Different hydrogen-bonding patterns in two [Zn(ENTPP)] complexes with water or methanol as ligands

We have synthesized zinc complexes of H₂ENTPP (5-(8-ethoxycarbonyl-1-naphthyl)-10,15,20-triphenyl porphyrin) as a model to study hydrogen-bonding interactions. When water or methanol is a ligand, crystals of [Zn(ENTPP)(CH₃OH)] or [Zn(ENTPP)(H₂O)]?·?C₆H₅CH₃ were obtained. In both structures, the ligand has hydrogen-bonding interactions, but in different patterns. In [Zn(ENTPP)(CH₃OH)], the methanol oxygen and carboxylate oxygen in the naphthyl group form an intermolecular hydrogen bond. In [Zn(ENTPP)(H₂O)]?·?C₆H₅CH₃, there are two independent molecules A and B. In molecule B, there is an intramolecular hydrogen bond between the water oxygen and the carboxylate oxygen, while in molecule A, besides the intramolecular hydrogen bond, there is an intermolecular hydrogen bond between the water oxygen and the carboxylate oxygen. ¹H NMR spectra suggest the binding of methanol or water to zinc are equilibrium processes in solution. Equilibrium constant has been determined by UV-Vis measurements, and it suggests the binding affinity of zinc to methanol has been moderately increased.     

Two-step surfactant binding of solvated and cross-linked poly(N-isopropylacrylamide-co- (2-acrylamido-2-methyl propane sulfonic acid))

 A solvated and cross-linked copolymer of N-isopropylacrylamide (IPAAm) and 2-(acrylamido)-2-methyl propane sulfonic acid (AMPS) was synthesized and its interaction with cationic surfactant lauryl-pyridinium chloride (C₁₂PyCl) was investigated. The solvated copolymer exhibited a lower critical solution temperature (LCST) in water, which was extensively shifted to a higher temperature due to the increase of hydrophilicity introduced by AMPS. In C₁₂PyCl solution, LCST of the copolymer was dramatically decreased due to the binding of C₁₂PyCl to AMPS unit, forming a stoichiometric complex. However, in the concentrated C₁₂PyCl solution, its LCST increased due to the non-stoichiometric complex formation. This phenomenon was further examined in the cross-linked copolymer, analyzed by binding isotherms. Two-step binding of surfactant was demonstrated followed by gel shrinking and re-swelling. This binding mechanism was further discussed regarding the effect of charge density and the hydro-phobicity of the main-chain backbone in terms of electrostatic and hydrophobic interactions. Received: 13 May 1997 Accepted: 13 August 1997     

Free enthalpies of replacing water molecules in protein binding pockets

Water molecules in the binding pocket of a protein and their role in ligand binding have increasingly raised interest in recent years. Displacement of such water molecules by ligand atoms can be either favourable or unfavourable for ligand binding depending on the change in free enthalpy. In this study, we investigate the displacement of water molecules by an apolar probe in the binding pocket of two proteins, cyclin-dependent kinase 2 and tRNA-guanine transglycosylase, using the method of enveloping distribution sampling (EDS) to obtain free enthalpy differences. In both cases, a ligand core is placed inside the respective pocket and the remaining water molecules are converted to apolar probes, both individually and in pairs. The free enthalpy difference between a water molecule and a CH₃ group at the same location in the pocket in comparison to their presence in bulk solution calculated from EDS molecular dynamics simulations corresponds to the binding free enthalpy of CH₃ at this location. From the free enthalpy difference and the enthalpy difference, the entropic contribution of the displacement can be obtained too. The overlay of the resulting occupancy volumes of the water molecules with crystal structures of analogous ligands shows qualitative correlation between experimentally measured inhibition constants and the calculated free enthalpy differences. Thus, such an EDS analysis of the water molecules in the binding pocket may give valuable insight for potency optimization in drug design.     

