Biotransformation,spectroscopic investigation,crystal structure and electrostatic properties of 3,7α‐dihydroxyestra‐1,3,5(10)‐trien‐17‐one monohydrate studied using transferred electron‐density parameters

The biologically transformed product of estradiol valerate, namely 3,7α‐dihydroxyestra‐1,3,5(10)‐trien‐17‐one monohydrate, C₁₈H₂₂O₃·H₂O, has been investigated using UV–Vis, IR, ¹H and ¹³C NMR spectroscopic techniques, as well as by mass spectrometric analysis. Its crystal structure was determined using single‐crystal X‐ray diffraction based on data collected at 100 K. The structure was refined using the independent atom model (IAM) and the transferred electron‐density parameters from the ELMAM2 database. The structure is stabilized by a network of hydrogen bonds and van der Waals interactions. The topology of the hydrogen bonds has been analyzed by the Bader theory of `Atoms in Molecules' framework. The molecular electrostatic potential for the transferred multipolar atom model reveals an asymmetric character of the charge distribution across the molecule due to a substantial charge delocalization within the molecule. The molecular dipole moment was also calculated, which shows that the molecule has a strongly polar character.     

Electrostatic properties of the pyrimethamine–2,4‐dihydroxybenzoic acid cocrystal in methanol studied using transferred electron‐density parameters

The crystal structure of the cocrystal salt form of the antimalarial drug pyrimethamine with 2,4‐dihydroxybenzoic acid in methanol [systematic name: 2,4‐diamino‐5‐(4‐chlorophenyl)‐6‐ethylpyrimidin‐1‐ium 2,4‐dihydroxybenzoate methanol monosolvate, C₁₂H₁₄ClN₄⁺·C₇H₅O₄⁻·CH₃OH] has been studied using X‐ray diffraction data collected at room temperature. The crystal structure was refined using the classical Independent Atom Model (IAM) and the Multipolar Atom Model by transferring electron‐density parameters from the ELMAM2 database. The Cl atom was refined anharmonically. The results of both refinement methods have been compared. The intermolecular interactions have been characterized on the basis of Hirshfeld surface analysis and topological analysis using Bader's theory of Atoms in Molecules. The results show that the molecular assembly is built primarily on the basis of charge transfer between 2,4‐dihydroxybenzoic acid and pyrimethamine, which results in strong intermolecular hydrogen bonds. This fact is further validated by the calculation of the electrostatic potential based on transferred electron‐density parameters.     

Crystal structure and electrostatic properties of prednisolone acetate studied using a transferred multipolar atom model

Prednisolone acetate {systematic name: 2‐[(8S ,9S ,10R ,13S ,14S ,17R )‐11,17‐dihydroxy‐10,13‐dimethyl‐3‐oxo‐6,7,8,9,10,11,12,13,14,15,16,17‐dodecahydro‐3H‐cyclopenta[a ]phenanthren‐17‐yl]‐2‐oxoethyl acetate}, is an ophthalmic drug that belongs to the class of corticosteroids. Its crystal structure was refined using the classical independent atom model (IAM) and a transferred multipolar atom model using the ELMAM2 database. The results of both refinements have been compared. The ELMAM2 refinement was found to be superior in terms of the refinement statistics. It has been shown that certain electron‐density‐derived properties can be calculated on the basis of the transferred parameters for crystals which diffract to ordinary resolution. The procedure proves helpful in understanding the mode of action of the drug molecule.     

4‐Benzoyl‐3,4‐dihydro‐2H‐1,4‐benzoxazine‐2‐carbonitrile: refinement using a multipolar atom model

The structural model for the title compound, C₁₆H₁₂N₂O₂, was refined using a multipolar atom model transferred from an experimental electron‐density database. The refinement showed some improvements of crystallographic statistical indices when compared with a conventional spherical neutral‐atom refinement. The title compound adopts a half‐chair conformation. The amide N atom lies almost in the plane defined by the three neighbouring C atoms. In the crystal structure, molecules are linked by weak intermolecular C—H...O and C—H...π hydrogen bonds.     

The experimental library multipolar atom model refinement of l‐aspartic acid

The crystal structure of l ‐aspartic acid, C₄H₇NO₄, has been determined using two types of refinement, viz. the standard independent atom model (IAM) and the experimental library multipolar atom model (ELMAM). The ELMAM refinement shows a good improvement of the statistical indices compared with the IAM model, notably in terms of thermal displacement parameters and bond distances involving H atoms.     

