Conformational studies by dynamic NMR. 90. Structure and stereodynamics of the rotamers of di- and tri-alpha-naphthylphenyl derivatives

The crystal structure of 1,3,5-tris(4-methylnaphth-1-yl)benzene, 1, shows one naphthyl substituent in an anti relationship to the other two. On the other hand, low temperature (-70 degrees C) (1)H NMR spectra in solution show the presence of a second rotational conformer (rotamer) having all the three naphthyl substituents in a syn relationship. The interconversion barrier between the anti (77%) and syn (23%) rotamers of 1 was determined by line shape simulation of the temperature-dependent NMR spectra (Delta G(++) = 12.1 kcal mol(-1)). In the analogous disubstituted meta and paraderivatives, that is, 1,3- and 1,4-bis(4-methylnaphth-1-yl)benzene (2 and 3, respectively), the presence of both the anti and syn rotamers was also detected by low-temperature NMR spectroscopy. In the latter compounds, the proportions of the anti and syn forms are nearly equal, and the corresponding anti to syn interconversion barriers were found to be lower (11.4 and 11.1(5) kcal mol(-1), respectively) than those of the trisubstituted derivative 1.     

Conformational Studies by Dynamic NMR. 57.(1) Stereodynamics of Syn-Anti Interconversion of Disubstituted Acyl Durenes

The orthogonal syn and anti isomers, originated by the restricted rotation about the Ar-C(O)Bu(t) single bonds in 1,4-bis(2,2-dimethylpropanoyl)durene (2e), have been separated by preparative thin layer chromatography. In solution they reach an equilibrium where the syn-anti ratio depends upon the polarity of the solvent. This allowed us to assign the anti structure, which has a null dipole moment, to the least retained isomer. The free energy of activation (DeltaG) for the interconversion was found to be 22.5 kcal mol(-)(1), a value high enough for identifying these species as configurational isomers. When less hindered derivatives, also having two RCO (R = Pr(i), Et, Me) substituents in the positions 1,4 of the durene moiety, were examined, the syn and anti forms could be detected only at low temperature by means of NMR spectroscopy. The corresponding interconversion barriers (DeltaG = 13.4, 11.7, 10.9 kcal mol(-)(1), respectively) are, in fact, much lower than for R = Bu(t), indicating that in these cases we are dealing with conformational rather than with configurational isomers.     

Restricted rotation in 9-phenyl-anthracenes: a prediction fulfilled

The calculated phenyl rotation barrier in 9-phenylanthracene has been reported as ~21 kcal mol(-1), but experimental verification of this barrier is limited by its intrinsic symmetry. V-T NMR indicated the barrier to interconversion of the syn (C(2v)) and anti (C(2h)) rotamers of 9,10-bis(3-fluorophenyl)anthracene to be ~21 kcal mol(-1). Likewise, the V-T NMR spectra of 9-(1-naphthyl)-10-phenylanthracene reveal that the rotational barrier of the unsubstituted phenyl ring is at least 21 kcal mol(-1).     

Conformational analysis of 1-butyl-3-methylimidazolium by CCSD(T) level ab initio calculations: effects of neighboring anions

Conformational energies for the butyl group of 1-butyl-3-methylimidazolium (bmim) were calculated by high-level ab initio methods. Estimated relative energies for the TT, GT and G'T rotamers of an isolated bmim cation at the CCSD(T)/cc-pVTZ level are 0.0 -0.02 and -0.50 kcal/mol, respectively. The close contact of a Cl anion to theC(2)-H of imidazolium considerably increases the relative stability of the GT rotamer. Estimated relative energies for the three rotamers of the [bmim]Cl complex, in which the Cl anion exists close to the C(2)-H, are 0.0, -1.61 and -0.25 kcal/mol, respectively. The GT rotamer is favored by the strong attractive electrostatic interaction between the bmim cation and Cl anion. The C(2)-H group in the GT rotamer has a larger positive charge compared with those in the TT and G'T rotamers. The contact of a Br anion to the C(2)-H also stabilizes the GT rotamer. The effects of the Cl anion close to the C(4)-Hand C(5)-Hare small. The anion effects suggest that the GT rotamer is the most stable in ionic liquids. The positive charge on imidazolium ring does not largely change the conformational energies. Estimated relative energies for the three rotamers of N-butylimidazole (0.0, -0.29 and -0.75 kcal/mol, respectively) are not largely different from those for isolated bmim. Calculated MP2/cc-pVTZ level torsional potential for the C im-N im-C-C bond has a minimum when the torsional angle is close to 90 degrees. Coplanar conformation is not a stable structure. Calculated torsional barrier height between the two nonplanar minima is less than 1 kcal/mol.     