Synthesis and characterization of new synthetic oxygen carriers. A kinetic study of the reaction of the binuclear iron(III)–copper(II) complex with H<Subscript>2</Subscript>O<Subscript>2</Subscript>

New oxygen carriers have been synthesized by the interaction of the Cu^II/Ni^II derivative of the bis(5-nitroindazolyl)methane complex with 14-membered 1,8-dihydro-1,3,6,8,10,13-hexaazacyclotetradecane (M-mac), where M=Fe^III, Ni^II, Co^II, to yield binuclear complexes. These complexes have been characterized by physico-chemical methods: elemental analysis, i.r., ¹H-n.m.r., ¹³C-n.m.r., 2D cosy n.m.r., e.p.r., u.v.–vis. spectroscopy and cyclic voltammetry. A representative binuclear Fe^III–Cu^II complex was chosen to interact with H₂O₂ to elucidate the mechanistic pathway of oxygen binding in solution spectrophotometrically, and also by cyclic voltammetry. Hydrogen peroxide exhibits two mechanisms for binding, either (i) homolysis or (ii) heterolytic cleavage. The mode of H₂O₂ binding can be hazardous in (i) due to the threat of oxidative damage to the cellular structure, proteins and metabolites, or eco-friendly as in (ii) which produces innocuous products such as water and dioxygen. This study aims to combat the problems associated with H₂O₂ binding in nature by producing a parallel study on model compounds.     

Isotope effect on the solubility of amino acids in water

The solubilities of glycine, alanine, phenylalanine, and proline in H₂O and D₂O from 283 K to 335 K were determined. It was found that glycine and alanine are less soluble in heavy water than in light water but proline is more soluble in heavy water over the whole temperature range studied. Phenylalanine is more soluble in H₂O than D₂O below 310 K but above that temperature heavy water becomes a better solvent. An influence of H/D isotope substitution on the enthalpies of solution is also observed. In the case of glycine and alanine enthalpies of solution in heavy water increase by a small amount and in the same time the solution enthalpy for phenylalanine in D₂O increases markedly. No change in the solution enthalpy for proline was observed. The isotope effects on solubility and the solution enthalpy are qualitatively discussed.     

Repeated use of a hydrophobic ligand-containing porous membrane for protein recovery

A porous hollow-fiber membrane containing a phenyl group as a hydrophobic ligand was prepared by radiation-induced graft polymerization of glycidyl methacrylate, followed by successive ring-opening reactions with phenol and water. Bovine serum albumin (BSA) was bound to the ligand during permeation of a BSA solution in phosphate buffer containing 2M (NH₄)₂SO₄ through the pores of the hollow fiber. Subsequent elution with an (NH₄)₂SO₄-free buffer exhibited an elution percentage of 82%. Repeated cycles of adsorption and elution caused the accumulation of BSA on the pore surface, resulting in a decrease in the binding capacity of BSA with increasing number of cycles. In contrast, by permeating 1 M NaOH after each elution, the binding capacity of BSA was maintained even after ten cycles. This alkaline regeneration was found to be effective in ensuring repeated use of the phenyl-group-containing porous membrane for recovery of proteins.     

On the dehydration of mixed oxides powders coprecipitated from aqueous solutions

Concerning the generation of manganese ferrite by coprecipitation from MnO₂ and FeSO₄7H₂O aqueous solution, based on TG, DTG and DTA measurements, IR and mass spectra, SEM and X-ray diffraction data, the authors present an investigation on the elimination of water from the non-aged, aged and air-calcined coprecipitates. Some powders microstructure changes generated by water release through aging in solution or heating in air are presented.     

顺铂化合物与鸟嘌呤异构体相互作用的理论研究

The influence of binding of cisplatin adducts on tautomeric equilibrium of guanine was investigated using quantum chemical method. The monoaqua adduct [Pt（NH3）2Cl（H2O）]^＋ and the diaqua adduct [Pt（NHa）2（H2O）2]^2＋ were chosen for coordination to the N（7） site of guanine tautomers. The results demonstrate that the platinum adducts influence moderately on tautomeric equilibrium, but do not change the relative stability of tautomers whether in gas phase or in aqueous solution. The keto form having H atom at N（1） and N（9） was always the predominant structure when cisplatin adducts were bound to guanine. However, other forms could coexist in water. Meanwhile, our calculations suggest that the tautomeric equilibrium should be via the same intermediate.     

