Two new thiophosphoramide structures: N,N′,N′′‐tricyclohexylphosphorothioic triamide and O,O′‐diethyl (2‐phenylhydrazin‐1‐yl)thiophosphonate

The compound N,N′,N′′‐tricyclohexylphosphorothioic triamide, C₁₈H₃₆N₃PS or P(S)[NHC₆H₁₁]₃, (I), crystallizes in the space group Pnma with the molecule lying across a mirror plane; one N atom lies on the mirror plane, whereas the bond‐angle sum at the other N atom has a deviation of some 8° from the ideal value of 360° for a planar configuration. The orientation of the atoms attached to this nonplanar N atom corresponds to an anti orientation of the corresponding lone electron pair (LEP) with respect to the P=S group. The P=S bond length of 1.9785 (6) Å is within the expected range for compounds with a P(S)[N]₃ skeleton; however, it is in the region of the longest bond lengths found for analogous structures. This may be due to the involvement of the P=S group in N—H...S=P hydrogen bonds. In O,O′‐diethyl (2‐phenylhydrazin‐1‐yl)thiophosphonate, C₁₀H₁₇N₂O₂PS or P(S)[OC₂H₅]₂[NHNHC₆H₅], (II), the bond‐angle sum at the N atom attached to the phenyl ring is 345.1°, whereas, for the N atom bonded to the P atom, a practically planar environment is observed, with a bond‐angle sum of 359.1°. A Cambridge Structural Database [CSD; Allen (2002). Acta Cryst. B 58 , 380–388] analysis shows a shift of the maximum population of P=S bond lengths in compounds with a P(S)[O]₂[N] skeleton to the shorter bond lengths relative to compounds with a P(S)[N]₃ skeleton. The influence of this difference on the collective tendencies of N...S distances in N—H...S hydrogen bonds for structures with P(S)[N]₃ and P(S)[O]₂[N] segments were studied through a CSD analysis.     

A 1:2 complex of mercury(II) chloride with 1,3‐imidazole‐2‐thione

The Hg atom in the title monomeric complex, di­chloro­bis(3‐imidazolium‐2‐thiol­ato‐S)­mercury(II), [HgCl₂(C₃H₄N₂S)₂], is four‐coordinate having an irregular tetrahedral geometry composed of two Cl atoms [Hg—Cl 2.622 (2) and 2.663 (2) Å] and two thione S atoms [Hg—S 2.445 (2) and 2.462 (2) Å]. The monodentate thione ligand adopts a zwitterionic form and exists as the 3‐imidazolium‐2‐thiol­ate ion. The bond angle S1—Hg—S2 of 130.87 (8)° has the greatest deviation from ideal tetrahedral geometry. Intermolecular hydrogen bonds between two of the four N—H groups and one of the Cl atoms [3.232 (8) and 3.238 (7) Å] stabilize the crystal structure, while the other two N—H groups contribute through the formation of N—H?Cl intramolecular hydrogen bonds with the other Cl atom [3.121 (7) and 3.188 (7) Å].     

Three new [XC(O)NH]P(O)[N(CH2C6H5)2]2 phosphoric triamides (X = CClF2, 3‐F‐C6H4 and 3,5‐F2‐C6H3): a database analysis of tertiary N‐atom geometry in compounds with a C(O)NHP(O)[N]2 core

