Tris(2,2′‐bipyridine)iron(II) bis(1,1,3,3‐tetracyano‐2‐ethoxypropenide) dihydrate: chiral hydrogen‐bonded frameworks interpenetrate in three dimensions

In the title compound, [Fe(C₁₀H₈N₂)₃](C₉H₅N₄O)₂·2H₂O, the chiral cations lie across twofold rotation axes in the space group C2/c. The anions and the water molecules are linked by two independent O—H...N hydrogen bonds to form C₂²(8) chains, and these chains are linked by the cations via C—H...N and C—H...O hydrogen bonds to form two interpenetrating three‐dimensional frameworks, each of which contains only one enantiomeric form of the chiral cation.     

Hydrogen‐bonded networks in 5‐chloropyridin‐2‐amine–fumaric acid (2/1) and 2‐aminopyridinium dl‐malate

Crystals of 5‐chloropyridin‐2‐amine–(2E)‐but‐2‐enedioate (2/1), 2C₅H₅ClN₂·C₄H₄O₄, (I), and 2‐aminopyridinium dl ‐3‐carboxy‐2‐hydroxypropanoate, C₅H₇N₂⁺·C₄H₅O₅⁻, (II), are built from the neutral 5‐chloropyridin‐2‐amine molecule and fumaric acid in the case of (I) and from ring‐N‐protonated 2‐aminopyridinium cations and malate anions in (II). The fumaric acid molecule lies on an inversion centre. In (I), the neutral 5‐chloropyridin‐2‐amine and fumaric acid molecules interact via hydrogen bonds, forming two‐dimensional layers parallel to the (100) plane, whereas in (II), oppositely charged units interact via ionic and hydrogen bonds, forming a three‐dimensional network.     

Three‐dimensional hydrogen‐bonded framework in bis(melamin‐1‐ium) naphthalene‐1,5‐disulfonate melamine pentahydrate

Crystals of the title compound, 2C₃H₇N₆⁺·C₁₀H₆O₆S₂²⁻·C₃H₆N₆·5H₂O, are built up of neutral 2,4,6‐triamino‐1,3,5‐triazine (melamine), singly protonated melaminium cations, naphthalene‐1,5‐disulfonate dianions and water molecules. Two independent anions lie across centres of inversion in the space group P. The melamine molecules are connected by N—H...N hydrogen bonds into two different one‐dimensional polymers almost parallel to the (010) plane, forming a stacking structure along the b axis. The centrosymmetric naphthalene‐1,5‐disulfonate anions interact with water molecules via O—H...O hydrogen bonds, forming layers parallel to the (001) plane. The cations and anions are connected by N—H...O and O—H...N hydrogen bonds to form a three‐dimensional supramolecular framework.     

catena‐Poly[[nickel(II)‐μ2‐[1,3‐bis(imidazol‐1‐ylmethyl)benzene‐κ2N3:N3′]‐μ2‐(5‐carboxybenzene‐1,3‐dicarboxylato‐κ4O1,O1′:O3,O3′)] 0.41‐hydrate]

The title compound, {[Ni(C₉H₄O₆)(C₁₄H₁₄N₄)]·0.41H₂O}_n, exhibits a three‐dimensional hydrogen‐bonded supramolecular framework. The Ni^II cation is six‐coordinated in a distorted triangular prism defined by two N atoms from two 1,3‐bis(imidazol‐l‐ylmethyl)benzene (bix) ligands and four O atoms from two 5‐carboxybenzene‐1,3‐dicarboxylate (HBTC) dianions. The bix molecules and HBTC dianions both act as bidentate ligands, linking the Ni^II cations to form a one‐dimensional coordination polymer. A two‐dimensional wave‐like net is constructed by O—H...O hydrogen bonds linking adjacent chains. Partially occupied solvent water molecules fill the cavities and link these layers to form a three‐dimensional supramolecular structure via O—H...O hydrogen bonds. The title compound was also characterized by powder X‐ray diffraction and thermogravimetric analysis.     