Antigen-antibody binding kinetics for biosensor applications

The diffusion-limited binding kinetics of antigen (or antibody) in solution to antibody (or antigen) immobilized on a biosensor surface is analyzed within a fractal framework. The fit obtained by a dual-fractal analysis is compared with that obtained from a single-fractal analysis. In some cases, the dual-fractal analysis provides an improved fit when compared with a single-fractal analysis. This was indicated by the regression analysis provided by Sigmaplot (San Rafael, CA). These examples are presented. It is of interest to note that the state of disorder (or the fractal dimension) and the binding rate coefficient both increase (or decrease, a single example is presented for this case) as the reaction progresses on the biosensor surface. For example, for the binding of monoclonal antibody MAb 49 in solution to surface-immobilized antigen, a 90.4% increase in the fractal dimension (D_f1 toD _f2 ) from 1.327 to 2.527 leads to an increase in the binding rate coefficient (k₁ to k₂) by a factor of 9.4 from 11.74 to 110.3. The different examples analyzed and presented together provide a means by which the antigen-antibody reactions may be better controlled by noting the magnitude of the changes in the fractal dimension and in the binding rate coefficient as the reaction progresses on the biosensor surface.     

A Study of Convective Mass Exchange between Dispersed Flows in a Valve-Pulsatory Apparatus with Permeable Partition

A mathematical model of convective mass exchange between dispersed flows in a valve-pulsatory apparatus with permeable partition for carrying out processes with finely dispersed solid phase is proposed. The mass exchange between flows of aqueous Na₂CO₃ solution and distilled water, or pearlite suspension in water and aqueous solution of NaCl was studied on a pilot apparatus.     

Hydration preferences for Mn4Ca cluster models of photosystem II: location of potential substrate-water binding sites

Density functional theory calculations are reported on a set of three model structures of the Mn₄Ca cluster in the water‐oxidizing complex of Photosystem II (PSII), which share the structural formula [CaMn₄C₉H₁₀N₂O₁₆]^q+ ? (H₂O)_n (q=?1, 0, 1, 2, 3; n=0–7). In these calculations we have explored the preferred hydration sites of the Mn₄Ca cluster across five overall oxidation states (S₀ to S₄) and all feasible magnetic‐coupling arrangements to identify the most likely substrate–water binding sites. We have also explored charge‐compensated structures in which the overall charge on the cluster is maintained at q=0 or +1, which is consistent with the experimental data on sequential proton loss in the real system. The three model structures have skeletal arrangements that are strongly reminiscent, in their relative metal‐atom positions, of the 2.9‐, 3.7‐, and 3.5 Å‐resolution crystal structures, respectively, whereas the charge states encompassed in our study correspond to an assignment of (Mn^III)₃Mn^II for S₀ and up to (Mn^IV)₃Mn^III for S₄. The three models differ principally in terms of the spatial relationship between one Mn (Mn(4)) and a generally robust Mn₃Ca tetrahedron that contains Mn(1), Mn(2), and Mn(3). Oxidation‐state distributions across the four manganese atoms, in most of the explored charge states, are dependent on details of the cluster geometry, on the extent of assumed hydration of the clusters, and in some instances on the imposed magnetic‐coupling between adjacent Mn atoms. The strongest water‐binding sites are generally those on Mn(4) and Ca. However, one structure type displays a high‐affinity binding site between Ca and Mn(3), the S‐state‐dependent binding‐energy pattern of which is most consistent with the substrate water‐exchange kinetics observed in functional PSII. This structure type also permits another water molecule to access the cluster in a manner consistent with the substrate–water interaction with the Mn cluster, seen in electron spin‐echo envelope modulation (ESEEM) studies of the functional enzyme in the S₀ and S₂ states. It also rationalizes the significant differences in hydrogen‐bonding interactions of the substrate water observed in the FTIR measurements of the S₁ and S₂ states. We suggest that these two water‐binding sites, which are molecularly close, model the actual substrate‐binding sites in the enzyme.     

