Anomeric effects in the symmetrical and asymmetrical structures of triethylamine. Blue-shifts of the C-h stretching vibrations in complexed and protonated triethylamine

Quantum mechanical calculations using density functional theory with the hybrid B3LYP functional and the 6-31++G(d,p) basis set are performed on isolated triethylamine (TEA), its hydrogen-bond complex with phenol, and protonated TEA. The calculations include the optimized geometries and the results of a natural bond orbital (NBO) analysis (occupation of sigma* orbitals, hyperconjugative energies, and atomic charges). The harmonic frequencies of the C-H stretching vibrations of TEA are predicted at the same level of theory. Two stable structures are found for isolated TEA. In the most stable symmetrical structure (TEA-S), the three C-C bond lengths are equal and one of the C-H bond of each of the three CH2 groups is more elongated than the three other ones. In the asymmetrical structure (TEA-AS), one of the C-C bonds and two C-H bonds of two different CH2 groups are more elongated than the other ones. These structures result from the hyperconjugation of the N lone pair to the considered sigma*(C-H) orbitals (TEA-S) or to the sigma*(C-C) and sigma*(C-H) orbitals of the CH2 groups (TEA-AS). The formation of a OH...N hydrogen bond with phenol results in a decrease of the hyperconjugation, a contraction of the C-H bonds, and blue-shifts of 28-33 cm-1 (TEA-S) or 40-48 cm-1 (TEA-AS) of the nus(CH2) vibrations. The nu(CH3) vibrations are found to shift to a lesser extent. Cancellation of the lone pair reorganization in protonated TEA-S and TEA-AS results in large blue-shifts of the nu(CH2) vibrations, between 170 and 190 cm-1. Most importantly, in contrast with the blue-shifting hydrogen bonds involving C-H groups, the blue-shifts occurring at C-H groups not participating in hydrogen bond formation is mainly due to a reduction of the hyperconjugation and the resulting decrease in the occupation of the corresponding sigma*(C-H) orbitals. A linear correlation is established between the C-H distances and the occupation of the corresponding sigma*(C-H) orbitals in the CH2 groups.     

An orbital phase theory for the torquoselectivity of the ring-opening reactions of 3-substituted cyclobutenes: geminal bond participation

We apply an orbital phase theory to the torquoselectivity of the electrocyclic reactions of 3-substituted (X) cyclobutenes. The torquoselectivity is shown to be controlled by the orbital-phase relation of the reacting pi(CC) and sigma(CC) bonds with the sigma(CX) bond geminal to the sigma(CC) bond to be cleaved. The inward rotation of electron-donating sigma(CX) bonds and outward rotation of electron-withdrawing sigma(CX) bonds have been deduced from the orbital-phase theory. Enhancement of the inward rotation by the electron-donating capability of the sigma(CX) bonds is confirmed by the correlation between the torquoselectivity and sigma(CX) orbital energy. The orbital overlaps between the geminal sigma(CX) (sigma(CH)) and sigma(CC) bonds are found to be important as well. Unsaturated substituents with low-lying unoccupied pi orbitals also promote the inward rotation.     

On a definition of bond energies based on localized molecular orbitals

A theoretical model is presented for defining bond energies based on localized molecular Orbitals. These bond energies are obtained by rearranging the total SCF energy including the nuclear repulsion term to a sum over orbital and orbital interaction terms and then to total orbital terms, which can be interpreted as the energies of localized orbitals in a molecule. A scaling procedure is used to obtain a direct connection with experimental bond dissociation energies. Two scale parameters are employed, the C-C and the C-H bond dissociation energy in C₂H₆ for A-B and C-H type bonds, respectively. The implications of this scaling procedure are discussed. Numerical applications to a number of organic molecules containing no conjugated bonds gives in general a very satisfactory agreement between experimental and theoretical bond energies.     

Blue shifts of the C-H stretching vibrations in hydrogen-bonded and protonated trimethylamine. Effect of hyperconjugation on bond properties

The optimized geometry of isolated trimethylamine (TMA), its hydrogen bond complexes with phenol derivatives and protonated TMA is calculated at the B3LYP/6-31++G(d,p) level. A natural bond orbital (NBO) analysis on these systems is carried out at the same level of theory. In isolated TMA, one of the C-H bond in each of the three CH(3) groups is more elongated than the two other ones. As revealed by the NBO data, this results from a hyperconjugative interaction from the N lone pair to the sigma*(C-H) orbitals of the C-H bonds being in a transoid position with respect to the N lone pair. The formation of an intermolecular OH...N hydrogen bond with phenols results in a decrease of the lone pair effect. A linear correlation is found between the decrease in occupation of the sigma*(C-H) orbitals and the decrease in the hyperconjugative interaction energy in the complexes and isolated TMA. Complex formation with phenols results in a blue shift of 55-74 cm(-1) of the C-H stretching vibrations involved in the lone pair effect. Smaller blue shifts between 14 and 23 cm(-1) are predicted for the other C-H bonds. In these complexes, a linear correlation is found between the frequency shifts and the elongation of the C-H bonds. Protonation of TMA results in a nearly equalization of all the C-H distances and a blue shift of 180 cm(-1) of the C-H bonds involved in hyperconjugation with the N lone pair.     