In the phosphoric triamides N,N,N′,N′‐tetrabenzyl‐N′′‐(2‐chloro‐2,2‐difluoroacetyl)phosphoric triamide, C₃₀H₂₉ClF₂N₃O₂P, (I), N,N,N′,N′‐tetrabenzyl‐N′′‐(3‐fluorobenzoyl)phosphoric triamide, C₃₅H₃₃FN₃O₂P, (II), and N,N,N′,N′‐tetrabenzyl‐N′′‐(3,5‐difluorobenzoyl)phosphoric triamide, C₃₅H₃₂F₂N₃O₂P, (III), the tertiary N atoms of the dibenzylamido groups have sp² character with minimal deviation from planarity. The sums of the three bond angles about the N atoms in (I)–(III) deviate by less than 8° from the planar value of 360°. The geometries of the tertiary N atoms in all phosphoric triamides with C(O)NHP(O)[N]₂ skeletons deposited in the Cambridge Structural Database [CSD; Allen (2002). Acta Cryst. B 58 , 380–388] have been examined and the bond‐angle sums at the two tertiary N atoms (SUM1 and SUM2) and the parameter ΔSUM (= SUM1 − SUM2) considered. It was found that in compounds with a considerable ΔSUM value, the more pyramidal N atoms are usually oriented so that the corresponding lone electron pair is anti with respect to the P=O group. In (I), (II) and (III), the phosphoryl and carbonyl groups, separated by an N atom, are anti with respect to each other. In the C(O)NHP(O) fragment of (I)–(III), the P—N bond is longer and the O—P—N angle is contracted compared with the other two P—N bonds and the O—P—N angles in the molecules. These effects are also seen in analogous compounds deposited in the CSD. Compounds with [C(O)NH]P(O)[N]X (X≠ N), such as compounds with a [C(O)NH]P(O)[N][O] skeleton, have not been considered here. Also, compounds with a [C(O)NH]₂P(O)[N] fragment have not been reported to date. In the crystal structures of all three title compounds, adjacent molecules are linked via pairs of P=O...H—N hydrogen bonds, forming dimers with C_i symmetry.     

Planarity of benzoylhydrazine–dithiocarbazoate tuberculostatics. I. N′‐Methyl‐substituted 3,4‐dichlorobenzoyl monoesters

Methyl 2‐(3,4‐dichlorobenzoyl)‐1‐methylhydrazinecarbodithioate, C₁₀H₁₀Cl₂N₂OS₂, (F1), butyl 2‐(3,4‐dichlorobenzoyl)‐1‐methylhydrazinecarbodithioate, C₁₃H₁₆Cl₂N₂OS₂, (F2), and 3,4‐dichloro‐N‐(2‐sulfanylidene‐1,3‐thiazinan‐3‐yl)benzamide, C₁₁H₁₀Cl₂N₂OS₂, (F3), were studied by X‐ray diffraction to test our hypothesis that planarity of aryloylhydrazinedithiocarbazic acid esters is a prerequisite for tuberculostatic activity. All compounds examined in this study are inactive and nonplanar due to twists along two specific bonds in the central frame of the molecules. The significant twist at the N—N bond, with an C—N—N—C(S) torsion angle of about 85°, results from repulsion caused by a methyl substituent at the N′ atom of the hydrazide group. The other twist is that within the benzoyl group at the C(O)—Ph bond, i.e. the N—C(=O)—C(phenyl)—C torsion angle: the values found in the studied structures (25–30°) are in agreement with those observed in other compounds containing a similar fragment. As some nonplanar benzoyl derivatives are active, it seems that planarity of the hydrazinedithioate fragment is more important for tuberculostatic activity than planarity of the aryloyl group.     

(Z)‐5‐[(5‐Methyl‐1H‐imidazol‐4‐yl)methylidene]‐2‐sulfanylidene‐1,3‐thiazolidin‐4‐one monohydrate: a three‐dimensional hydrogen‐bonded framework structure

The non‐H atoms in the organic component of the title compound, C₈H₇N₃OS₂·H₂O, are almost coplanar, as the dihedral angle between the two ring planes is only 1.8 (2)°; there is a wide C—C—C angle of 127.8 (3)° at the methine C atom linking the two rings. The molecular components are linked into a three‐dimensional framework structure by two‐centre hydrogen bonds of N—H...O and O—H...N types, together with a three‐centre O—H...(N,S) system. Comparisons are made with some (Z)‐5‐arylmethylidene‐2‐sulfanylidene‐1,3‐thiazolidin‐4‐ones.     