Structure, stability, and interconversion barriers of the rotamers of cis-[Pt(II)Cl(2)(quinoline)2] and cis-[Pt(II)Cl(2)(3-bromoquinoline)(quinoline)] from X-ray crystallography, NMR spectroscopy and molecular mechanics evidence

Reported are the preparations of cis-[PtCl(2)(quinoline)(2)] and cis-[PtCl(2)(3-bromoquinoline)(quinoline)] and an investigation of the stabilities and interconversion of the rotamer forms of these complexes. Both head-to-head (HTH) and head-to-tail (HTT) rotamer forms are found in the crystal structure of cis-[PtCl(2)(quinoline)(2)]. The NOESY NMR spectrum of cis-[PtCl(2)(quinoline)(2)] in dmf-d(7) at 300 K is consistent with conformational exchange brought about by rotation about the Pt-N(quinoline) bonds. H.H nonbonded distances between H atoms of the two different quinoline ligands were determined from NOESY data, and these distances are in accord with those observed in the crystal structure and derived from molecular mechanics models. cis-[PtCl(2)(3-bromoquinoline)(quinoline)] was prepared to alleviate the symmetry-imposed absence of inter-ring H2/H2 and H8/H8 NOESY cross-peaks for cis-[PtCl(2)(quinoline)(2)]. Molecular mechanics calculations on the complexes show the HTT rotamers to be 1-2 kJ mol(-)(1) more stable than the HTH forms, consistent with the (1)H spectra where the intensities of resonances for the two forms are approximately equal. Variable-temperature (1)H NMR spectra of cis-[PtCl(2)(quinoline)(2)] in dmf-d(7) indicate a rotational energy barrier of 82 +/- 4 kJ mol(-)(1). Variable-temperature (1)H NMR spectra indicate that the Br substituent on the quinoline ring does not affect the energy barrier to interconversion between the HTT and HTH forms (79 +/- 5 kJ mol(-)(1)). The steric contribution to the rotation barrier was calculated using molecular mechanics calculations and was found to be approximately 40 kJ mol(-)(1), pointing to a possible need for an electronic component to be included in future models.     

Synthesis and stereodynamics of highly constrained 1,8-bis(2,2'-dialkyl-4,4'-diquinolyl)naphthalenes

The syn and anti isomers of axially chiral 1,8-diquinolylnaphthalenes have been synthesized via Pd-catalyzed Stille coupling of 1,8-dibromonaphthalene and 2-alkyl-4-trimethylstannylquinolines. Optimization of the cross-coupling reaction allowed the preparation of highly constrained 1,8-bis(2,2'-dimethyl-4,4'-diquinolyl)naphthalene, 2, and 1,8-bis(2,2'-diisopropyl-4,4'-diquinolyl)naphthalene, 3, in 42% and 41% yield, respectively. Employing Pd(PPh(3))(4) and CuO as the cocatalysts in the coupling reaction of 1,8-dibromonaphthalene and 2-alkyl-4-trimethylstannylquinolines proved to be superior over other catalysts such as PdCl(2)(dppf), Pd(2)(dba)(3)/P(t-Bu)(3), and POPd. The C(2)-symmetric anti isomers of 2 and 3 were found to be more stable than the corresponding meso syn isomer. The ratio of the two enantiomeric anti conformers to the syn conformer was determined as 7.9:1 for 2 and 8.6:1 for 3 by NMR and HPLC analysis. The atropisomers of 2 and 3 were found to be stable to rotation about the chiral axis at room temperature and all three stereoisomers of 2 were isolated by semipreparative HPLC on a Chiralpak AD column. The diastereoisomers of 3 were separated via preferential crystallization of the anti isomers from diethyl ether. Slow syn/anti interconversion was observed for both atropisomers at enhanced temperature, and the diastereomerization and enantiomerization processes were monitored by NMR and HPLC. The Gibbs activation energy, DeltaG++, for the isomerization of 2 was determined as 116.0 (112.1) kJ/mol for the conversion of the anti (syn) to the syn (anti) isomer at 71.0 degrees C. The rotational energy barrier of 3 was determined as 115.2 (111.1) kJ/mol for the conversion of the anti (syn) to the syn (anti) isomer at 66.2 degrees C.     

