Structure and property of the hydrogen bonding complex between triazines and water

The study of the intermolecular interactions that drive the solvation of six-membered nitrogenated aromatic rings is of particular importance since they are known to constitute key building blocks of pro- teins and nucleotides[1―5]. The investigation of the 1:1 adduct of these molecules with water will be the first step in the understanding of such interactions. These molecules possess two different proton-acceptor sites: the ring π cloud and the lone pairs of electrons on the nitrogen atoms…     

Influence of solvent on the yield of singlet oxygen upon the chloride ion-catalyzed decomposition of dimethyldioxirane

The excitation yield of the singlet molecular oxygen ¹Δ _g [φ(¹O₂)] in the reaction of the dimethyldioxirane with the chloride ion in benzene, acetone, methylene chloride, and acetonitrile solutions has been determined. The φ(¹O₂) value depends on the solvent nature and is in the range 50–84%. Correlation between the value of the singlet oxygen yield and the Kamlet-Taft parameter (α) characterizing the acidity of the solvent as a hydrogen bond donor has been established: the higher the α value, the higher the ¹O₂ yield.     

Two scandium–biuret complexes: [Sc(C2H5N3O2)(H2O)5]Cl3·H2O and [Sc(C2H5N3O2)4](NO3)3

The scandium(III) cations in the structures of pentaaqua(biuret‐κ²O,O′)scandium(III) trichloride monohydrate, [Sc(C₂H₅N₃O₂)(H₂O)₅]Cl₃·H₂O, (I), and tetrakis(biuret‐κ²O,O′)scandium(III) trinitrate, [Sc(C₂H₅N₃O₂)₄](NO₃)₃, (II), are found to adopt very different coordinations with the same biuret ligand. The roles of hydrogen bonding and the counter‐ion in the establishment of the structures are described. In (I), the Sc³⁺ cation adopts a fairly regular pentagonal bipyramidal coordination geometry arising from one O,O′‐bidentate biuret molecule and five water molecules. A dense network of N—H...Cl, O—H...O and O—H...Cl hydrogen bonds help to establish the packing, resulting in dimeric associations of two cations and two water molecules. In (II), the Sc³⁺ cation (site symmetry 2) adopts a slightly squashed square‐antiprismatic geometry arising from four O,O′‐bidentate biuret molecules. A network of N—H...O hydrogen bonds help to establish the packing, which features [010] chains of cations. One of the nitrate ions is disordered about an inversion centre. Both structures form three‐dimensional hydrogen‐bond networks.     

Osmotic Coefficients of the Li<Subscript>2</Subscript>B<Subscript>4</Subscript>O<Subscript>7</Subscript>+LiCl + H<Subscript>2</Subscript>O System at <Emphasis Type="Italic">T</Emphasis>=273.15 K

Osmotic coefficients and water activities for the Li₂B₄O₇+LiCl+H₂O system have been measured at T=273.15 K by the isopiestic method, using an improved apparatus. Two types of osmotic coefficients, φ _S and φ _E, were determined. φ _S is based on the stoichiometric molalities of the solute Li₂B₄O₇(aq), and φ _E is based on equilibrium molalities from consideration of the equilibrium speciation into H₃BO₃,B(OH)₄⁻ and B₃O₃(OH)₄⁻. The stoichiometric equilibrium constants K _m for the aqueous speciation reactions were estimated. Two types of representations of the osmotic coefficients for the Li₂B₄O₇+LiCl+H₂O system are presented with ion-interaction models based on Pitzer’s equations with minor modifications: model (I) represents the φ _S data with six parameters based on considering the ion-interactions between three ionic species of Li⁺, Cl⁻, and B₄O₇²⁻, and model (II) for represents the φ _E data based on considering the equilibrium speciation. The parameters of models (I) and (II) are presented. The standard deviations for the two models are 0.0152 and 0.0298, respectively. Model (I) was more satisfactory than model (II) for representing the isopiestic data.     

Synthesis, Crystal Structure, and IR Spectroscopic Characterization of 1,6-Hexanediammonium Dihydrogendecavanadate

 Anhydrous 1,6-hexanediammonium dihydrogendecavanadate ((HdaH₂)₂H₂V₁₀O₂₈, 1) was prepared by reaction of V₂O₅ with 1,6-hexanediamine in aqueous solution. The crystal structure of 1 was determined, and the proton positions in the H₂V₁₀O₂₈ ⁴⁻ anion were calculated by the bond length/bond number method. The protons are bound to the centrosymmetrically oriented μ–OV₃ groups of the decavanadate anion. Based on the analysis of IR spectra of 1 prepared from H₂O and D₂O, the absorption band at 871 cm⁻¹ can be attributed to δ(V–O_b–H) vibrations.     