(S)‐5‐Benzylimidazolidine‐2,4‐dione monohydrate

The crystal structure of the title compound, C₁₀H₁₀N₂O₂·H₂O, also known as l ‐5‐benzylhydantoin monohydrate, is described in terms of two‐dimensional supramolecular arrays built up from infinite chains assembled via N—H...O and O—H...O hydrogen bonds among the organic molecules and solvent water molecules, with graph‐set R³₃(10)C(5)C²₂(6). The hydrogen‐bond network is reinforced by stacking of the layers through C—H...π interactions.     

Supramolecular architectures in cytosinium 6‐chloronicotinate monohydrate and 5‐bromo‐6‐methylisocytosinium hydrogen sulfate

Aminopyrimidine derivatives are biologically important as they are components of nucleic acids and drugs. The crystals of two new salts, namely cytosinium 6‐chloronicotinate monohydrate, C₄H₆N₃O⁺·C₆H₃ClNO₂⁻·H₂O, ( I ), and 5‐bromo‐6‐methylisocytosinium hydrogen sulfate (or 2‐amino‐5‐bromo‐4‐oxo‐6‐methylpyrimidinium hydrogen sulfate), C₅H₇BrN₃O⁺·HSO₄⁻, ( II ), have been prepared and characterized by single‐crystal X‐ray diffraction. The pyrimidine ring of both compounds is protonated at the imine N atom. In hydrated salt ( I ), the primary R₂²(8) ring motif (supramolecular heterosynthon) is formed via a pair of N—H…O(carboxylate) hydrogen bonds. The cations, anions and water molecule are hydrogen bonded through N—H…O, N—H…N, O—H…O and C—H…O hydrogen bonds, forming R₂²(8), R₃²(7) and R₅⁵(21) motifs, leading to a hydrogen‐bonded supramolecular sheet structure. The supramolecular double sheet structure is formed via water–carboxylate O—H…O hydrogen bonds and π–π interactions between the anions and the cations. In salt ( II ), the hydrogen sulfate ions are linked via O—H…O hydrogen bonds to generate zigzag chains. The aminopyrimidinium cations are embedded between these zigzag chains. Each hydrogen sulfate ion bridges two cations via pairs of N—H…O hydrogen bonds and vice versa, generating two R₂²(8) ring motifs (supramolecular heterosynthon). The cations also interact with one another via halogen–halogen (Br…Br) and halogen–oxygen (Br…O) interactions.     

Supra­molecular hydrogen‐bonding networks in bis­(adeninium) phthalate phthalic acid 1.45‐hydrate

In the title compound, 2C₅H₆N₅⁺·C₈H₄O₄²⁻·C₈H₆O₄·1.45H₂O, the asymmetric unit comprises two adeninium cations, two half phthalate anions with crystallographic C₂ symmetry, one neutral phthalic acid mol­ecule, and one fully occupied and one partially occupied site (0.45) for water mol­ecules. The adeninium cations form N—H⋯O hydrogen bonds with the phthalate anions. The cations also form infinite one‐dimensional polymeric ribbons via N—H⋯N inter­actions. In the crystal packing, hydrogen‐bonded columns of cations, anions and phthalate anions extend parallel to the c axis. The water mol­ecules crosslink adjacent columns into hydrogen‐bonded layers.     

1:1 Adducts of 2,2′‐[isopropylidenebis(p‐phenyleneoxy)]diacetic acid with dimethylammonium and 4,4′‐bipyridine

The title compounds, dimethylammonium 2‐{4‐[1‐(4‐carboxymethoxyphenyl)‐1‐methylethyl]phenoxy}acetate, C₂H₈N⁺·C₁₉H₁₉O₆⁻, (I), and 2,2′‐[isopropylidenebis(p‐phenyleneoxy)]diacetic acid–4,4′‐bipyridine (1/1), C₁₉H₂₀O₆·C₁₀H₈N₂, (II), are 1:1 adducts of 2,2′‐[isopropylidenebis(p‐phenyleneoxy)]diacetic acid (H₂L) with dimethylammonium or 4,4′‐bipyridine. The component ions in (I) are linked by N—H...O, O—H...O and C—H...O hydrogen bonds into continuous two‐dimensional layers parallel to the (001) plane. Adjacent layers are stacked via C—H...O hydrogen bonds into a three‐dimensional network with an –ABAB– alternation of the two‐dimensional layers. In (II), two H₂L molecules, one bipy molecule and two half bipy molecules are linked by O—H...N hydrogen bonds into one‐dimensional chains and rectanglar‐shaped rings. They are assembled viaπ–π stacking interactions and C—H...O hydrogen bonds into an intriguing zero‐dimensional plus one‐dimensional poly(pseudo)rotaxane motif.     