Unusually low barrier to carbamate C-N rotation

The barrier for rotation about an N-alkylcarbamate C(carbonyl)-N bond is around 16 kcal/mol. In the case of an N-phenylcarbamate, the rotational barrier is lowered to 12.5 kcal/mol, but with N-(2-pyrimidyl)carbamates the barriers are so low (<9 kcal/mol) that the syn and anti rotamers cannot be observed as separate signals by 500 MHz NMR spectroscopy at 183 K. X-ray and computational data show that the N-(2-pyrimidyl) carbamates have C(carbonyl)-N bonds that are on average 0.03 A longer than for related N-phenylcarbamates. The computational results trace the origin of the effect to increased single bond character for the C(carbonyl)-N bond due to the increased electron-withdrawing ability of the pyrimidyl ring.     

Rotational energy barrier of 2-(2',6'-dihydroxyphenyl)benzoxazole: a case study by NMR

2-(2'-Hydroxyphenyl)benzoxazole (HBO) derivatives represent an important class of luminescent materials, as they can undergo excited state intramolecular proton transfer (ESIPT). The material's ESIPT properties are dependent on the ratio of two different rotamers, whose interconversion is poorly understood. By using HBO derivative 4, the rotational energy barrier of 2- (2',6'-hydroxyphenyl)benzoxazole is determined to be 10.5 kcal/mol by variable-temperature NMR. Although a HBO derivative typically exhibits two rotamers with O···H-O (e.g., 1a) and N···H-O bonding (e.g., 1b), correlation of NMR with fluorescence data reveals that the rotamer with N···H-O bonding is predominant in the solution.     

An NMR and solvation study of rotational isomerism in epihalohydrins

The ¹H NMR spectra of epifluoro, chloro- and bromohydrin have been analysed in a number of solvents of varying polarity. Ab initio and molecular mechanism calculations together with solvation theory allowed an analysis of the observed solvent dependence of the proton couplings in terms of the anti and gauche rotamers only, the syn rotamer being of very small population: The Ga che-anti energy difference in the vapour is 0.1, 0.5 and 0.7 kcal mol^-1 for the three compounds respectively, though these relative energies may be reversed in solutions in which the gauche form is relatively more stabilized. The trans-oriented vicinal coupling has values of 7.3, 8.4 and 9.1 Hz for F, Cl, and Br respectively. Only one long-range coupling showed a pronounced orientation dependence, due to an approximately planar zizag orientation in the gauche rotamer.     

Protonated tert-pentyl dication (C5H122+, isopentane dication)

Structures of the tert-pentyl cation (C(5)H(11)(+)) and its protonated dication (C(5)H(12)(2+), isopentane dication) were studied using ab initio methods at the MP2/cc-pVTZ level. Both C-C and C-H hyperconjugatively stabilized structures 1 and 2 , respectively, were found to be minima on the potential energy surface (PES) of the tert-pentyl cation. Structure 1 was computed to be about as stable as structure 2 (slightly more stable by 0.5 kcal mol(-1)). Inter-conversion between 1 and 2 through transition state 3 has a kinetic barrier of only 1.5 kcal mol(-1). The C-H protonated form (H(3)C)(2)C(+)CH(2)CH(4)(+)4 was found to be the global minimum for the protonated tert-pentyl dication. Charges and (13)C NMR chemical shifts of the dication 4 were calculated and compared to those of monocation 1 to study the effect of the additional charge in the dication.     