Effect of free valence on the characteristics of internal rotation in <Emphasis Type="Italic">n</Emphasis>-alkyl radicals

A study of internal rotation in the radicals n-C _n H_2n+1C^·H₂, (2 ≤ n ≤ 7) was carried out for the case of rotation around the bonds not including the radical center. 21 potential functions of internal rotation V(φ) were calculated. The coefficients in V(φ) were shown to depend only on the immediate environment at the bond of rotation. Characteristics of internal rotation in n-alkyl radicals were compared with related parameters of the corresponding alkane molecules. The generalized function V _av(φ) with the coefficients defined only by the position of the bond of rotation in the hydrocarbon chain and possessing the transposition property were proposed. The functions V _av(φ) were recommended for the simulation of the structure and properties of large molecules containing hydrocarbon fragments. This work continues a systematic study on the characteristics of the internal rotation in the n-alkane molecules and the groups containing free valence in n-alkyl radicals.     

D<Subscript>2</Subscript>O — H<Subscript>2</Subscript>O Solvent Isotope Effects on the Apparent Molar Volumes of Tetramethyl-<Emphasis Type="Italic">bis</Emphasis>-urea (Mebicarum) Solutions

Densities of solutions of tetramethyl-bis-urea (TMbU) or “Mebicarum” in H₂O and D₂O, with solute mole fraction concentrations (x ₂) ranging up to 3.2 × 10⁻³, have been measured at 288.15, 298.15, 308.15 and 318.15 K using a precision vibrating-tube densimeter. The limiting apparent molar volumes, V _φ,2 ^∞, and expansibilities, E _{p, φ, 2} ^∞, of the solute have been calculated. The isotope effect δ V _φ,2 ^∞(H₂O → D₂O;T) is negative, monotonously decreases in magnitude with temperature and reverses sign at T ≈ 318 K. Water (H₂O, D₂O) and TMbU molecules in infinitely- and highly-dilute aqueous solutions form H(D)-bonded hydration complexes with a high packing density. The hydration of TMbU should be treated as a superposition of two mechanisms, hydrophobic and hydrophilic, with the latter one predominating.     

Redetermination of rifampicin pentahydrate revealing a zwitterionic form of the antibiotic

Rifampicin belongs to the family of naphthalenic ansamycin antibiotics. The first crystal structure of rifampicin in the form of the pentahydrate was reported in 1975 [Gadret, Goursolle, Leger & Colleter (1975). Acta Cryst. B 31 , 1454–1462] with the rifampicin molecule assumed to be neutral. Redetermination of this crystal structure now shows that one of the phenol –OH groups is deprotonated, with the proton transferred to a piperazine N atom, confirming earlier spectroscopic results that indicated a zwitterionic form for the molecule, namely (2S,12Z,14E,16S,17S,18R,19R,20R,21S,22R,23S,24E)‐21‐acetyloxy‐6,9,17,19‐tetrahydroxy‐23‐methoxy‐2,4,12,16,18,20,22‐heptamethyl‐8‐[(E)‐N‐(4‐methylpiperazin‐4‐ium‐1‐yl)formimidoyl]‐1,11‐dioxo‐1,2‐dihydro‐2,7‐(epoxypentadeca[1,11,13]trienimino)naphtho[2,1‐b]furan‐5‐olate pentahydrate, C₄₃H₅₈N₄O₁₂·5H₂O. The molecular structure of this antibiotic is stabilized by a system of four intramolecular O—H...O and N—H...N hydrogen bonds. Four of the symmetry‐independent water molecules are arranged via hydrogen bonds into helical chains extending along [100], whereas the fifth water molecule forms only one hydrogen bond, to the amide group O atom. The rifampicin molecules interact via O—H...O hydrogen bonds, generating chains along [001]. Rifampicin pentahydrate is isostructural with recently reported rifampicin trihydrate methanol disolvate.     