Conformational isomers of the [(5‐methyl‐2‐pyridinio)aminomethylene]diphosphonate dianion and [(5‐methyl‐2‐pyridyl)aminomethylene]diphosphonate trianion in salts with 4‐aminopyridine and ammonia

The crystal structures of two salts, products of the reactions between [(5‐methyl‐2‐pyridyl)aminomethylene]bis(phosphonic acid) and 4‐aminopyridine or ammonia, namely bis(4‐aminopyridinium) hydrogen [(5‐methyl‐2‐pyridinio)aminomethylene]diphosphonate 2.4‐hydrate, 2C₅H₇N₂⁺·C₇H₁₀N₂O₆P₂²⁻·2.4H₂O, (I), and triammonium hydrogen [(5‐methyl‐2‐pyridyl)aminomethylene]diphosphonate monohydrate, 3NH₄⁺·C₇H₉N₂O₆P₂³⁻·H₂O, (II), have been determined. In (I), the Z configuration of the ring N—C and amino N—H bonds of the bisphosphonate dianion with respect to the C_ring—N_amino bond is consistent with that of the parent zwitterion. Removing the H atom from the pyridyl N atom results in the opposite E configuration of the bisphosphonate trianion in (II). Compound (I) exhibits a three‐dimensional hydrogen‐bonded network, in which 4‐aminopyridinium cations and water molecules are joined to ribbons composed of anionic dimers linked by O—H...O and N—H...O hydrogen bonds. The supramolecular motif resulting from a combination of these three interactions is a common phenomenon in crystals of all of the Z‐isomeric zwitterions of 4‐ and 5‐substituted (2‐pyridylaminomethylene)bis(phosphonic acid)s studied to date. In (II), ammonium cations and water molecules are linked to chains of trianions, resulting in the formation of double layers.     

The supramolecular architecture in 4,4′‐bipyridinium bis(hydrogen oxalate)

The asymmetric unit of the title compound, C₁₀H₁₀N₂²⁺·2C₂HO₄⁻, consists of one half of a 4,4′‐bipyridinium cation, which has inversion symmetry, and a hydrogen oxalate anion, in which an intramolecular hydrogen bond exists. The cations and anions are connected by O—H...O, N—H...O and C—H...O hydrogen bonds, forming a two‐dimensional network, whereas π–π stacking interactions involving the 4,4′‐bipyridinium cations lead to the formation of a three‐dimensional supramolecular structure. An unusual deca‐atomic ring is formed between two hydrogen oxalate anions, which are linked side‐to‐side via O—H...O hydrogen‐bonding interactions.     

catena‐Poly[[[(di‐2‐pyridylamine‐κ2N2,N2′)copper(II)]‐μ‐benzene‐1,3‐dicarboxylato‐κ3O1,O1′:O3] monohydrate], a zigzag coordination polymer with strong π–π interactions

The novel title coordination polymer, {[Cu(C₈H₄O₄)(C₁₀H₉N₃)]·H₂O}_n, synthesized by the slow‐diffusion method, takes the form of one‐dimensional zigzag chains built up of Cu^II cations linked by benzene‐1,3‐dicarboxylate (ipht) anions. An exceptional characteristic of this structure is that it belongs to a small group of metal–organic polymers where ipht is coordinated as a bridging tridentate ligand with monodentate and chelate coordination of individual carboxylate groups. The Cu^II cation has a highly distorted square‐pyramidal geometry formed by three O atoms from two ipht anions and two N atoms from a di‐2‐pyridylamine (dipya) ligand. The zigzag chains, which run along the b axis, further construct a three‐dimensional metal–organic framework via strong face‐to‐face π–π interactions and hydrogen bonds. A solvent water molecule is linked to the different carboxylate groups via hydrogen bonds. Thermogravimetric and differential scanning calorimetric analyses confirm the strong hydrogen bonding.     