Characterizing the properties of the N7,N9-dimethylguaninium chloride ion pairs: prospecting for the design of a novel ionic liquid

The structures, infrared spectra, and electronic properties of the N7,N9-dimethylguaninium chloride have been studied. The interaction of one cation with one to four Cl anions and one Cl anion with two cations were investigated. Fifteen stable conformers are obtained. It is found that there are four acidic regions in the vicinity of the guaninium cations. In these regions, the cation could H-bond with one to three Cl anions but no more than three nearest anions. One Cl anion could H-bond with two cations. Additionally, evidence of a Cl...pi interaction between the anion and cation is observed. Among these structures, one cation interaction with two anions and two cations interaction with one anion have the larger interaction energies than the other series. Natural bond orbital analyses and molecular orbitals reveal that the charge transfer from anion(s) to the cation(s) occurs mainly through either the Cllp --> sigma C-H, Cllp --> sigma N-H, or Cllp --> pi C8-N7 interactions. The interaction between Cl and sigma (C/N-H) or pi C-N produces a small bond order. This indicates that the Cl...H (Cl...pi) interaction exhibits a weak covalent character and suggests a strong ionic H-bond (Cl...pi bond). What's more, formation of Cl...H/Cl...pi bond decreases the bond order of the associated C/N-H bond or C8-N7 bond. In addition, examination of vibrational spectrum of each conformer explains the origin of H-bonding character.     

The role of excited Rydberg States in electron transfer dissociation

Ab initio electronic structure methods are used to estimate the cross sections for electron transfer from donor anions having electron binding energies ranging from 0.001 to 0.6 eV to each of three sites in a model disulfide-linked molecular cation. The three sites are (1) the S-S sigma(*) orbital to which electron attachment is rendered exothermic by Coulomb stabilization from the nearby positive site, (2) the ground Rydberg orbital of the -NH(3)(+) site, and (3) excited Rydberg orbitals of the same -NH(3)(+) site. It is found that attachment to the ground Rydberg orbital has a somewhat higher cross section than attachment to either the sigma orbital or the excited Rydberg orbital. However, it is through attachment either to the sigma(*) orbital or to certain excited Rydberg orbitals that cleavage of the S-S bond is most likely to occur. Attachment to the sigma(*) orbital causes prompt cleavage because the sigma energy surface is repulsive (except at very long range). Attachment to the ground or excited Rydberg state causes the S-S bond to rupture only once a through-bond electron transfer from the Rydberg orbital to the S-S sigma(*) orbital takes place. For the ground Rydberg state, this transfer requires surmounting an approximately 0.4 eV barrier that renders the S-S bond cleavage rate slow. However, for the excited Rydberg state, the intramolecular electron transfer has a much smaller barrier and is prompt.     

碳原子价轨道电负性对化学键性能的影响

研究了同一类型化学键X―C的键能、键长和H―C键的酸性等性能与碳原子价轨道电负性的定量关系。结果表明,X―C键能随碳原子价轨道电负性增加而线性增大;H―C与C―C键的键长随碳原子价轨道电负性增加而线性减小;H―C的酸性随碳原子价轨道电负性增加而线性增大。因而,对结构类似的有机化合物,可以采用碳原子价轨道电负性对实验测定的化学键性能作图,判断其测定结果正确与否。     

Stereoelectronic interactions in cyclohexane, 1,3-dioxane, 1, 3-oxathiane, and 1,3-dithiane: W-effect, sigma(C)(-)(X) <--> sigma(C)(-)(H) interactions, anomeric effect-what is really important?

