l‐Isoleucyl‐l‐serine 0.33‐hydrate,l‐phenyl­alanyl‐l‐serine and l‐methionyl‐l‐serine 0.34‐hydrate

The structures of the title dipeptides, C₉H₁₈N₂O₄·0.33H₂O, C₁₂H₁₆N₂O₄ and C₈H₁₆N₂O₄S·0.34H₂O, complete a series of investigations focused on l ‐Xaa‐l ‐serine peptides, where Xaa is a hydro­phobic residue. All three structures are divided into hydro­philic and hydro­phobic layers. The hydro­philic layers are thin for l ‐phenyl­alanyl‐l ‐serine, rendered possible by an unusual peptide conformation, and thick for l ‐isoleucyl‐l ‐serine and l ‐methionyl‐l ‐serine, which include cocrystallized water mol­ecules on the twofold axes.     

l‐Phenyl­alanyl‐l‐alanine dihydrate

A new type of molecular arrangement for dipeptides is observed in the crystal structure of l ‐phenyl­alanyl‐l ‐alanine dihydrate, C₁₂H₁₆N₂O₃·2H₂O. Two l ‐Phe and two l ‐Ala side chains aggregate into large hydro­phobic columns within a three‐dimensional hydrogen‐bond network.     

N‐(l‐2‐Aminobutyryl)‐l‐alanine and 2‐(l‐alanylamino)‐l‐butyric acid 0.33‐hydrate

The crystal structure of N‐(l ‐2‐amino­butyryl)‐l ‐alanine, C₇H₁₄N₂O₃, is closely related to the structure of l ‐alanyl‐l ‐alanine, both being tetragonal, while the retro‐analogue 2‐(l ‐alanyl­amino)‐l ‐butyric acid 0.33‐hydrate, C₇H₁₄N₂O₃·­0.33H₂O, forms a new type of molecular columnar structure with three peptide mol­ecules in the asymmetric unit.     

N‐Acetyl‐l‐tyrosine methyl ester monohydrate at 293 and 123 K

The crystal structure of a protected l ‐tyrosine, namely N‐acetyl‐l ‐tyrosine methyl ester monohydrate, C₁₂H₁₅NO₄·H₂O, was determined at both 293 (2) and 123 (2) K. The structure exhibits a network of O—H...O and N—H...O hydrogen bonds, in which the water molecule plays a crucial role as an acceptor of one and a donor of two hydrogen bonds. Molecules of water and of the protected l ‐tyrosine form hydrogen‐bonded layers perpendicular to [001]. C—H...π interactions are observed in the hydrophobic regions of the structure. The structure is similar to that of N‐acetyl‐l ‐tyrosine ethyl ester monohydrate [Soriano‐García (1993). Acta Cryst. C 49 , 96–97].     

Water polymers in l‐alanyl‐l‐methionine hemihydrate

The side chains of l ‐alanyl‐l ‐me­thionine hemihydrate, C₈H₁₆N₂O₃S·0.5H₂O, form hydro­phobic columns within a three‐dimensional hydrogen‐bond network that includes extended polymers of cocrystallized water mol­ecules and C^α—H⋯S interactions.     

l‐Histidyl‐l‐serine 3.7‐hydrate: water channels in the crystal structure of a polar dipeptide

Dipeptides may form nanotubular structures with pore diameters in the range 3.2–10 Å. These compounds normally contain at least one and usually two hydrophobic residues, but l ‐His‐l ‐Ser hydrate, C₉H₁₄N₄O₄·3.7H₂O, with two hydrophilic residues, forms large polar channels filled with ordered as well as disordered water molecules.     

Two modifications of l‐alanyl‐l‐tyrosyl‐l‐alanine with different solvent mol­ecules in the crystal lattice

The low‐temperature crystal and mol­ecular structure analyses of two modifications of l ‐alanyl‐l ‐tyrosyl‐l ‐alanine with water, C₁₅H₂₁N₃O₅·2.63H₂O [(I), at 9 K], and ethanol, C₁₅H₂₁N₃O₅·C₂H₅O [(II), at 20 K], solvent mol­ecules in the crystal lattice show that the overall conformations of both modifications of the title tripeptide are practically the same. Moreover, despite the presence of different solvent mol­ecules in the crystal lattice, the specific inter­molecular inter­actions characteristic for individual tripeptide mol­ecules of (I) and (II) are conserved. The crystal packing of the two modifications of Ala‐Tyr‐Ala differ from each other only in the solvent region. The tight arrangements of tripeptide mol­ecules seem to be responsible for similar displacement parameters for all non‐H atoms, despite the different distances from the mol­ecular centre of mass. Comparison of the displacement parameters between the room‐ and low‐temperature structures shows that an average U_eq value decrease of about 80% takes place at 9 K [for (I)] and 20 K [for (II)] with respect to room temperature.     

l‐Tryptophan formic acid solvate at 183 K

In the title compound, C₁₁H₁₂N₂O₂·CH₂O₂, at 183 K. l ‐­tryptophan appears in the zwitterionic form, while the formic acid molecule is neutral. The formic acid molecule is the donor in a strong O—H?O hydrogen bond to the carboxyl­ate group of the tryptophan mol­ecule, with a short O?O contact of 2.487 (2) Å.     