Matrix-isolation infrared spectroscopy of the rotational isomers of 1,2-, 1,3-, and 1,4-benzenedicarboxaldehyde

Rotational isomers (rotamers) of the three structural isomers of benzenedicarboxaldehydes (1,2-, 1,3-, and 1,4-derivatives) have been investigated in detail using matrix-isolation infrared spectroscopy in the 600-4000 cm-1 region, combined with UV photoexcitation and density-functional theory (DFT) calculations. Two rotamers were identified for 1,2- and 1,4-benzenedicarboxaldehyde (1,2- and 1,4-BDA, respectively), while three rotamers were identified for 1,3-benzenedicarboxaldehyde (1,3-BDA) in infrared spectra upon UV-irradiation. Most of the observed infrared bands of each rotamer have been assigned. The energetic relationships among the rotamers were revealed based on the infrared data and the DFT calculations. It is shown that the intramolecular C-H...H-C interaction in the H-syn rotamer or the C-H...O=C hydrogen bonding in the anti rotamer of 1,2-BDA results in the blue-shift of the aldehyde C-H stretching band and the shortening of the aldehyde C-H bond length. Both photoinduced rotational isomerization and rearrangement were observed upon UV irradiation for 1,2-BDA. The structure of the major enol isomer formed as the result of the photochemical rearrangement of 1,2-BDA is determined.     

NMR Studies of Solvent Effect on Internal Rotation in Some Non-Symmetrical 1,2-Disubstituted Ethanes

The A₂B₂ system of PMR spectra of 3-bromopropionic acid, 3-chloropropionic acid, 3-bromopropionitrile, and 3-chloropropionitrile exhibit appreciable solvent effect at room temperature. NMR spectroscopic parameters of A₂B₂ spectrum as well as physical parameters related to internal rotation, i. e. the highest energy barrier and the energy difference between rotamers, were determined for these compounds in the medium of various solvents. It was found that in the case of 3-bromopropionic acid, the trans rotamer is more stable than the gauche rotamers, and the energy difference decreases with increasing dielectric constant of solvent. While in the case of 3-bromopropionitrile, the gauche rotamers were found to be more stable than the trans rotamer and the energy difference increases with increasing dielectric constant of solvent. In the remaining two compounds, 3-chloropropionic acid and 3-chloropropionitrile, both trans and gauche rotamers are equally stable in a solvent of low dielectric constant, however in a solvent of higher dielectric constant, the gauche rotamers become more stable than the trans rotamer and the energy difference becomes more pronounced with increasing dielectric constant of solvent.     

Emission spectra and electronic energy levels of the rotational isomers of pyridinecarboxaldehyde vapors

Emission and excitation spectra of 2-, 3- and 4-pyridinecarboxaldehyde (2-, 3- and 4-PCA, respectively) vapors have been measured at different temperatures and compared to one another. The emission spectra of these vapors are shown to consist of the T(1)(n, pi) --> S(0) phosphorescence accompanied by the weak thermally activated S(1)(n, pi) --> S(0) delayed fluorescence. Two peaks originating from the two rotamers (syn and anti) have been identified in the fluorescence, phosphorescence and excitation spectra of 3-PCA vapor. Analyses of the temperature dependence and vibrational structure of the spectra of 3-PCA vapor provide the syn-anti energy difference of 190 +/- 30 cm(-1) in the T(1) (n, pi) state, 200 +/- 30 cm(-1) in the S(1)(n, pi) state, and 290 +/- 35 cm(-1) in the ground state. The ground-state energy difference is in agreement with the result of density functional theory (DFT) calculation for 3-PCA vapor. DFT calculation demonstrated also that the syn rotamer exists as a less stable isomer in the ground state for 2- and 3-PCA vapors.     

