms of n-alkanoic (fatty) acids by means of the van der Waals model

Here we apply the two-dimensional van der Waals model to interpret surface-tension isotherms of aqueous solutions of n-alkanoic (fatty) acids. We processed available experimental data for a homologous series of eight acids, from pentanoic to dodecanoic (lauric). Only three adjustable parameters have been varied to fit simultaneously all experimental curves. Excellent agreement between the theoretical model and the experiment has been obtained. The determined parameter values comply well with the molecular properties and allow one to calculate the surfactant adsorption, surface elasticity, and the surface pressure vs area isotherms. For the dodecanoic acid, the van der Waals model indicates the existence of a surface phase transition.     

A New Modified van Laar Model for Associating Mixtures

In this study, a modification is presented for van Laar model (van der Waals mixture theory) for association mixtures. The molecular association effects are considered in van der Waals mixture theory by adding two new steps to van Laar cycle. The excess Gibbs free energy function and corresponding activity coefficient equations are derived for presented model. In addition to general case when both components are associating fluids, model simplified for two interesting cases: (i) only one fluid is associating, (ii) two fluids are associating but only self-associated species exist in the mixture. This model also is used for VLE calculations for 16 different binary mixtures in which one or both components are associating fluids. Results of the presented model show satisfactory improvement over the nonassociating case for vapor liquid equilibrium (VLE) prediction.     

A van der Waals density functional study of ice Ih

Density functional theory with the van der Waals density functional (vdW-DF) is used to calculate equilibrium crystal structure, binding energy, and bulk modulus of ice Ih. It is found that although it overestimates the equilibrium volume, vdW-DF predicts accurate binding energy of ice Ih, as compared with high level quantum chemistry calculations and experiment. Inclusion of the nonlocal correlation, i.e., van der Waals interaction, leads to an overall improvement over the standard generalized gradient approximation in describing water ice.     

Imidazolium 2‐Substituted 4,5‐Dicyanoimidazolate Ionic Liquids: Synthesis,Crystal Structures and Structure–Thermal Property Relationships

Thirty six novel ionic liquids (ILs) with 1‐butyl‐3‐methylimidazolium and 3‐methyl‐1‐octylimidazolium cations paired with 2‐substitited 4,5‐dicyanoimidazolate anions (substituent at C2=chloro, bromo, methoxy, vinyl, amino, methyl, ethyl, propyl, isopropyl, butyl, pentyl, hexyl, heptyl, octyl, nonyl, decyl, undecyl and phenyl) have been synthesized and characterized by using differential scanning calorimetry (DSC), thermogravimetric analysis (TGA) and single‐crystal X‐ray crystallography. The effects of cation and anion type and structure on the thermal properties of the resulting ionic liquids, including several room temperature ionic liquids (RTILs) are examined and discussed. ILs exhibited large liquid and crystallization ranges and formed glasses on cooling with glass transition temperatures in the range of ?22 to ?68 °C. The effects of alkyl substituents of the imidazolate anion reflected the crystallization, melting points and thermal decomposition of the ILs. The Coulombic packing force, van der Waals forces and size of the anions can be considered for altering the thermal transitions. Three crystal structures of the ILs were determined and the effects of changes to the cations and anions on the packing of the structure were investigated.     

TheT g displacement measurements: A way to foresee the physical behaviour and the use of glassy polymers

The effect of ageing temperature (belowT _g) on physical ageing of glassy PET has been investigated by differential scanning calorimetry. The position of the glass transition endotherm was found to be strongly dependent on the annealing conditions (time, annealing temperature). A single relaxation time model is proposed for the analysis of physical ageing.The variations of the equilibrium relaxation time _iso with annealing temperature allow the determination of the parameters of the model. Finally, using these constants, one can determine the thermal past and foresee the thermal future of unknown samples which are of prime importance in processes using temperatures around the glass transition temperature.

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Zusammenfassung Mittels DSC wurde der Einfluß der Alterungstemperatur (unterhalbT _g) auf das physikalische Altern von glasartigen PET untersucht. Die Lage der Glasumwandlungsendothermen hängt stark von den Temperungsbedingungen (Dauer, Temperungstemperatur) ab. Es wird ein Relaxationszeitmodell für die Analyse physikalischen Alterns vorgeschlagen.Die Parameter dieses Modelles knnen aus der Änderung der Gleichgewichtsrelaxationszeit _iso mit der Temperungstemperatur ermittelt werden. Unter Benutzung dieser Konstanten kann die thermische Vergangenheit unbekannter Proben bestimmt und die thermische Zukunft derselben vorhergesagt werden, was für Vorgänge bei Temperaturen um den Glasumwandlungspunkt von primärer Wichtigkeit ist.

     

A modeling approach to describe the adhesion of rough, asymmetric particles to surfaces

A combined theoretical and experimental study of the adhesion of alumina particles and polystyrene latex spheres to silicon dioxide surfaces was performed. A boundary element technique was used to model electrostatic interactions between micron-scale particles and planar surfaces when the particles and surfaces were in contact. This method allows quantitative evaluation of the effects of particle geometry and surface roughness on the electrostatic interaction. The electrostatic interactions are combined with a previously developed model for van der Waals forces in particle adhesion. The combined model accounts for the effects of particle and substrate geometry, surface roughness and asperity deformation on the adhesion force. Predictions from the combined model are compared with experimental measurements made with an atomic force microscope. Measurements are made in aqueous solutions of varying ionic strength and solution pH. While van der Waals forces are generally dominant when particles are in contact with surfaces, results obtained here indicate that electrostatic interactions contribute to the overall adhesion force in certain cases. Specifically, alumina particles with complex geometries were found to adhere to surfaces due to both electrostatic and van der Waals interactions, while polystyrene latex spheres were not affected by electrostatic forces when in contact with various surfaces.