2,2′‐(Ethane‐1,2‐diyl)bis[2‐(5‐bromothiophen‐2‐yl)‐1,3‐dioxolane] at 100 K refined using a multipolar atom model

The title compound, C₁₆H₁₆Br₂O₄S₂, which is a precursor for the synthesis of oligothiophenes and their substituted homologues, was synthesized and its X‐ray crystal structure determined at 100 K. The experimental electron‐density parameters for the available atom types were transferred from the ELMAM2 database. The compound lies about an inversion centre, which coincides with the mid‐point of a C—C bond. The molecules in the crystal are linked by several types of weak interactions; the largest contact surfaces are for H...H and H...Br.     

17β‐Ethoxy‐3‐methoxy‐8‐isoestra‐1,3,5(10)‐triene

The conformation of the crystal of 17β‐ethoxy‐3‐methoxy‐8‐iso­estra‐1,3,5(10)‐triene, C₂₁H₃₀O₂, (I), has been established and compared with the molecular structure of a typical steroid estrogen 8‐iso‐analogue, (II). Calculations of distances separating some of the H‐atom pairs in (I) and (II) by molecular‐mechanical and semi‐empirical methods revealed the similarity of the values to the H⃛H distances obtained from X‐ray analysis.     

16α,17α‐Epoxy‐20‐oxopregn‐5‐en‐3β‐yl acetate

The title compound, C₂₃H₃₂O₄, has a 3β configuration, with the epoxy O atom at 16α,17α. Rings A and C have slightly distorted chair conformations. Because of the presence of the C5=C6 double bond, ring B assumes an 8β,9α‐half‐chair conformation slightly distorted towards an 8β‐sofa. Ring D has a conformation close to a 14α‐envelope. The acetoxy and acetyl substituents are twisted with respect to the average molecular plane of the steroid. The conformation of the mol­ecule is compared with that given by a quantum chemistry calculation using the RHF–AM1 (RHF = Roothaan Hartree–Fock) Hamiltonian model. Cohesion of the crystal can be attributed to van der Waals interactions and weak intermolecular C—H?O interactions, which link the mol­ecules head‐to‐tail along [101].     

Polymorphism of 3‐(5‐phenyl‐1,3,4‐oxadiazol‐2‐yl)‐ and 3‐[5‐(pyridin‐4‐yl)‐1,3,4‐oxadiazol‐2‐yl]‐2H‐chromen‐2‐ones

This study of 3‐(5‐phenyl‐1,3,4‐oxadiazol‐2‐yl)‐2H‐chromen‐2‐one, C₁₇H₁₀N₂O₃, 1 , and 3‐[5‐(pyridin‐4‐yl)‐1,3,4‐oxadiazol‐2‐yl]‐2H‐chromen‐2‐one, C₁₆H₉N₃O₃, 2 , was performed on the assumption of the potential anticancer activity of the compounds. Three polymorphic structures for 1 and two polymorphic structures for 2 have been studied thoroughly. The strongest intermolecular interaction is stacking of the `head‐to‐head' type in all the studied crystals. The polymorphic structures of 1 differ with respect to the intermolecular interactions between stacked columns. Two of the polymorphs have a columnar or double columnar type of crystal organization, while the third polymorphic structure can be classified as columnar‐layered. The difference between the two structures of 2 is less pronounced. Both crystals can be considered as having very similar arrangements of neighbouring columns. The formation of polymorphic modifications is caused by a subtle balance of very weak intermolecular interactions and packing differences can be identified only using an analysis based on a study of the pairwise interaction energies.     

5‐(3,4‐Dimethoxybenzyl)‐7‐isopropyl‐1,3,5‐triazepane‐2,6‐dione acetonitrile solvate refined using a multipolar atom model

The crystal structure of the title compound, C₁₆H₂₃N₃O₄·CH₃CN, was refined using a multipolar atom model transferred from an experimental electron‐density database. The refinement showed some improvement in crystallographic statistical indices compared with the independent atom model. The triazepane ring adopts a twist‐boat conformation. In the crystal structure, the molecule forms intermolecular contacts with 14 different neighbours. There are two N—H...O and one C—H...O intermolecular hydrogen bond.     