Structural and conformational properties of 1,2-propadienylphosphine (allenylphosphine) studied by microwave spectroscopy and quantum chemical calculations

1,2-Propadienylphosphine (allenylphosphine), H(2)C=C=CHPH(2), has been investigated by Stark and Fourier transform microwave spectroscopy. Two rotameric forms denoted syn and gauche have been assigned. The syn form has a symmetry plane (C(s)() symmetry) where the lone electron pair of phosphorus points toward the double bonds. The phosphino group is rotated roughly 120 degrees from this position in the gauche rotamer. The dipole moment of syn was determined to be mu(a) = 1.613(23), mu(b) = 2.347(24), mu(c) = 0 (for symmetry reasons), and mu(tot) = 2.848(28) x 10(-30) C m [0.854(8) D]. The energy difference between the two forms was found to be 2.1(4) kJ/mol from relative intensity measurements with syn as the more stable conformer. Extensive quantum chemical calculations have been carried out and accurate equilibrium structures have been determined for these two rotamers, as well as for the corresponding two conformers of vinylphosphine (H(2)C=CHPH(2)).     

Restricted rotation in unbridged sandwich complexes: rotational behavior of closo-[Co(eta 5-NC4H4)(C2B9H11)] derivatives

Rotation about the centroid/metal/centroid axis in ferrocene is facile; the activation energy is 1-5 kcal mol(-1). The structurally similar sandwich complexes derived from closo-[3-Co(eta5-NC4H4)-1,2-C2B9H11] (1) have a different rotational habit. In 1, the cis rotamer in which the pyrrolyl nitrogen atom bisects the carboranyl cluster atoms is 3.5 kcal mol(-1) more stable in energy than the rotamer that is second lowest in energy. This cis rotamer is wide, spanning 216 degrees , and may be split into three rotamers of almost equal energy by substituting the N and the carboranyl carbon atoms adequately. To support this statement, closo-[3-Co(eta5-NC4H4)-1,2-(CH3)2-1,2-C2B9H9] (2), closo-[3-Co(eta5-NC4H4)-1,2-(mu-CH2)3-1,2-C2B9H9] 3, 2-->BF3, and 3-->BF3 have been prepared. Two rotamers are found at low temperature for 2-->BF(3) and 3-->BF3. Compounds 2, 3, and 1-->BF3 behave similarly to 1. Rotational energy barriers and the relative populations of the different energy states are calculated from 1H DNMR spectroscopy (DNMR, dynamic NMR). These results agree with those of semiempirical calculations. Without exception, the cis rotamer is energetically the more stable. The fixed conformation of 1 assists in elucidating the rotational preferences of the [3,3'-Co(1,2-C2B9H11)2]- ion in the absence of steric hindrance; the [3,3'-Co(1,2-C2B9H11)2]- ion is commonly accepted to present a cisoid orientation. Complex 1 is electronically similar to the [3,3'-Co(1,2-C2B9H11)2]- ion. Both have heteroatoms in the pi ligands, and they have the same electronegativity difference between the constituent atoms. This leads to a view of the [NC4H4]- as [7,8-C2B9H11]2- ion, with no steric implications. Therefore the [3,3'-Co(1,2-C2B9H11)2]- ion should be considered to have a cisoid structure, and the different rotamers observed to be the result of steric factors and of the interaction of the counterion with either B-H groups and/or ancillary ligands. The rotamer adopted is the one with the atoms holding the negative charges furthest apart.     

Conformational Study of 8—C—glucosyl—prunetin by Dynamic NMR Spectroscopy

By means of variable temperature NMR spectra,conformation of 8-C-glucosyl prunetin, isolated from the leaves of Dalbergia hainanensis (Leguminosae), was studied. The restricted rotation around the C(sp^3)-C(sp^2) bond in the C-glucosides isoflavonoid results in two main conformers (syn and anti). With the help of MM calculation, the preferred conformation A has H-1″ gauche to the 7-OCH3. The barrier to rotation was 18.1 kcal/mol. This result agrees with the calculated value 16.2 kcal/mol of free energy of activation for the interconversion between the conformers.     