Isopiestic Determination of the Osmotic Coefficients and Pitzer Model Representation for the Li<Subscript>2</Subscript>B<Subscript>4</Subscript>O<Subscript>7</Subscript>+LiCl + H<Subscript>2</Subscript>O System at <Emphasis Type="Italic">T</Emphasis>=298.15 K

Isopiestic molalities and water activities have been measured for the Li₂B₄O₇+LiCl + H₂O system at T=298.15 K using an improved isopiestic apparatus. Two types of osmotic coefficients, φ _S and φ _E, were determined, where φ _S is based on the stoichiometric molalities of the solute Li₂B₄O₇(aq) and φ _E is based on equilibrium molalities calculated by consideration of the equilibrium speciation of Li₂B₄O₇ to partially form H₃BO₃, B(OH)₄⁻ and B₃O₃(OH)₄⁻. The stoichiometric equilibrium constant K _m for the aqueous speciation reaction was estimated. Two representations of the osmotic coefficients of Li₂B₄O₇ + LiCl + H₂O were made with Pitzer’s ion-interaction model. Model (1) involved representing the φ _S values with six parameters based on considering the ionic interactions between Li⁺, Cl⁻, and B₄O₇²⁻; and model (2) involved representing the φ _E values based on the calculated equilibrium speciation. Reasonable agreements were obtained between the experimental osmotic coefficient data and those calculated using the above models, with standard deviations of 0.075 and 0.0229, respectively, for these two models. The thermodynamic osmotic coefficients for the complex system containing polymeric boron anions and lithium cation was modelled and explained by use of Pitzer’s ion-interaction model, with minor modifications in combination with speciation reaction equilibria.     

Four 7‐aryl‐substituted pyrido[2,3‐d]pyrimidine‐2,4(1H,3H)‐diones: similar molecular structures but different crystal structures

Molecules of 1,3‐dimethyl‐7‐(4‐methylphenyl)pyrido[2,3‐d]pyrimidine‐2,4(1H,3H)‐dione, C₁₆H₁₅N₃O₂, (I), are linked by paired C—H...O hydrogen bonds to form centrosymmetric R₂²(10) dimers, which are linked into chains by a single π–π stacking interaction. A single C—H...O hydrogen bond links the molecules of 7‐(biphenyl‐4‐yl)‐1,3‐dimethylpyrido[2,3‐d]pyrimidine‐2,4(1H,3H)‐dione, C₂₁H₁₇N₃O₂, (II), into C(10) chains, which are weakly linked into sheets by a π–π stacking interaction. In 7‐(4‐fluorophenyl)‐3‐methylpyrido[2,3‐d]pyrimidine‐2,4(1H,3H)‐dione, C₁₄H₁₀FN₃O₂, (III), an N—H...O hydrogen bond links the molecules into C(6) chains, which are linked into sheets by a π–π stacking interaction. The molecules of 7‐(4‐methoxyphenyl)‐3‐methylpyrido[2,3‐d]pyrimidine‐2,4(1H,3H)‐dione, C₁₅H₁₃N₃O₃, (IV), are also linked into C(6) chains by an N—H...O hydrogen bond, but here the chains are linked into sheets by a combination of two independent C—H...π(arene) hydrogen bonds.     

A Theoretical Study of Amine Bonding in Titanium Alkoxide Adducts

Summary. DFT calculations were carried out on Ti₂(OCH₃)₈ (NH₂CH₃)₂ and Ti₂(OCH₃)₈(NH₃)₂, which are model compounds for the previously isolated amine adducts Ti₂(OR)₈(NH₂ R′)₂. The calculations show that the Ti–N bond strength is weak; however, coordination of the amine to the metal center is supported by a N–H···O hydrogen bond of the amine with the neighboring alkoxo ligand. The Ti–N interaction is purely σ in nature, while the Ti–O interactions include both σ and π contributions. The lowest unoccupied molecular orbitals are mainly localized on Ti t_2g-like orbitals.     

Synthesis, Crystal Structure, and IR Spectroscopic Characterization of 1,6-Hexanediammonium Dihydrogendecavanadate

Summary.  Anhydrous 1,6-hexanediammonium dihydrogendecavanadate ((HdaH₂)₂H₂V₁₀O₂₈, 1) was prepared by reaction of V₂O₅ with 1,6-hexanediamine in aqueous solution. The crystal structure of 1 was determined, and the proton positions in the H₂V₁₀O₂₈ ⁴⁻ anion were calculated by the bond length/bond number method. The protons are bound to the centrosymmetrically oriented μ–OV₃ groups of the decavanadate anion. Based on the analysis of IR spectra of 1 prepared from H₂O and D₂O, the absorption band at 871 cm⁻¹ can be attributed to δ(V–O_b–H) vibrations. Received August 3, 2001. Accepted (revised) October 8, 2001     