Stereoelectronic effects proposed for C-H bonds in cyclohexane, 1, 3-dioxane, 1,3-oxathiane, and 1,3-dithiane were studied computationally. The balance of three effects, namely, sigma(C)(-)(X) --> sigma(C)(-)(H)()eq, sigma(C)(-)(H)()eq --> sigma(C)(-)(X), and n(p)(X) --> sigma(C)(-)(H)()eq interactions, was necessary to explain the relative elongation of equatorial C(5)-H bonds. The role of homoanomeric n(p) --> sigma(C(5))(-)(H)()eq interaction is especially important in dioxane. In dithiane, distortion of the ring by long C-S bonds dramatically increases overlap of sigma(C(5))(-)(H)()eq and sigma(C)(-)(S) orbitals and energy of the corresponding hyperconjugative interaction. Anomeric n(p)(X) --> sigma(C)(-)(H)()ax interactions with participation of axial C-H bonds dominate at C(2), C(4), and C(6). The balance of hyperconjugative interactions involving C-H(ax) and C-H(eq) bonds agrees well with the relative bond lengths for all C-H(ax)/C-H(eq) pairs in all studied compounds. At the same time, the order of one-bond spin-spin coupling constants does not correlate with the balance of stereoelectronic effects in dithiane and oxathiane displaying genuine reverse Perlin effect.     

1JCH correlates with alcohol hydrogen bond strength

The strength of the H-bond donation by alcohols is reflected in the carbon-hydrogen bond of the H-C-O-H functional group. The one-bond 13C-1H spin-spin coupling constant of hexafluoroisopropanol (HFIP) correlates with the strength of the H-bond in various HFIP-amine complexes with a slope of approximately -0.2 Hz in 1JCH per approximately 1 kJ mol(-1) increase in the H-bond enthalpy. The decrease in 1JCH is attributed to an increased overlap of the H-bonding sigma orbital with the antibonding sigma orbitals of the vicinal C-H bonds.     

A theoretical investigation of the interaction between substituted carbonyl derivatives and water: Open or cyclic complexes?

The structures and binding energies of complexes between substituted carbonyl bases and water are the B3LYP/6‐311++G(d,p) computational level. The calculations also include the proton affinity (PA) of the O of the C?O group, the deprotonation enthalpies (DPE) of the CH bonds along a natural bond orbital analysis. The calculations reveal that stable open C?O···H_wO_w as well as cyclic CH···O_wH_w···O?C complexes are formed. The binding energies for the open complexes are linearly related to the PAs, whereas the binding energies for the cyclic complexes depend on both the PA and DPE. Different indicators of hydrogen bonds strength such as electron charge density, intramolecular and intermolecular hyperconjugation energy, occupation of orbitals, and charge transfer show significant differences between open and cyclic complexes. The contraction of the CH bond of the formyl group and the corresponding blue shift of the ν(CH) vibration are explained by the classical trans lone pair effect. In contrast, the elongation or contraction of the CH₃ group involved in the interaction with water results from the variation of the orbital interaction energies from the σ(CH) bonding orbital to the σ* and π* antibonding orbitals of the C?O group. The resulting blue or red shifts of the ν(CH₃) vibrations are calculated in the partially deuterated isotopomers. © 2012 Wiley Periodicals, Inc.     

Oxidative properties of FeO2+: electronic structure and solvation effects

An electronic structure analysis is provided of the action of solvated FeO(2+), [FeO(H(2)O)(5)](2+), as a hydroxylation catalyst. It is emphasized that the oxo end of FeO(2+) does not form hydrogen bonds (as electron donor and H-bond acceptor) with H-bond donors nor with aliphatic C-H bonds, but it activates C-H bonds as an electron acceptor. It is extremely electrophilic, to the extent that it can activate even such poor electron donors as aliphatic C-H bonds, the C-H bond orbital acting as electron donor in a charge transfer type of interaction. Lower lying O-H bonding orbitals are less easily activated. The primary electron accepting orbital in a water environment is the 3sigma*alpha orbital, an antibonding combination of Fe-3d(z(2)) and O-2p(z), which is very low-lying relative to the pi*alpha compared with, for example, the sigma* orbital in O(2) relative to its pi*. This is ascribed to relatively small Fe-3d(z(2)) with O-2p(z) overlap, due to the nodal structure of the 3d(z(2)).The H-abstraction barrier is very low in the gas phase, but it is considerably enhanced in water solvent. This is shown to be due to strong screening effects of the dielectric medium, leading to relative destabilization of the levels of the charged [FeO(H(2)O)(5)](2+) species compared to those of the neutral substrate molecules, making it a less effective electron acceptor. The solvent directly affects the orbital interactions responsible for the catalytic reaction.     

第一过渡系金属硅烯配合物的理论研究

以HF/6-311+G^*基组研究了硅烯SiH₂同第一过渡系金属的配合物MSiH₂的分子轨道特征及键解离能.MSiH₂为共平面构型.其中基态的3TiSiH₂和4CoSiH₂带有明显的双键特征.M-Si键具有共价性质.M-Si的键解离能,从Sc到Cu呈现周期性变化,这种变化趋势同M的金属离子激发能之间存在近似的线性关系.     