2,6‐Diamino‐9H‐purine monohydrate and bis(2,6‐diamino‐9H‐purin‐1‐ium) 2‐(2‐carboxylatophenyl)acetate heptahydrate: two simple structures with very complex hydrogen‐bonding schemes

Two structures presenting an uncomplexed 2,6‐diaminopurine (dap) group are reported, namely 2,6‐diamino‐9H‐purine monohydrate, C₅H₆N₆·H₂O, (I), and bis(2,6‐diamino‐9H‐purin‐1‐ium) 2‐(2‐carboxylatophenyl)acetate heptahydrate, 2C₅H₇N₆⁺·C₉H₆O₄²⁻·7H₂O, (II). Both structures are rather featureless from a molecular point of view, but present instead an outstanding hydrogen‐bonding scheme. In compound (I), this is achieved through a rather simple independent unit content (one neutral dap and one water molecule) and takes the form of two‐dimensional layers tightly connected by strong hydrogen bonds, and interlinked by much weaker hydrogen bonds and π–π interactions. In compound (II), the fundamental building blocks are more complex, consisting of two independent 2,6‐diamino‐9H‐purin‐1‐ium (Hdap⁺) cations, one homophthalate [2‐(2‐carboxylatophenyl)acetate] dianion and seven solvent water molecules. The large number of hydrogen‐bond donors and acceptors produces 26 independent interactions, leading to an extended and complicated network of hydrogen bonds in a packing organization characterized by the stacking of interleaved anionic and cationic planar arrays. These structural characteristics are compared with those of similar compounds in the literature.     

Hydrogen‐bond‐directed supramolecular arrays in 4,4′‐bipyridinium tetrachloroterephthalate dihydrate and bis(1,10‐phenanthrolinium) tetrachloroterephthalate tetrachloroterephthalic acid trihydrate

The title compounds, C₁₀H₁₀N₂²⁺·C₈Cl₄O₄²⁻·2H₂O, (I), and 2C₁₂H₉N₂⁺·C₈Cl₄O₄²⁻·C₈H₂Cl₄O₄·3H₂O, (II), both crystallize as charge‐transfer organic salts with the dianionic or neutral acid components lying on inversion centres. The acid and base subunits in (I) arrange alternately to generate a linear tape motif via N—H...O hydrogen bonds; these tapes are further combined into a three‐dimensional architecture through multiple O—H...O and C—H...O interactions involving solvent water molecules. In contrast, the neutral and anionic acid components in (II) are linked to form a zigzag chain by means of O—H...O hydrogen bonds between acid groups, with dangling 1,10‐phenanthrolinium units connected to these chains by carboxylate–pyridinium interactions with R₂²(7) hydrogen‐bond notation. Adjacent chains are further extended to result in a two‐dimensional corrugated layer network viaπ–π interactions. Inter‐ion Cl...O interactions are also found in both (I) and (II).     

Hydrogen‐bonded networks in trans‐3‐(3‐pyridyl)acrylic acid and rctt‐3,3′‐(3,4‐dicarboxycyclobutane‐1,2‐diyl)dipyridinium dichloride

The structure of trans‐3‐(3‐pyridyl)acrylic acid, C₈H₇NO₂, (I), possesses a two‐dimensional hydrogen‐bonded array of supramolecular ribbons assembled via heterodimeric synthons between the pyridine and carboxyl groups. This compound is photoreactive in the solid state as a result of close contacts between the double bonds of neighbouring molecules [3.821 (1) Å] along the a axis. The crystal structure of the photoproduct, rctt‐3,3′‐(3,4‐dicarboxycyclobutane‐1,2‐diyl)dipyridinium dichloride, C₁₆H₁₆N₂O₄²⁺·2Cl⁻, (II), consists of a three‐dimensional hydrogen‐bonded network built from crosslinking of helical chains integrated by self‐assembly of dipyridinium cations and Cl⁻ anions via different O—H...Cl, C—H...Cl and N⁺—H...Cl hydrogen‐bond interactions.     