Synthesis, vibrational spectra, and crystal and molecular structure of 1,5-bis[2-(dihydroxyphosphinyl)phenoxy]-3-oxapentane dihydrate [(HO)2(O)P(C6H4)(OCH2CH2)2O(C6H4)P(O)(OH)2(H2O)] · H2O

A modified method of synthesis of a phosphoryl podand, 1,5-bis[2-(dihydroxyphosphinyl)phenoxy]-3-oxapentane (L), has been developed. The IR spectra of this podand and its dehydrate (L [L · H₂O] · H₂O (I) have been studied, the structure of I has been determined by X-ray crystallography. The crystals are orthorhombic, a = 9.4006(19) ?, b = 25.494(5) ?, c = 8.4264(17) ?, V = 2019.5(7) ?³, Z = 4, space group Pna2₁, R = 0.0512 for 3016 reflections with I > 2σ(I). Compound I is a host-guest molecular complex. Phosphoryl podand L acts as a host molecule, and one of the water molecules (H₂O(11)) is a guest. This molecule forms one donor and one acceptor intramolecular hydrogen bond with hydroxyl groups of two phosphoryl groups (O(8)H(4) and O(3)H(2)) and combines them into an 18-membered macrocyclic ring, acting as a kind of “lock.” The H₂O(11) molecule forms a second donor intramolecular hydrogen bond with the O(5) ether atom. The neutral molecular complexes are linked by hydrogen bonds directly and through the second water molecule (H₂O(10)) into chains running along the c axis.     

Tetraaquabis[5‐(3‐pyridyl‐κN)pyrimidine]zinc(II) bis(trifluoromethanesulfonate): a novel cationic complex and three‐dimensional hydrogen‐bonded network

The title compound, [Zn(C₉H₇N₃)₂(H₂O)₄](CF₃O₃S)₂, contains an octahedral [ZnL₂(H₂O)₄]²⁺ cationic complex with trans geometry (Zn site symmetry ), and each 5‐(3‐pyridyl)pyrimidine (L) ligand is coordinated in a monodentate fashion through the pyridine N atom. In the extended structure, these complexes, with both hydrogen‐bond acceptor (pyrimidine) and donor (H₂O) functions, are linked to each other by intermolecular water–pyrimidine O—H...N hydrogen‐bonding interactions, resulting in a double chain along the crystallographic a axis. The trifluoromethanesulfonate anions are integrated into the chains via O—H...O hydrogen bonds between the coordinated water and sulfonate O atoms. These double chains are associated into a novel three‐dimensional network through interchain water–pyrimidine O—H...N hydrogen bonds. The asymmetric ligand plays an important role in constructing this unusual supramolecular structure.     

Two polymorphs and the diethylammonium salt of the barbiturate eldoral

Polymorph (Ia) of eldoral [5‐ethyl‐5‐(piperidin‐1‐yl)barbituric acid or 5‐ethyl‐5‐(piperidin‐1‐yl)‐1,3‐diazinane‐2,4,6‐trione], C₁₁H₁₇N₃O₃, displays a hydrogen‐bonded layer structure parallel to (100). The piperidine N atom and the barbiturate carbonyl group in the 2‐position are utilized in N—H...N and N—H...O=C hydrogen bonds, respectively. The structure of polymorph (Ib) contains pseudosymmetry elements. The two independent molecules of (Ib) are connected via N—H...O=C(4/6‐position) and N—H...N(piperidine) hydrogen bonds to give a chain structure in the [100] direction. The hydrogen‐bonded layers, parallel to (010), formed in the salt diethylammonium 5‐ethyl‐5‐(piperidin‐1‐yl)barbiturate [or diethylammonium 5‐ethyl‐2,4,6‐trioxo‐5‐(piperidin‐1‐yl)‐1,3‐diazinan‐1‐ide], C₄H₁₂N⁺·C₁₁H₁₆N₃O₃⁻, (II), closely resemble the corresponding hydrogen‐bonded structure in polymorph (Ia). Like many other 5,5‐disubstituted derivatives of barbituric acid, polymorphs (Ia) and (Ib) contain the R₂²(8) N—H...O=C hydrogen‐bond motif. However, the overall hydrogen‐bonded chain and layer structures of (Ia) and (Ib) are unique because of the involvement of the hydrogen‐bond acceptor function in the piperidine group.     