A moderate distortion of the `picket‐fence' porphyrin (cryptand‐222)potassium chlorido[meso‐α,α,α,α‐tetrakis(o‐pivalamidophenyl)porphyrinato]ferrate(II) n‐hexane monosolvate

As representative porphyrin model compounds, the structures of `picket‐fence' porphyrins have been studied intensively. The title solvated complex salt {systematic name: (4,7,13,16,21,24‐hexaoxa‐1,10‐diazabicyclo[8.8.8]hexacosane)potassium(I) [5,10,15,20‐tetrakis(2‐tert‐butanamidophenyl)porphyrinato]iron(II) n‐hexane monosolvate}, [K(C₁₈H₃₆N₂O₆)][Fe(C₆₄H₆₄N₈O₄)Cl]·C₆H₁₄ or [K(222)][Fe(TpivPP)Cl]·C₆H₁₄ [222 is cryptand‐222 or 4,7,13,16,21,24‐hexaoxa‐1,10‐diazabicyclo[8.8.8]hexacosane, and TpivPP is meso‐α,α,α,α‐tetrakis(o‐pivalamidophenyl)porphyrinate(2−)], [K(222)][Fe(TpivPP)Cl]·C₆H₁₄, is a five‐coordinate high‐spin iron(II) picket‐fence porphyrin complex. It crystallizes with a potassium cation chelated inside a cryptand‐222 molecule; the average K—O and K—N distances are 2.81 (2) and 3.05 (2) Å, respectively. One of the protecting tert‐butyl pickets is disordered. The porphyrin plane presents a moderately ruffled distortion, as suggested by the atomic displacements. The axial chloride ligand is located inside the molecular cavity on the hindered porphyrin side and the Fe—Cl bond is tilted slightly off the normal to the porphyrin plane by 4.1°. The out‐of‐plane displacement of the metal centre relative to the 24‐atom mean plane (Δ₂₄) is 0.62 Å, indicating a noticeable doming of the porphyrin core.     

Reactions of α,β‐Unsaturated Thioamides with Diazo Compounds

Several reactions of the α,β‐unsaturated thioamide 8 with diazo compounds 1a – 1d were investigated. The reactions with CH₂N₂ ( 1a ), diazocyclohexane ( 1b ), and phenyldiazomethane ( 1c ) proceeded via a 1,3‐dipolar cycloaddition of the diazo dipole at the C?C bond to give the corresponding 4,5‐dihydro‐1H‐pyrazole‐3‐carbothioamides 12a – 12c , i.e., the regioisomer which arose from the bond formation between the N‐terminus of the diazo compound and the C(α)‐atom of 8 . In the reaction of 1a with 8 , the initially formed cycloadduct, the 4,5‐dihydro‐3H‐pyrazole‐3‐carbothioamide 11a , was obtained after a short reaction time. In the case of 1c , two tautomers 12c and 12c ′ were formed, which, by derivatization with 2‐chlorobenzoyl chloride 14 , led to the crystalline products 15 and 15 ′. Their structures were established by X‐ray crystallography. From the reaction of 8 and ethyl diazoacetate ( 1d ), the opposite regioisomer 13 was formed. The monosubstituted thioamide 16 reacted with 1a to give the unstable 4,5‐dihydro‐1H‐pyrazole‐3‐carbothioamide 17 .     

Dichloro{N‐[3‐(η5‐cyclopentadienyl)propyl]‐4‐toluenesulfonamido‐κ2N,O}titanium(IV)

The title compound, [Ti(C₁₅H₁₇NO₂S)Cl₂], has a Ti atom bound to the N and O atoms of a p‐toluene­sulfon­amide ligand, which is tethered by a three‐carbon chain to a η⁵‐cyclo­penta­dienyl group. The distorted square‐pyramidal geometry is completed by two Cl atoms. The Ti—N bond length of 2.0375 (13) Å is longer than that in related compounds, the N atom having asymmetric trigonal–planar geometry. Conformational strain relief is noted when compared with ethyl‐tethered compounds.     

Density functional study of H2 molecule and H atom adsorption on α‐U(001) surface

Density functional theory method has been employed to investigate the adsorption of H₂ molecule and H atom on α‐U(001) surface. There exist four initial sites [top (A), triangle‐center (B), long‐bridge (C), and short‐bridge (D)] for H₂ and H atom adsorptions on α‐U(001) surface. The E_ads (adsorption energy) values on the top sites of H₂‐U(001) configurations are around ?0.666 eV, and H₂ molecule has been elongated but not broken into H atoms. For the other three sites, the E_ads values are around ?1.521 eV. The long‐bridge site is the most reactive site for H₂ decomposing. For the H‐U(001) configurations, the E_ads are around ?2.904 eV. Top site and short‐bridge site are the most reactive sites for the H atom react on the α‐U(001) surface. Our work reveals that the different reactive sites play discrepant effects on hydrogenation process. Geometric deformations, diffusion paths, and partial density of states of H₂‐U(001) and H‐U(001) configurations have also been analyzed. Copyright © 2016 John Wiley & Sons, Ltd.     