catena‐Poly[4,4′‐bipyridinium [[cis‐di­chloro­manganese(II)]‐di‐μ‐chloro]], a novel manganese(II) coordination polymer with 4,4′‐bipyridinium

The title novel manganese(II) coordination polymer, {(C₁₀H₁₀N₂)[MnCl₄]}_n, consists of a one‐dimensional infinite zigzag chain composed of polymeric [MnCl₄]²⁻ units in which each Mn²⁺ ion is located on a twofold rotation axis and is coordinated to two terminal Cl atoms and four bridging chloro ligands. Adjacent Mn²⁺ ions are linked by double Cl bridges arranged about a centre of inversion, thus forming anionic chains of distorted edge‐sharing octa­hedra. Rows of approximately parallel 4,4′‐bipyridinium cations run side‐by‐side with the MnCl₄ chains. A two‐dimensional layer structure is constructed via hydrogen bonds and by additional π–π stacking inter­actions.     

N—H...S and C—H...S hydrogen bonds in two tetraalkylammonium dithiobiurea(1–) inclusion compounds

Two inclusion compounds of dithiobiurea and tetrapropylammonium and tetrabutylammonium are characterized and reported, namely tetrapropylammonium carbamothioyl(carbamothioylamino)azanide, C₁₂H₂₈N⁺·C₂H₅N₄S₂⁻, (1), and tetrabutylammonium carbamothioyl(carbamothioylamino)azanide, C₁₆H₃₆N⁺·C₂H₅N₄S₂⁻, (2). The results show that in (1), the dithiobiurea anion forms a dimer via N—H...N hydrogen bonds and the dimers are connected into wide hydrogen‐bonded ribbons. The guest tetrapropylammonium cation changes its character to become the host molecule, generating pseudo‐channels containing the aforementioned ribbons by C—H...S contacts, yielding the three‐dimensional network structure. In comparison, in (2), the dithiobiurea anions are linked via N—H...S interactions, producing one‐dimensional chains which pack to generate two‐dimensional hydrogen‐bonded layers. These layers accommodate the guest tetrabutylammonium cations, resulting in a sandwich‐like layer structure with host–guest C—H...S contacts.     

catena‐Poly[1,4‐dihydroxy‐1,4‐diazoniabicyclo[2.2.2]octane [aquatri‐μ‐chlorido‐trichloridodicuprate(II)]]

The title compound, {(C₆H₁₄N₂O₂)[Cu₂Cl₆(H₂O)]}_n, consists of 1,4‐dihydroxy‐1,4‐diazoniabicyclo[2.2.2]octane dications and one‐dimensional inorganic anionic {[Cu₂Cl₆(H₂O)]²⁻}_n chains in which both five‐coordinate [CuCl₃(H₂O)]⁻ and five‐coordinate [CuCl₃]⁻ units exist. These two distinct type of unit are linked together by one chloride ion and are bridged across centres of inversion to further units of their own type through two chloride ions, giving rise to novel polymeric zigzag chains parallel to the c axis. The chains are connected by O—H...Cl hydrogen bonds to produce R₂⁴(16) ring motifs, resulting in two‐dimensional layers parallel to the ac plane. These layers are linked into a three‐dimensional framework with the organic cations via O—H...Cl hydrogen bonds. Hydrogen bonding between the chains, and between the chains and the organic cations, provides stability to the crystal structure.     

catena‐Poly[[silver(I)‐μ‐1,3‐bis(4‐pyridyl)propane] hemi(naphthalene‐1,5‐disulfonate) dihydrate]: a three‐dimensional metallo‐supramolecular sandwich lamellar network