Minute Additions of DMSO Affect Protein Dynamics Measurements by NMR Relaxation Experiments through Significant Changes in Solvent Viscosity

Studies of protein−ligand binding often rely on dissolving the ligand in dimethyl sulfoxide (DMSO) to achieve sufficient solubility, and then titrating the ligand solution into the protein solution. As a result, the final protein−ligand solution contains small amounts of DMSO in the buffer. Here we report how the addition of DMSO impacts studies of protein conformational dynamics. We used ¹⁵N NMR relaxation to compare the rotational diffusion correlation time (τ_C) of proteins in aqueous buffer with and without DMSO. We found that τ_C scales with the viscosity of the water−DMSO mixture, which depends sensitively on the amount of DMSO and varies by a factor of 2 across the relevant concentration range. NMR relaxation studies of side chains dynamics are commonly interpreted using τ_C as a fixed parameter, obtained from backbone ¹⁵N relaxation data acquired on a separate sample. Model-free calculations show that errors in τ_C, arising from mismatched DMSO concentration between samples, lead to significant errors in order parameters. Our results highlight the importance of determining τ_C for each sample or carefully matching the DMSO concentrations between samples.     

The structure of a valinomycin–hexaaquamagnesium trifluoromethanesulfonate compound

Valinomycin is a naturally occurring cyclic dodecadepsipeptide with the formula cyclo‐[d ‐HiVA→l ‐Val →l ‐LA→l ‐Val]₃ (d ‐HiVA is d ‐α‐hydroxyisovaleic acid, Val is valine and LA is lactic acid), which binds a K⁺ ion with high selectively. In the past, several cation‐binding modes have been revealed by X‐ray crystallography. In the K⁺, Rb⁺ and Cs⁺ complexes, the ester O atoms coordinate the cation with a trigonal antiprismatic geometry, while the six amide groups form intramolecular hydrogen bonds and the network that is formed has a bracelet‐like conformation (Type 1 binding). Type 2 binding is seen with the Na⁺ cation, in which the valinomycin molecule retains the bracelet conformation but the cations are coordinated by only three ester carbonyl groups and are not centrally located. In addition, a picrate counter‐ion and a water molecule is found at the center of the valinomycin bracelet. Type 3 binding is observed with divalent Ba²⁺, in which two cations are incorporated, bridged by two anions, and coordinated by amide carbonyl groups, and there are no intramolecular amide hydrogen bonds. In this paper, we present a new Type 4 cation‐binding mode, observed in valinomycin hexaaquamagnesium bis(trifluoromethanesulfonate) trihydrate, C₅₄H₉₀N₆O₁₈·[Mg(H₂O)₆](CF₃SO₃)₂·3H₂O, in which the valinomycin molecule incorporates a whole hexaaquamagnesium ion, [Mg(H₂O)₆]²⁺, via hydrogen bonding between the amide carbonyl groups and the hydrate water H atoms. In this complex, valinomycin retains the threefold symmetry observed in Type 1 binding, but the amide hydrogen‐bond network is lost; the hexaaquamagnesium cation is hydrogen bonded by six amide carbonyl groups. ¹H NMR titration data is consistent with the 1:1 binding stoichiometry in acetonitrile solution. This new cation‐binding mode of binding a whole hexaaquamagnesium ion by a cyclic polypeptide is likely to have important implications for the study of metal binding with biological models under physiological conditions.     

The Challenge of Deciphering Linkage Isomers in Mixtures of Oligomeric Complexes Derived from 9‐Methyladenine and trans‐(NH3)2PtII Units

Metal coordination to N9‐substituted adenines, such as the model nucleobase 9‐methyladenine (9MeA), under neutral or weakly acidic pH conditions in water preferably occurs at N1 and/or N7. This leads, not only to mononuclear linkage isomers with N1 or N7 binding, but also to species that involve both N1 and N7 metal binding in the form of dinuclear or oligomeric species. Application of a trans‐(NH₃)₂Pt^II unit and restriction of metal coordination to the N1 and N7 sites and the size of the oligomer to four metal entities generates over 50 possible isomers, which display different feasible connectivities. Slowly interconverting rotamers are not included in this number. Based on ¹H NMR spectroscopic analysis, a qualitative assessment of the spectroscopic features of N1,N7‐bridged species was attempted. By studying the solution behavior of selected isolated and structurally characterized compounds, such as trans‐[PtCl(9MeA‐N7)(NH₃)₂]ClO₄ ? 2H₂O or trans,trans‐[{PtCl(NH₃)₂}₂(9MeA‐N1,N7)][ClO₄]₂ ? H₂O, and also by application of a 9MeA complex with an (NH₃)₃Pt^II entity at N7, [Pt(9MeA‐N7)(NH₃)₃][NO₃]₂, which blocks further cross‐link formation at the N7 site, basic NMR spectroscopic signatures of N1,N7‐bridged Pt^II complexes were identified. Among others, the trinuclear complex trans‐[Pt(NH₃)₂{μ‐(N1‐9MeA‐N7)Pt(NH₃)₃}₂][ClO₄]₆ ? 2H₂O was crystallized and its rotational isomerism in aqueous solution was studied by NMR spectroscopy and DFT calculations. Interestingly, simultaneous Pt^II coordination to N1 and N7 acidifies the exocyclic amino group of the two 9MeA ligands sufficiently to permit replacement of one proton each by a bridging heterometal ion, Hg^II or Cu^II, under mild conditions in water.     