4‐Fluoro‐2‐(phospho­no­methyl)­benzene­sulfonic acid monohydrate

The title compound, C₇H₈FO₆PS·H₂O, contains both phospho­nic and sulfonic acid functionalities. An extensive network of O—H?O hydrogen bonds is present in the crystal structure. The three acidic protons are associated with the phospho­nate group. Two protons experience typical hydrogen‐bond contacts with the sulfonate‐O atoms, while the third has a longer covalent bond of 1.05 (3) Å to the phospho­nate‐O atom and a short hydrogen‐bond contact of 1.38 (3) Å to the water O atom (all O—H?O angles are in the range 162–175°). The sulfonate group is positioned so that one S—O bond is nearly coplanar with the phenyl ring [torsion angle O—S—C—C ?8.6 (2)°]. The phospho­nate group is oriented approximately perpendicular to the ring [torsion angle P—C—C—C 99.2 (2)°] with one P—O bond anti to the benzyl C—C bond. The mol­ecules pack in layers in the b–c plane with the water mol­ecules in between adjacent pairs of inverted layers.     

Bis{2‐[(phenylimino)ethyl]‐1H‐pyrrol‐1‐ido‐κ2N,N′}nickel(II): a supramolecular structure formed by C—H...π hydrogen bonds

In the title compound, [Ni(C₁₂H₁₁N₂)₂], the Ni^II cation lies on an inversion centre and has a square‐planar coordination geometry. This transition metal complex is composed of two deprotonated N,N′‐bidentate 2‐[(phenylimino)ethyl]‐1H‐pyrrol‐1‐ide ligands around a central Ni^II cation, with the pyrrolide rings and imine groups lying trans to each other. The Ni—N bond lengths range from 1.894 (3) to 1.939 (2) Å and the bite angle is 83.13 (11)°. The Ni—N(pyrrolide) bond is substantially shorter than the Ni—N(imino) bond. The planes of the phenyl rings make a dihedral angle of 78.79 (9)° with respect to the central NiN₄ plane. The molecules are linked into simple chains by an intermolecular C—H...π interaction involving a phenyl β‐C atom as donor. Intramolecular C—H...π interactions are also present.     

(Acetonitrile){2,6‐bis[1‐(2,4,6‐trimethylphenylimino)ethyl]pyridine}dichloridoruthenium(II) dichloromethane solvate

In the title compound, [RuCl₂(C₂H₃N)(C₂₇H₃₁N₃)]·CH₂Cl₂, the Ru^II ion is six‐coordinated in a distorted octahedral arrangement, with the two Cl atoms located in the apical positions, and the pyridine (py) N atom, the two imino N atoms and the acetonitrile N atom located in the basal plane. The two equatorial Ru—N_imino distances are almost equal (mean 2.087 Å) and are substantially longer than the equatorial Ru—N_py bond [1.921 (4) Å]. It is observed that the N_imino—M—N_py angle for the five‐membered chelate rings of pyridine‐2,6‐diimine complexes is inversely related to the magnitude of the M—N_py bond. The title structure is stabilized by intra‐ and intermolecular C—H...Cl hydrogen bonds, as well as by van der Waals interactions.     

2,2′‐[2,3‐Di­hydro‐2‐(prop‐2‐enyl)‐1H‐isoindole‐1,3‐diyl­idene]bis(propane­di­nitrile)–tetra­thia­fulvalene (1/1), TCPI–TTF

The title complex, C₁₇H₉N₅·C₆H₄S₄, contains π‐deficient bis(di­nitrile) and TTF mol­ecules stacked alternately in columns along the a‐axis direction; the interplanar angle between the TTF molecule and the isoindolinyl C₄N[C(CN)₂]₂ moiety is 1.21 (4)°. The N‐allyl moiety in the TCPI mol­ecule is oriented at an angle of 87.10 (10)° with respect to the five‐membered C₄N ring, and the four C[triple‐bond]N bond lengths range from 1.134 (3) to 1.142 (3) Å, with C—C[triple‐bond]N angles in the range 174.3 (3)–176.9 (2)°. In the TTF system, the S—C bond lengths are 1.726 (3)–1.740 (3) and 1.751 (2)–1.763 (2) Å for the external S—C(H) and internal S—C(S) bonds, respectively.     