Relation between electron scattering resonances of isolated NTCDA molecules and maxima in the density of unoccupied states of condensed NTCDA layers

The empty-level structure of the 1,4,5,8-naphthalenetetracarboxylic dianhydride (NTCDA) molecule is characterized by means of dissociative electron attachment (DEA) experiments in the gas phase coupled with DFT calculations. Distinct maxima in the anion currents generated by electron attachment to NTCDA, as a function of incident electron energy, are ascribed to capture of incident electrons into empty orbitals, i.e., the process referred to as shape resonance. The empty orbital energies of gas-phase NTCDA shifted to 1.2 eV lower energy reproduce satisfactorily the maxima of the unoccupied electronic states of a multilayer NTCDA film measured by means of the very low energy electron diffraction method and the total current spectroscopy measurement scheme. The present results indicate that the empty levels of individual NTCDA molecules are stabilized in the solid state, but their relative energies remain nearly unaltered. The stabilization energy in multilayer film of NTCDA molecules is likely due to attractive polarization forces. Fragmentation of the gas-phase NTCDA temporary parent anions via the DEA mechanism, the other issue of the present investigation, leads to the rupture of the bonds between the end carbonyl groups and the naphthalene core, and occurs at incident electron energies above 2 eV. Possible chemical changes in condensed NTCDA molecules initiated by the DEA mechanism under conditions of electron transport through the film are discussed.     

Comparative study of the electronic structure of pregnanolones by ab initio theory

Pregnanedione (5β‐pregnane, 3,20‐dione), pregnanolone (3β‐hydroxy‐5β‐pregnan‐20‐one), and epipregnanolone (3α‐hydroxy‐5β‐pregnan‐20‐one) result from the 5β‐reduction of progesterone [4‐pregnene, 3‐20‐dione (P)]. These P metabolites induce anesthesia and smooth muscle relaxation (nongenomic actions). In the present study, geometries and electronic structure of these steroids were assessed by ab initio calculations using the 6‐31G* basis set. Consequently, bond distances, valence angles, and dihedral angles were measured. In addition total energy, frontier orbitals, i.e., highest occupied molecular orbital (HOMO), lowest unoccupied molecular orbital (LUMO), dipole moment, and electrostatic potentials were calculated. Total energy was higher for P, followed by pregnanedione. Pregnanolones, the hydroxylated progestins, showed the lower energies. Concerning frontier orbitals, P showed the highest HOMO energy and the lowest LUMO energy. Pregnanedione showed lower HOMO and LUMO energy values than pregnanolone and epipregnanolone. P showed both HOMO and LUMO located at the A ring, including the π bond at C4, C5, and the carbonyl at C3. The HOMO in pregnanedione was included mostly in the A ring and the C3 carbonyl group, while the LUMO was shared by the carbonyl groups at C3 and C20. The frontier orbitals of pregnanolone and epipregnanolone were quite similar. The HOMO in both steroids included the B, C, and D rings and the carbonyl at C20. The LUMO was also similar in both pregnanolones including mostly the carbonyl at C20. The dipole moment was shorter for P and pregnanedione and directed toward the acetyl side chain at C17. Pregnanolone and epipregnanolone showed the dipole moment vector larger and directed toward the A ring. The electrostatic potentials were related mostly with the lone pairs of electrons from the oxygens. By the total energy and frontier orbitals energies of the hormones studied, it is concluded that the metabolism of progesterone toward its 5β‐reduced metabolites might be rationalized from the theoretical chemistry point of view. Besides, the importance of the A/B ring cis configuration, dipole moment, and electrostatic potential are highlighted as possible improving elements of molecular interactions to explain the nongenomic biological action of 5β‐reduced progestins. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 71: 433–440, 1999     

Insight into the acidic behavior of oxazolidin-2-one,its thione and selone analogs through computational techniques