<Emphasis Type="Italic">In-situ</Emphasis> discrimination of the water cluster size distribution in aqueous solution by ToF-SIMS

The size distribution and molecular structure of water clusters play a critical role in the chemical, biological and atmospheric process. The common experimental study of water clusters in aqueous solution is challenged due to the influence of local Hbonding environments on vibration spectroscopies or vacuum requirements for most mass spectrometry technologies. Here, the time-of-flight secondary ion mass spectrometry (ToF-SIMS) combining with a microfluidic chip has been applied to achieve the in-situ discrimination of the size distribution for water clusters in liquid water at room temperature. The results demonstrated that the presented method is highly system stable, reproducible and accurate. The comparison of heavy water with pure water was made to further demonstrate the accuracy of this technique. These results showed that (H₂O)₃H⁺ and (D₂O)₄D⁺ are the most dominant clusters in pure and heavy water, respectively. This one water molecule difference in the dominant cluster size may due to the nuclear quantum effects on water’s hydrogen bonded network. It is the first time to experimentally show the size distribution of water clusters over a wide range (n=1–30) for pure (H₂O) and heavy (D₂O) water from molecular level. This technique provides an achievable method for liquid water, which offers a bridge to close the gap between theoretical and experimental study of water cluster in aqueous solution.     

Calorimetric study of binary systems of tetraethyleneglycol octylether and polyethyleneglycol with water

Calorimetric measurements have been made of the differential enthalpies of solution as a function of composition of both components in the binary systems tetraethyleneglycol octylether (C₈E₄)-water and polyethyleneglycol 400 (PEG)-water, as a function of composition, at three different temperatures. Heat capacity changes for dissolution were calculated from the temperature variation of the solution enthalpies. Excess enthalpies and excess heat capacities of mixing were calculated from the differential enthalpies of solution. All measurements on C₈E₄ were made above the critical micelle concentration (c.m.c.) so the results relate to C₈E₄ in aggregated form. The thermochemical properties of the C₈E₄ and PEG systems with water are similar. The differential solution enthalpy of the organic solute in pure water is fairly exothermic and then increases smoothly with increasing solute content. Likewise the solution enthalpy of water in pure C₈E₄ or PEG is fairly exothermic, but increases steadily to become zero at a water content corresponding to more than five water molecules per ethyleneoxide group. The measurements on the C₈E₄ system at 40°C were made close to the demixing temperature. The results are compared with previously reported results on the 2-butoxyethanol (BE)-water system.     

Sequential bond energies of water to sodium glycine cation

Absolute bond dissociation energies of water to sodium glycine cations and glycine to hydrated sodium cations are determined experimentally by competitive collision-induced dissociation (CID) of Na⁺Gly(H₂O)_x, x = 1–4, with xenon in a guided ion beam tandem mass spectrometer. The cross sections for CID are analyzed to account for unimolecular decay rates, internal energy of reactant ions, multiple ion–molecule collisions, and competition between reaction channels. Experimental results show that the binding energies of water and glycine to the complexes decrease monotonically with increasing number of water molecules. Ab initio calculations at four different levels show good agreement with the experimental bond energies of water to Na⁺Gly(H₂O)_x, x = 0–3, and glycine to Na⁺(H₂O), whereas the bond energies of glycine to Na⁺(H₂O)_x, x = 2–4, are systematically higher than the experimental values. These discrepancies may provide some evidence that these Na⁺Gly(H₂O)_x complexes are trapped in excited state conformers. Both experimental and theoretical results indicate that the sodiated glycine complexes are in their nonzwitterionic forms when solvated by up to four water molecules. The primary binding site for Na⁺ changes from chelation at the amino nitrogen and carbonyl oxygen of glycine for x = 0 and 1 to binding at the C terminus of glycine for x = 2–4. The present characterization of the structures upon sequential hydration indicates that the stability of the zwitterionic form of amino acids in solution is a consequence of being able to solvate all charge centers.     