(Z)‐2‐[(1‐Phenylsulfonyl‐1H‐indol‐3‐yl)methylene]‐1‐azabicyclo[2.2.2]octan‐3‐one semicarbazone

In crystals of the title compound, C₂₃H₂₃N₅O₃S, the indole system is planar and the phenyl ring of the phenylsulfonyl group makes a dihedral angle with the best plane of the indole system of 77.18 (4)°. The olefinic bond connecting the azabicyclic and indole systems has Z geometry. The geometry adopted by the C=O bond with respect to the N—N bond is trans. The O atom of the carbonyl group of each molecule is hydrogen bonded to the hydrazidic H atom of an adjacent molecule to form an eight‐membered‐ring dimeric structure.     

Bilayers in 4‐iodo‐N‐(2‐iodo‐4‐nitrophenyl)benzamide generated by a combination of an N—H⋯O=C hydrogen bond and two independent iodo–nitro interactions

Molecules of the title compound, C₁₃H₈I₂N₂O₃, are linked into C(4) chains by a single N—H⋯O=C hydrogen bond [H⋯O = 2.10 Å, N⋯O = 2.832 (5) Å and N—H⋯O = 140°]. Two independent two‐centre iodo–nitro interactions, both involving the same O atom but different I atoms [I⋯O = 3.205 (3) and 3.400 (3) Å, and C—I⋯O = 160.4 (2) and 155.7 (2)°], link the hydrogen‐bonded chains into bilayers.     

Ethyl 3‐amino‐6‐phenyl‐4‐tolylthieno[2,3‐b]pyridine‐2‐carboxylate

In the title compound, C₂₃H₂₀N₂O₂S, the central thieno­pyridine ring system is essentially planar, the dihedral angle between the planes of the two rings being 0.3 (2)°. The terminal ethyl carboxyl­ate group is twisted by 26.7 (3)° away from the central ring system. A short intramolecular hydrogen bond involving the amino N atom and the carbonyl O atom [N⋯O = 2.806 (4) Å] forms a pseudo‐six‐membered ring. Significant intermolecular C—H⋯N, C—H⋯O and C—H⋯π interactions contribute strongly to the stability of the structure, along with weak π–π‐stacking interactions.     

Trimethyl[3‐methyl‐1‐(o‐tolenesulfonyl)indol‐2‐ylmethyl]ammonium iodide and benzyl[3‐bromo‐1‐(phenylsulfonyl)indol‐2‐ylmethyl]tolylamine

The title compounds, C₂₀H₂₅N₂O₂S⁺·I^?, (I), and C₂₉H₂₅BrN₂O₂S, (II), respectively, both crystallize in space group P. The pyrrole ring subtends an angle with the sulfonyl group of 33.6° in (I) and 21.5° in (II). The phenyl ring of the sulfonyl substituent makes a dihedral angle with the best plane of the indole moiety of 81.6° in (I) and 67.2° in (II). The lengthening or shortening of the C—N bond distances in both compounds is due to the electron‐withdrawing character of the phenyl­sulfonyl group. The S atoms are in distorted tetrahedral configurations. The molecular structures are stabilized by C—H?O and C—H?I interactions in (I), and by C—H?O and C—H?N interactions in (II).     

(Acetonitrile){2,6‐bis­[1‐(2‐ethyl‐6‐methyl­phenyl­imino)­ethyl]­pyridine}­dichloro­ruthenium(II) dichloro­methane hemisolvate: a chain of edge‐fused R66(24) rings

In the title compound, [RuCl₂(C₂H₃N)(C₂₇H₃₁N₃)]·0.5CH₂Cl₂, the Ru^II ion is six‐coordinated in a distorted octa­hedral arrangement, with the two Cl atoms located in the apical positions, and the pyridine (py) N atom, the two imino N atoms and the acetonitrile N atom located in the basal plane. The dichloromethane solvent mol­ecule lies on a twofold axis. The two equatorial Ru—N_imino distances are almost equal (mean 2.089 Å) and are substantially longer than the equatorial Ru—N_py bond [1.914 (4) Å]. It is observed that the N_imino—M—N_py bond angle for the five‐membered chelate rings of pyridine‐2,6‐diimine complexes is inversely related to the magnitude of the M—N_py bond. The title structure is stabilized by intra‐ and inter­molecular C—H⋯Cl hydrogen bonds. The inter­molecular hydrogen bonds form an R₆⁶(24) ring and a chain of edge‐fused rings running parallel to the [001] direction.     