The open-chain trioxide CF3OC(O)OOOC(O)OCF3

The open-chain trioxide CF(3)OC(O)OOOC(O)OCF(3) is synthesised by a photochemical reaction of CF(3)C(O)OC(O)CF(3), CO and O(2) under a low-pressure mercury lamp at -40 degrees C. The isolated trioxide is a colourless solid at -40 degrees C and is characterised by IR, Raman, UV and NMR spectroscopy. The compound is thermally stable up to -30 degrees C and decomposes with a half-life of 1 min at room temperature. Between -15 and +14 degrees C the activation energy for the dissociation is 86.5 kJ mol(-1) (20.7 kcal mol(-1)). Quantum chemical calculations have been performed to support the vibrational assignment and to discuss the existence of rotamers.     

Stereomutations of two-bladed propeller derivatives: ortho-substituted diaryl ethylene and diaryl ketone

Stereochemical analysis, supported by ab initio computations, predicts the existence of three possible stable helical conformers for o,o'-diisopropyl-1,1'-diphenylethylene (1) and o,o'-diisopropylbenzophenone (2). At low temperature the NMR spectra of 1 showed distinct sets of signals for these conformers, thus allowing the measurement of the three barriers involved in the related stereomutation processes to be obtained (DeltaG=6.45, 4.65, and < or =4.0 kcal mol(-1)). The NMR spectra also indicate that the asymmetric conformer (C1 point group) is the most stable one in solution, as anticipated by calculations. X-ray diffraction confirmed that this structure is that adopted in the crystalline state. On the other hand, o,o'-diisopropylbenzophenone (2) is predicted by calculations to exist essentially as a C2-type conformer, a result that was confirmed by the low-temperature NMR spectra. The interconversion barrier for the enantiomeric forms of this conformer was also measured (DeltaG=6.3(5) kcal mol(-1)).     

Influence of carrier ligand NH hydrogen bonding to the O6 and phosphate group of guanine nucleotides in platinum complexes with a single guanine ligand

Coordinated N,N',N"-trimethyldiethylenetriamine (Me3dien) has several possible configurations: two have mirror symmetry (R,S configurations at the terminal nitrogens) and the terminal N-Me's anti or syn with respect to the central N-Me (anti-(R,S) and syn-(R,S) isomers, respectively), and two are nonsymmetrical (R,R and S,S configurations at terminal nitrogens, rac denotes a 1:1 mixture of the two isomers). For each configuration, two Me3dienPtG atropisomers can be formed (anti or syn orientation of central N-Me and G 06, G = guanine derivative), and these can be observed since the terminal N-Me's decrease the rate of G rotation about the Pt-N7 bond. In symmetrical syn-(R,S)-Me3dienPtG derivatives with G = 9-EtG and 3'-GMP, the anti rotamer, which can form O6-NH H-bonds, was slightly favored over the syn rotamer but never more than 2:1. This anti rotamer is also favored by lower steric repulsion between the terminal N-Me's and G O6; thus, the contribution of O6-NH H-bonding to the stability of the anti rotamer could be rather small. With G = 5'-GMP, an O6-NH H-bond in the anti rotamer and a phosphate-NH H-bond in the syn rotamer can form. Only the syn rotamer was detected in solution, indicating that NH H-bonds to 5'-phosphate are far more important than to O6, particularly since steric factors favor the anti rotamer. Interconversion between rotamers was faster for syn-(R,S)- than for rac-Me3dien derivatives. This appears to be determined by a smaller steric impediment to G rotation of two "quasi equatorial" N-Me's, both on one side of the platinum coordination plane (syn-(R,S) isomer), than one "quasi equatorial" and one "quasi axial" N-Me on either side of the coordination plane (rac isomer).