Cyclic water pentamers in triclinic crystals of brucinium l‐glycerate

Brucinium l ‐glycerate 4.75‐hydrate, C₂₃H₂₇N₂O₄⁺·C₃H₅O₄⁻·4.75H₂O, was obtained by racemic resolution of dl ‐glyceric acid. This is the first report of triclinic crystals containing brucine. The water and l ‐glycerate anions form tapes built up of pentamers formed by water and carboxy O atoms, and this appears to be the reason for the low symmetry of the crystal.     

l‐Seryl‐l‐phenyl­alanine

The peptide bond in the crystal structure of the title compound, C₈H₁₆N₂O₄, deviates substantially from planarity in the same manner as in other l ‐Ser‐l ‐Xaa dipeptides, where Xaa is a hydro­phobic residue.     

Pseudophomins A and B,a class of cyclic lipodepsipeptides isolated from a Pseudomonas species

The crystal structures of pseudophomins A and B, with primary structures β‐hydroxy­decanoyl–l ‐Leu–d ‐Glu–d ‐allo‐Thr–d ‐Ile–d ‐Leu–d ‐Ser–l ‐Leu–d ‐Ser–l ‐Ile monohydrate, C₅₅H₉₇N₉O₁₆·H₂O, and β‐hydroxy­dodecanoyl–l ‐Leu–d ‐Glu–d ‐allo‐Thr–d ‐Ile–d ‐Leu–d ‐Ser–l ‐Leu–d ‐Ser–l ‐Ile monohydrate, C₅₇H₁₀₁N₉O₁₆·H₂O, new cyclic lipodepsipeptides isolated from Pseudomonas fluorescens strain BRG100, have been solved. The absolute configuration of pseudophomin A has been determined from anomalous dispersion and the stereochemistry of the β‐hydroxy acid group is R.     

Proton‐transfer and non‐transfer in compounds of quinoline and quinaldic acid with l‐tartaric acid

The structures of two compounds of l ‐tartaric acid with quinoline, viz. the proton‐transfer compound quinolinium hydrogen (2R,3R)‐tartrate monohydrate, C₉H₈N⁺·C₄H₅O₆⁻·H₂O, (I), and the anhydrous non‐proton‐transfer adduct with quinaldic acid, bis­(quinolinium‐2‐carboxyl­ate) (2R,3R)‐tar­taric acid, 2C₁₀H₇NO₂·C₄H₆O₆, (II), have been determined at 130 K. Compound (I) has a three‐dimensional honeycomb substructure formed from head‐to‐tail hydrogen‐bonded hydrogen tartrate anions and water mol­ecules. The stacks of π‐bonded quinolinium cations are accommodated within the channels and are hydrogen bonded to it peripherally. Compound (II) has a two‐dimensional network structure based on pseudo‐centrosymmetric head‐to‐tail hydrogen‐bonded cyclic dimers comprising zwitterionic quinaldic acid species which are inter­linked by tartaric acid mol­ecules.     

l‐Prolinium picrate and 2‐methyl­pyridinium picrate

In the structure of l ‐prolinium picrate, C₅H₁₀NO₂⁺·C₆H₂N₃O₇⁻, the C^γ atom of the pyrrolidine ring has conformational disorder. Both the major and minor conformers of the pyrrolidine ring adopt conformations inter­mediate between a half‐chair and an envelope. Both the cation and anion are packed through chelated three‐centred N—H⋯O hydrogen bonds. The prolinium cation connects two different picrate anions, leading to an infinite chain running along the b axis. In 2‐methyl­pyridinium picrate, C₆H₈N⁺·C₆H₂N₃O₇⁻, the cations and anions are packed separately along the a axis and are inter­connected by N—H⋯O hydrogen bonds. Intra­molecular contacts between phenolate O atoms and adjacent nitro groups are identified in both structures. A graph‐set motif of R₁²(6) is observed in both structures.     

Nucleotide–amino acid interactions in the l‐His–IMP·MeOH·H2O complex

In the crystal structure of the methanol‐solvated monohydrated complex of l ‐histidine (His) with inosine 5′‐monophosphate (IMP), namely l ‐histidinium inosine‐5′‐phosphate methanol solvate monohydrate, C₆H₁₀N₃O₂⁺·C₁₀H₁₂N₄O₈P⁻·CH₃OH·H₂O, most of the interactions between IMP anions (anti/C3′‐endo/gauche–gauche conformers) are realized between the riboses and hypoxanthine bases in a trans sugar‐edge/sugar‐edge geometry, and between the phosphate groups. The base Watson–Crick edge is involved in additional methanol‐mediated IMP...MeOH...IMP contacts. Specific and nonspecific nucleotide–amino acid (IMP...His) interactions engage the Hoogsteen edges of the base and phosphate group, respectively. Additional stabilization of His...IMP contacts is provided by π–π stacking between the imidazolium ring of His and the hypoxanthine base of IMP. The results may indicate the possible recognition mechanism between His and IMP.     