Two N‐(2‐phenylethyl)nitroaniline derivatives as precursors for slow and sustained nitric oxide release agents

Notwithstanding its simple structure, the chemistry of nitric oxide (NO) is complex. As a radical, NO is highly reactive. NO also has profound effects on the cardiovascular system. In order to regulate NO levels, direct therapeutic interventions include the development of numerous NO donors. Most of these donors release NO in a single high‐concentration burst, which is deleterious. N‐Nitrosated secondary amines release NO in a slow, sustained, and rate‐tunable manner. Two new precursors to sustained NO‐releasing materials have been characterized. N‐[2‐(3,4‐Dimethoxyphenyl)ethyl]‐2,4‐dinitroaniline, C₁₆H₁₇N₃O₆, (I), crystallizes with one independent molecule in the asymmetric unit. The adjacent amine and nitro groups form an intramolecular N—H…O hydrogen bond. The anti conformation about the phenylethyl‐to‐aniline C—N bond leads to the planes of the arene and aniline rings being approximately perpendicular. Molecules are linked into dimers by weak intermolecular N—H…O hydrogen bonds such that each amine H atom participates in a three‐center interaction with two nitro O atoms. The dimers pack so that the arene rings of adjacent molecules are not parallel and π–π interactions do not appear to be favored. N‐(4‐Methylsulfonyl‐2‐nitrophenyl)‐l ‐phenylalanine, C₁₆H₁₆N₂O₆S, (II), with an optically active center, also crystallizes with one unique molecule in the asymmetric unit. The l enantiomer was established via the configuration of the starting material and was confirmed by refinement of the Flack parameter. As in (I), there is an intramolecular N—H…O hydrogen bond between adjacent amine and nitro groups. The conformation of the molecule is such that the arene rings display a dihedral angle of ca 60°. Unlike (I), molecules are not linked via intermolecular N—H…O hydrogen bonds. Rather, the carboxylic acid H atom forms a classic, approximately linear, O—H…O hydrogen bond with a sulfone O atom. Pairs of molecules related by twofold rotation axes are linked into dimers by two such interactions. The packing pattern features a zigzag arrangement of the arene rings without apparent π–π interactions. These structures are compared with reported analogues, revealing significant differences in molecular conformation, intermolecular interactions, and packing that result from modest changes in functional groups. The structures are discussed in terms of potential NO‐release capability.     

(1R,2S)‐2‐[N‐Methyl‐N‐(4‐toluene­sulfonyl)amino]‐1‐phenylpropan‐1‐ol

In the title compound, C₁₇H₂₁NO₃S, the S atom is in a distorted tetrahedral geometry and the N atom exhibits sp² character. The antiperiplanar conformation is observed for the N and hydroxyl‐O atoms and the torsion angle around the N—C linkage is ?136.3 (2)°. The mol­ecules are linked by O—H?O intermolecular hydrogen bonds to form an infinite one‐dimensional chains along the c axis.     