Deprotonation thermochemistry of Oxazolidin-2-one (OXA), Oxazolidine-2-thione (OXA-S), and Oxazolidine-2-selone (OXA-Se) has been studied in order to find the most acidic site and relative acidities of these heterocyclics at various sites. The deprotonation enthalpies at MP2/6-311++G**//MP2/6-31+G* and B3LYP/6-31+G* levels, while the free energies for deprotonation process and pKa values at B3LYP/6-31+G* level both in gas and aqueous phase (using PCM continuum model) of the anions of the three heterocyclics have been computed at 298 K. Calculated aqueous phase pKa values of OXA vary by ~6–7 units from the experimental aqueous phase pKa values of OXA and its derivatives. The deprotonation at the nitrogen is favored in OXA over the carbon atoms in contrast to the OXA-S and OXA-Se where in the deprotonation at the carbon attached to the nitrogen is most preferred. Deprotonation at this carbon induces an important C–O bond rupture in OXA-S and OXA-Se promoting an energetically favored ring-opening process. The finding offers a rare case when C–H acidity is able to dominate over the N–H acidity. In order to explain the relative stabilities, relative acidities and deprotonation enthalpies various characteristics of these molecules as well as their anions such as molecular electrostatic potential surface (MEP), frontier molecular orbital (FMO) features, chemical hardness, softness have been governed. The three dimensional MEP maps and HOMO–LUMO orbitals encompassing these molecules yield a reliable relative stability and reactivity (in terms of acidity) map displaying the most probable regions for deprotonation. The differential distribution of the electrostatic potential over the neutral and anionic species of OXA, OXA-S, and OXA-Se molecules is authentically reflected by HOMO–LUMO orbitals and NBO charge distribution analysis. The lone pair occupancies, second order delocalization energies for orbital interactions and the distribution of atomic charges over the entire molecular framework as obtained from natural bond orbital (NBO) analysis are found to faithfully replicate the predictions from the MEP maps and HOMO–LUMO band gaps in respect of explaining the relative stabilities and acidities in most of the cases. Good linear correlations have been obtained between HOMO–LUMO gap and pKa values in the aqueous phase for OXA and OXA-S molecules.     

Effect of hyperconjugation on ionization energies of hydroxyalkyl radicals

On the basis of electronic structure calculations and molecular orbital analysis, we offer a physical explanation of the observed large decrease (0.9 eV) in ionization energies (IE) in going from hydroxymethyl to hydroxyethyl radical. The effect is attributed to hyperconjugative interactions between the sigma CH orbitals of the methyl group in hydroxyethyl, the singly occupied p orbital of carbon, and the lone pair p orbital of oxygen. Analyses of vertical and adiabatic IEs and hyperconjugation energies computed by the natural bond orbital (NBO) procedure reveal that the decrease is due to the destabilization of the singly occupied molecular orbital in hydroxyethyl radical as well as structural relaxation of the cation maximizing the hyperconjugative interactions. The stabilization is achieved due to the contraction of the CO and CC bonds, whereas large changes in torsional angles bear little effect on the total hyperconjugation energies and, consequently, IEs.     

Influence of resonance on the acidity of sulfides, sulfoxides, sulfones, and their group 16 congeners

The influence of resonance on the acidities of dimethyl sulfide (DMS), dimethyl sulfoxide (DMSO), and dimethyl sulfone (DMSO2) and their group 16 congeners (DMXO(n) for X = Se, Te, Po and n = 0-2) is examined using ab initio methods and the natural bond orbital (NBO) and natural resonance theory (NRT) analyses. Gas-phase acidities are evaluated using B3LYP-optimized geometries with coupled cluster energies and complete basis set extrapolation. The acidity of the DMSO(n) molecules increases with increasing coordination of the central S atom. Acidity also tends to increase when the central atom is substituted by a heavier group 16 atom. NRT analysis reveals significant resonance delocalization in the DMXO(n) molecules and their anions. On deprotonation, the DMXO(n) molecules undergo structural changes that are consistent with changes in the resonance character of the calculated charge densities. However, resonance cannot account for the trends in the deprotonation energies. Whereas the DMX- anions are more strongly resonance stabilized than their parent molecules DMX, the DMXO2(-) anions and DMXO2 molecules are nearly equally resonance stabilized. Thus, there appears to be no extra stabilization of DMXO2(-) compared to that of DMX- that would account for the enhanced acidity of DMXO2 relative to DMX.     

Geometric and electronic structure of methane adsorbed on a Pt surface

The electronic structure of methane adsorbed on Pt(977) is investigated using angle-resolved x-ray absorption spectroscopy (XAS) in combination with density functional theory spectrum calculations. XAS, which probes the unoccupied states atom specifically, shows the appearance of the symmetry-forbidden gas-phase lowest unoccupied molecular orbital due to s-p rehybridization. In addition new adsorption-induced states appear just above the Fermi level. A systematic investigation, where computed XA spectra are compared with the experiment, indicates elongation of the C-H bond pointing toward the surface to 1.18+/-0.05 A. The bond elongation arises due to mixing between bonding and antibonding C-H orbitals. Computed charge density difference plots show that no covalent chemical bond is formed between the adsorbate and substrate upon adsorption. The changes in electronic structure arise in order to minimize the Pauli repulsion by polarizing charge away from the surface toward the carbon atom of the methane molecule.