Alaninyl­tryptophan hydrate,glycyl­tryptophan dihydrate and tryptophyl­glycine hydrate

The crystal structures of the title tryptophan‐containing dipeptides, C₁₄H₁₇N₃O₃·H₂O, (I), C₁₃H₁₅N₃O₃·2H₂O, (II), and C₁₃H₁₅N₃O₃·H₂O, (III), respectively, contain at least one water mol­ecule of solvation. As a result, the crystal packing of these compounds is composed of regions of water‐mediated hydrogen bonding and tryptophan ring‐to‐ring stacking separated by the length of the mol­ecule. The tryptophan rings stack in a continuous layer that, when viewed edge‐on from the outermost part of the tryptophan ring, exhibits a herring‐bone motif. However, owing to the lack of direct overlap of adjacent rings, no degree of π contact or long‐range delocalization of ring systems is possible here. The overall molecular conformations of (I) and (III) contain a folding of one peptide over the other, such that a minimum in molecular volume occurs without any intramolecular hydrogen bonding. In these two dipeptides, extensive hydrogen bonding is observed to and from the single water mol­ecule of solvation. In the crystal structure of (II), however, an extended mol­ecule conformation complements a more extensive hydrogen‐bonding scheme involving two water mol­ecules of solvation per dipeptide.     

A new ‘hydrogen‐bond rule' applied to the structure of l‐seryl‐l‐alanine and pairs of dipeptide retroanalogues

A new `rule' for the association of hydrogen‐bond donors and acceptors in crystal structures is presented. It implies that ranks are assigned to each donor and each acceptor (1 is best, 2 is next best etc.), and that hydrogen bonds should be formed between donors and acceptors in rank order. l ‐Ser‐l ‐Ala, C₆H₁₂N₂O₄, is used together with its retroanalogue, l ‐Ala‐l ‐Ser, and three other pairs of dipeptide retroanalogues to illustrate this rule and the reasons why it may not always be followed.     

Brucine salts of l‐α‐hydr­oxy acids: brucinium hydrogen (S)‐malate penta­hydrate and anhydrous brucinium hydrogen (2R,3R)‐tartrate at 130 K

The structures of two brucinium (2,3‐dimeth­oxy‐10‐oxostrychnidinium) salts of the α‐hydr­oxy acids l ‐malic acid and l ‐tartaric acid, namely brucinium hydrogen (S)‐malate penta­hydrate, C₂₃H₂₇N₂O₄⁺·C₄H₅O₅⁻·5H₂O, (I), and anhydrous brucinium hydrogen (2R,3R)‐tartrate, C₂₃H₂₇N₂O₄⁺·C₄H₅O₆⁻,(II), have been determined at 130 K. Compound (I) has two brucinium cations, two hydrogen malate anions and ten water mol­ecules of solvation in the asymmetric unit, and forms an extensively hydrogen‐bonded three‐dimensional framework structure. In compound (II), the brucinium cations form the common undulating brucine sheet substructures, which accommodate parallel chains of head‐to‐tail hydrogen‐bonded tartrate anion species in the inter­stitial cavities.     

l‐Phenyl­alanyl‐l‐tryptophan 0.75‐hydrate

The title compound, C₂₀H₂₁N₃O₃·0.75H₂O, crystallizes as exceedingly thin fibers. The crystal packing arrangement is related to those of other hydro­phobic dipeptides with phenyl­alanine residues, but the structure has pseudo‐tetra­gonal symmetry in an ortho­rhom­bic space group with four peptide mol­ecules and three water mol­ecules in the asymmetric unit.     

X‐ray studies of crystalline complexes involving amino acids and peptides. XLIII. Adipic acid complexes of l‐ and dl‐lysine

The asymmetric unit of the dl ‐lysine complex of adipic acid [bis­(dl ‐lysinium) adipate], 2C₆H₁₅N₂O₂⁺·C₆H₈O₄²⁻, contains a zwitterionic singly charged lysinium cation and half a doubly charged adipate anion (the complete anion has inversion symmetry). That of the l ‐lysine complex (lysinium hydrogen adipate), C₆H₁₅N₂O₂⁺·C₆H₉O₄⁻, consists of a lysinium cation and a singly charged hydrogen adipate anion. In both structures, the lysinium cations organize into layers inter­connected by adipate or hydrogen adipate anions. However, the arrangement of the mol­ecular ions in the layer is profoundly different in the dl ‐ and l ‐lysine complexes. The hydrogen adipate anions in the l ‐lysine complex form linear arrays in which adjacent ions are inter­connected by a symmetric O⋯H⋯O hydrogen bond.     

l‐Methionyl‐l‐alanine: a dipeptide with hexagonal symmetry and Z′ = 7

The crystal structure of l ‐methionyl‐l ‐alanine, C₈H₁₆N₂O₃S, is very similar to that of l ‐valyl‐l ‐alanine [Görbitz & Gundersen (1996). Acta Cryst. C 52 , 1764–1767] and other related dipeptides in space group P6₁, but there are seven mol­ecules in the asymmetric unit. The Z value of 42 is the highest ever observed for a chiral mol­ecule.