Two trans‐4‐aminoazoxybenzenes

Two isomeric trans‐4‐amino­azoxy­benzenes, trans‐1‐(4‐amino­phenyl)‐2‐phenyl­diazene 2‐oxide (α, C₁₂H₁₁N₃O) and trans‐2‐(4‐amino­phenyl)‐1‐phenyl­diazene 2‐oxide (β, C₁₂H₁₁N₃O), have been characterized by X‐ray diffraction. The α isomer is almost planar, having torsion angles along the C_aryl—N bonds of only 4.9 (2) and 8.0 (2)°. The relatively short C_aryl—N bond to the non‐oxidized site of the azoxy group [1.401 (2) Å], together with the significant quinoid deformation of the respective phenyl ring, is evidence of conjugation between the aromatic sextet and the π‐electron system of the azoxy group. The geometry of the β isomer is different. The non‐substituted phenyl ring is twisted with respect to the NNO plane by ca 50°, whereas the substituted ring is almost coplanar with the NNO plane. The non‐oxidized N atom in the β isomer has increased sp³ character, which leads to a decrease in the N—N—C bond angle to 116.8 (2)°, in contrast with 120.9 (1)° for the α isomer. The deformation of the C—C—C angles (1–2°) in the phenyl rings at the substitution positions is evidence of the different character of the oxidized and non‐oxidized N atoms of the azoxy group. In the crystal structures, mol­ecules of both isomers are arranged in chains connected by weak N—H?O (α and β) and N—H?N (β) hydrogen bonds.     

Two isomers of Pd2(S2NC7H4)4

The dichloromethane solvates of the isomers tetrakis(μ‐1,3‐benzothiazole‐2‐thiolato)‐κ⁴N:S;κ⁴S:N‐dipalladium(II)(Pd—Pd), (I), and tetrakis(μ‐1,3‐benzothiazole‐2‐thiolato)‐κ⁶N:S;κ²S:N‐dipalladium(II)(Pd—Pd), (II), both [Pd₂(C₇H₄NS₂)₄]·CH₂Cl₂, have been synthesized in the presence of (o‐isopropylphenyl)diphenylphosphane and (o‐methylphenyl)diphenylphosphane. Both isomers form a lantern‐type structure, where isomer (I) displays a regular and symmetric coordination and isomer (II) an asymmetric and distorted structure. In (I), sitting on an centre of inversion, two 1,3‐benzothiazole‐2‐thiolate units are bonded by a Pd—N bond to one Pd atom and by a Pd—S bond to the other Pd atom, and the other two benzothiazolethiolate units are bonded to the same Pd atoms by, respectively, a Pd—S and a Pd—N bond. In (II), three benzothiazolethiolate units are bonded by a Pd—N bond to one Pd atom and by a Pd—S bond to the other Pd atom, and the fourth benzothiazolethiolate unit is bonded to the same Pd atoms by, respectively, a Pd—S bond and a Pd—N bond.     

7‐Fluorotubercidin: a halogenated derivative of a naturally occurring nucleoside antimetabolite

The title compound [systematic name: 4‐amino‐5‐fluoro‐7‐(β‐d ‐ribofuranosyl)‐7H‐pyrrolo[2,3‐d]pyrimidine], C₁₁H₁₃FN₄O₄, exhibits an anti glycosylic bond conformation, with a χ torsion angle of −124.7 (3)°. The furanose moiety shows a twisted C2′‐endo sugar pucker (S‐type), with P = 169.8 (3)° and τ_m = 38.7 (2)°. The orientation of the exocyclic C4′—C5′ bond is +sc (gauche, gauche), with a γ torsion angle of 59.3 (3)°. The nucleobases are stacked head‐to‐head. The extended crystal structure is a three‐dimensional hydrogen‐bond network involving O—H...O, O—H...N and N—H...O hydrogen bonds. The crystal structure of the title nucleoside demonstrates that the C—C bonds nearest the F atom of the pyrrole system are significantly shortened by the electronegative halogen atom.     

(2‐Amino­ethoxy)­bis(2‐thienyl)­boron

In the five‐membered ring in the title compound, (2‐amino­ethoxy)­bis(2‐thienyl)­boron, C₁₀H₁₂BNOS_2, the B atom is four‐coordinate with dimensions N—B 1.654 (3), O—B 1.479 (3), and C—B 1.606 (3) and 1.609 (3) Å. An intermolecular hydrogen bond between an amino H atom and the ethoxy O atom links the mol­ecules into infinite chains along the a axis. Only one of the two amino H atoms is involved in hydrogen bonding because there is only the one acceptor atom, the ethoxy O atom, and the molecular geometry precludes formation of a second hydrogen bond by the second amino H atom.