5-雄烯-3β, 7α, 17β-三醇和5-雄烯-3β, 7β, 17β-三醇的合成

以5-雄烯二醇为原料,用微生物转化的方法合成了两个重要的神经甾体5-雄烯-3β, 7α, 17β-三醇和5-雄烯-3β, 7β, 17β-三醇。所用菌种总枝毛霉为我们自己筛选,并首次应用于5-雄烯-3β, 7α, 17β-三醇和5-雄烯-3β, 7β, 17β-三醇的合成中。     

21α‐Fluoro‐7‐norvouacapane‐17β,21α‐lactone

The crystal structure of 21α‐fluoro‐7‐norvouacapane‐17β,21α‐lactone, C₂₀H₂₅FO₃, a new synthetic derivative of the diterpenoid 6α,7β‐di­hydroxy­vouacapan‐17β‐oic acid isolated from Pterodon polygalaeflorus Benth fruits, is described.     

Synthesis and Crystal Structures of the Molybdenum(II) Complexes with the N,N‐dimethylthiocarbamoyl Containing Ligand: Crystal Structures of [Mo(CO)2(η2‐S2COEt)(η2‐SCNMe2)(PPh3)] and [Mo(CO)2(η2‐S2CNC4H8)(η2‐SCNMe2)(PPh3)]

The reaction of the thiocarbamoyl‐molybdenum complex [Mo(CO)₂(η²‐SCNMe₂)(PPh₃)₂Cl] 1 , with EtOCS2K and C4H8NCS2NH4 in dichloromethane at room temperature yielded the seven coordinated ethyldithiocarbonate thiocarbamoyl‐molybdenum complex [Mo(CO)₂(η²‐S₂COEt)(η²‐SCNMe₂)(PPh₃)] 2 , and the dithiocarbamate thiocarbamoyl‐molybdenum complex [Mo(CO)₂(η²‐S₂CNC₄H₈)(η²‐SCNMe₂)(PPh₃)] 3 . The geometry around the metal atom of compounds 2 and 3 are capped octahedrons as revealed by X‐ray diffraction analyses. The thiocarbamoyl and ethyldithiocarbonate or pyrrolidinyldithiocarbamate ligands coordinate to the molybdenum metal center through the carbon and sulfur and two sulfur atoms, respectively. Structure parameters, NMR, IR and Mass spectra are in agreement with the crystal chemistry of the two compounds.     

Two azo pigments based on β‐naphthol

There has been much discussion in the literature of the azo–hydrazone tautomerism of pigments. All commercial azo pigments with β‐naphthol as the coupling compound adopt the hydrazone tautomeric form (Ph—NH—N=C) in the solid state. In contrast, the red pigments 1‐[4‐(dimethylamino)phenyldiazenyl]‐2‐naphthol, C₁₈H₁₇N₃O, (1a), and 1‐[4‐(diethylamino)phenyldiazenyl]‐2‐naphthol, C₂₀H₂₁N₃O, (1b), have been reported to be azo tautomers or a mixture of azo and hydrazone tautomers in the solid state. To prove these observations, both compounds were synthesized, recrystallized and their crystal structures redetermined by single‐crystal structure analysis. Difference electron‐density maps show that the H atoms of the hydroxyl groups are indeed bonded to the O atoms. Nevertheless, a small amount of the hydrazone form seems to be present. Hence, the compounds are close to being `real' azo compounds. Compound (1a) crystallizes with a herring‐bone structure and compound (1b) forms a rare double herring‐bone structure.     

1H‐Indazole and 2H‐indazole derivatives of androsta‐5,16‐dien‐3β‐ol

The title compounds, 17‐(1H‐indazol‐1‐yl)androsta‐5,16‐dien‐3β‐ol, (I), and 17‐(2H‐indazol‐2‐yl)androsta‐5,16‐dien‐3β‐ol, (II), both C₂₆H₃₂N₂O, have an indazole substituent at the C17 position. The six‐membered B ring of each compound assumes a half‐chair conformation. A twist of the steroid skeleton is observed and reproduced in quantum‐mechanical ab initio calculations of the isolated molecule using a molecular orbital Hartree–Fock method. In the 1H‐indazole derivative, (I), the molecules are joined in a head‐to‐head fashion via O—H...O hydrogen bonds, forming chains along the a axis. In the 2H‐indazole derivative, (II), the molecules are joined in a head‐to‐tail fashion with one of the N atoms of the indazole ring system acting as the acceptor. The hydrogen‐bond pattern consists of zigzag chains running along the b axis. Substituted steroids have proven to be effective in inhibiting androgen biosynthesis through coordination of the Fe atoms of some enzymes, and this study shows that indazole‐substituted steroids adopt twisted conformations that restrict their intermolecular interactions.