Synthesis,structure and bonding of 2-aminopyridinium heptamolybdate trihydrate

Summary 2-aminopyridinium heptamolybdate trihydrate crystallizes in the monoclinic system with space group P2₁/n and Z=4 (R=0.030). The unit cell dimensions area=14.8161(4) Å,b=17.5073(4) Å,c=20.8492(6) Å, =107.503(2)°, V=5157.7(2) ų. The [Mo₇O₂₄]^6– anions in the 2-aminopyridinium, ammonium⁽⁴⁾, guanidium⁽²⁾, propyl- and isopropyl-ammonium⁽¹⁾ molybdates, while similar, show slightly differences in several bond lengths and angles. The distinguishing features of 2-aminopyridinium heptamolybdate trihydrate structure is its extensive hydrogen bonding. The planar cations and the water molecules are positioned so as to be able to form hydrogen bonds with either molybdate oxygen atoms or water oxygen atoms. Four different types of hydrogen bonds have been found-: N-H... O (mono- and bifurcated), N-H... Ow (monofurcated), Ow-Hw... O (mono- and bi-furcated) and Ow-Hw...OW (monofurcated). The closest approach distances associated with 27 of these potential hydrogen bonds vary from 2.67 to 3.24 Å^(7,8)). The proposed strong hydrogen bonding interactions appear to stabilize the structure and explain the way of three water molecules are lost upon heating. Some of these hydrogen bonds can play an important role in the possible photochromism of this compound.     

Concomitant polymorphism and conformational isomerism in 4‐acetylresorcinol

Two polymorphs of the title compound [systematic name: 1‐(2,4‐dihydroxyphenyl)ethanone], C₈H₈O₃, were investigated. The known structure [designated (I‐M); P2₁/c, Z = 4; previously investigated at room temperature by Robert, Moore, Eichhorn & Rillema (2007). Acta Cryst. E 63 , o4252] was redetermined at low temperature, and a new form [(I‐O); P2₁2₁2₁, Z = 12] was discovered in the same sample. In both forms, the molecules are planar (apart from the methyl H atoms) and they contain intramolecular O—H...O=C hydrogen bonds. In polymorph (I‐M), molecules are linked into chains by a single intermolecular O—H...O hydrogen bond, and the chains are linked into sheets by two C—H...O hydrogen bonds. Three O—H...O hydrogen bonds link the molecules of polymorph (I‐O) into chains and neighbouring chains are connected by one C—H...O interaction to form an offset layer structure. Two weak methyl C—H...O interactions link the layers.     

Critical Behavior of {Water + AOT + Decane} Microemulsion with Small Molar Ratio of Water to AOT

The coexistence curves of (T,n), (T,φ) and (T,ψ) (n,φ,ψ are the refractive index, the volume fraction, and the effective volume fraction, respectively) for a ternary microemulsion system of {water + sodium di(2-ethylhexyl) sulfosuccinate (AOT) + n-decane} with the molar ratio 25.1 of water to AOT have been determined at constant pressure within about 7 K from the critical temperature T _c by measurements of refractive index. The critical exponent β has been deduced from the (T,n), (T,φ) and (T,ψ) coexistence curves within 1 K above T _c . They were 0.323, 0.327, and 0.329, respectively, and were consistent with the 3D-Ising value. Furthermore, the experimental results have been analyzed to obtain critical amplitudes B and the Wegner-correction terms B ₁, to examine the diameters of the coexistence curves and to discuss the goodness of density variables for constructing order parameters.     

Dibenzylammonium hydrogen maleate and a redetermination at 120 K of bis(dibenzylamino)methane

In dibenzylammonium hydrogen maleate [or dibenzylammonium (2Z)‐3‐carboxyprop‐2‐enoate], C₁₄H₁₆N⁺·C₄H₃O₄⁻, (I), the anion contains a fairly short and nearly linear O—H...O hydrogen bond, with an O...·O distance of 2.4603 (16) Å, but with the H atom clearly offset from the mid‐point of the O...O vector. The counter‐ions in (I) are linked by two N—H...O hydrogen bonds to form C₂²(6) chains and these chains are weakly linked into sheets by a C—H...O hydrogen bond. Bis(dibenzylamino)methane, C₂₉H₃₀N₂, (II), crystallizes with two independent molecules lying across twofold rotation axes in the space group C2/c, and the molecules are conformationally chiral; there are no direction‐specific intermolecular interactions in the crystal structure of (II).