The title compound, {[Ag(C₁₃H₁₄N₂)](C₁₀H₆O₆S₂)_0.5·2H₂O}_n, (I), features a three‐dimensional supramolecular sandwich architecture that consists of two‐dimensional cationic layers composed of polymeric chains of silver(I) ions and 1,3‐bis(4‐pyridyl)propane (bpp) ligands, linked by Ag...Ag and π–π interactions, alternating with anionic layers in which uncoordinated naphthalene‐1,5‐disulfonate (nds²⁻) anions and solvent water molecules form a hydrogen‐bonded network. The asymmetric unit consists of one Ag^I cation linearly coordinated by N atoms from two bpp ligands, one bpp ligand, one half of an nds²⁻ anion lying on a centre of inversion and two solvent water molecules. The two‐dimensional {[Ag(bpp)]⁺}_n cationic and {[(nds)·2H₂O]²⁻}_n anionic layers are assembled into a three‐dimensional supramolecular framework through long secondary coordination Ag...O interactions between the sulfonate O atoms and Ag^I centres and through nonclassical C—H...O hydrogen bonds.     

A one‐dimensional coordination polymer of 5‐[(imidazol‐1‐yl)methyl]benzene‐1,3‐dicarboxylic acid with CuII cations

5‐[(Imidazol‐1‐yl)methyl]benzene‐1,3‐dicarboxylic acid (H₂L) was synthesized and the dimethylformamide‐ and dimethylacetamide‐solvated structures of its adducts with Cu^II, namely catena‐poly[[copper(II)‐bis[μ‐3‐carboxy‐5‐[(imidazol‐1‐yl)methyl]benzoato]] dimethylformamide disolvate], {[Cu(C₁₂H₉N₂O₄)₂]·2C₃H₇NO}_n, (I), and catena‐poly[[copper(II)‐bis[μ‐3‐carboxy‐5‐[(imidazol‐1‐yl)methyl]benzoato]] dimethylacetamide disolvate], {[Cu(C₁₂H₉N₂O₄)₂]·2C₄H₉NO}_n, (II), the formation of which are associated with mono‐deprotonation of H₂L. The two structures are isomorphous and isometric. They consist of one‐dimensional coordination polymers of the organic ligand with Cu^II in a 2:1 ratio, [Cu(μ‐HL)₂]_n, crystallizing as the dimethylformamide (DMF) or dimethylacetamide (DMA) disolvates. The Cu^II cations are characterized by a coordination number of six, being located on centres of crystallographic inversion. In the polymeric chains, each Cu^II cation is linked to four neighbouring HL⁻ ligands, and the organic ligand is coordinated via Cu—O and Cu—N bonds to two Cu^II cations. In the corresponding crystal structures of (I) and (II), the coordination chains, aligned parallel to the c axis, are further interlinked by strong hydrogen bonds between the noncoordinated carboxy groups in one array and the coordinated carboxylate groups of neighbouring chains. Molecules of DMF and DMA (disordered) are accommodated at the interface between adjacent polymeric assemblies. This report provides the first structural evidence for the formation of coordination polymers with H₂Lvia multiple metal–ligand bonds through both carboxylate and imidazole groups.     

A tetrazol‐5‐yl analogue of glycine, 5‐ammoniomethyl‐1H‐tetrazolide,and its copper(II) complex

A nonclassical tetrazole isostere of glycine, viz. zwitterionic 5‐ammoniomethyl‐1H‐tetrazolide, C₂H₅N₅, (I), crystallizes in the chiral P3₁ space group, similar to γ‐glycine. The crystal packing of (I) is determined by a set of classical hydrogen bonds, forming a three‐dimensional network that is practically the same as that in γ‐glycine. The Cu^II complex of (I), poly[[bis(μ₂‐5‐aminomethyl‐1H‐tetrazolido‐κ³N¹,N⁵:N⁴)copper(II)] dihydrate], {[Cu(C₂H₄N₅)₂]·2H₂O}_n, (II), is a layered coordination polymer formed as a result of tetrazole ring bridges. The Cu^II cations lie on inversion centres, are surrounded by four anions and adopt elongated octahedral coordination. Water molecules are located in the interlayer space and connect the layers into a three‐dimensional network via a system of hydrogen bonds.