Artificial photosynthesis by using chloroplasts from spinach adsorbed on a nanocrystalline TiO2 electrode for photovoltaic conversion

Photovoltaic conversion has been achieved by use of chloroplasts (photosynthetic organs) from spinach adsorbed on a nanocrystalline TiO₂ film on an indium tin oxide (ITO) glass electrode (chloroplast/TiO₂ electrode). The shape of the absorption spectrum of the chloroplast/TiO₂ electrode is almost the same that of a dispersion of the chloroplasts. Absorption maxima of the chloroplast/TiO₂ electrode observed at 430, 475, and 670 nm were attributed to carotenoid and chlorophyll molecules, suggesting that chloroplasts have been adsorbed by the nanocrystalline TiO₂ film on the ITO electrode. The photocurrent responses of chloroplast/TiO₂ electrodes were measured by using a solution of 0.1 M tetrabutylammonium hexafluorophosphate in acetonitrile as redox electrolyte in the presence or absence of water and 100 mW cm^?2 irradiation. The photocurrent of the chloroplast/TiO₂ electrode was increased by adding water to the redox electrolyte. The photocurrent responses of chloroplast/TiO₂ electrodes irradiated with monochromatic light (680 nm, the absorption band of photosystem II complexed with evolved oxygen) were measured by use of a solution of 0.1 M tetrabutylammonium hexafluorophosphate in acetonitrile as redox electrolyte in the presence or absence of water. A chloroplast/TiO₂ electrode photocurrent was observed only when the redox electrolyte containing water was used, indicating that the oxygen evolved from water by photosystem II in chloroplasts adsorbed by a nanocrystalline TiO₂ film on an ITO electrode irradiated at 680 nm is reduced to water by the catalytic activity of the platinum electrode. The maximum incident photon-to-current conversion efficiency (IPCE) was 0.8 % on irradiation at 670 nm.     

5-二乙胺基-2-(吡啶-2’-亚氨甲基)苯酚的合成及其对Zn2+的识别

本文利用2-氨基吡啶与4-二乙胺基水杨醛反应合成了5-二乙胺基-2-(吡啶-2’-亚氨甲基)苯酚(探针L),对其结构进行了表征。在DMSO/Tris(6:4, v/v, pH =7.4)溶液中,探针L高选择性荧光“关-开”识别Zn₂₊,在365 nm紫外灯照射下,由无荧光变成蓝色荧光。实验表明,探针L与Zn₂₊的结合比为1:1,结合常数为2.6×10₃ L. mol_-1,检测限为 9.39×10_-7mol/L,pH适用范围为7-11,并可检测水样中的Zn₂₊。     

Structures and isomerization of neutral and zwitterion serine–water clusters: Computational study

Calculations are presented for the structure and the isomerization reaction of various conformers of the bare serine, neutral serine–(H₂O)_n and serine zwitterion–(H₂O)_n (n = 1, 2) clusters. The effects of binding water molecules on the relative stability and the isomerization processes are examined. Hydrogen bonding between serine and the water molecule(s) may significantly affect the relative stability of conformers of the neutral serine–(H₂O)_n (n = 1, 2) clusters. The sidechain (OH group) in serine is found to have a profound effect on the structure and isomerization of serine–(H₂O)_n (n = 1, 2) clusters. Conformers with the hydrogen bonding between water and the hydroxyl group of serine are predicted. A detailed analysis is presented of the isomerization (proton transfer) pathways between the neutral serine–(H₂O)₂ and serine zwitterion–(H₂O)₂ clusters by carrying out the intrinsic reaction coordinate analysis. At least two water molecules need to bind to produce the stable serine zwitterion–water cluster in the gas phase. The isomerization for the serine–(H₂O)₂ cluster proceeds by the concerted double and triple proton transfer mechanism occurring via the binding water molecules, or via the hydroxyl group. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005