Stationary coupled cluster response: Role of cubic terms in molecular properties

We have demonstrated an application of a stationary coupled cluster response approach for molecular properties using an Euler functional. This involves terms which are of cubic power in cluster amplitudes. We have shown that these are important terms and have also discussed the convergence properties of the functional for higher order properties.     

Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs)

We present results of molecular dynamics simulations of fully hydrated DMPC bilayers performed on graphics processing units (GPUs) using current state-of-the-art non-polarizable force fields and a local GPU-enabled molecular dynamics code named FEN ZI. We treat the conditionally convergent electrostatic interaction energy exactly using the particle mesh Ewald method (PME) for solution of Poisson's Equation for the electrostatic potential under periodic boundary conditions. We discuss elements of our implementation of the PME algorithm on GPUs as well as pertinent performance issues. We proceed to show results of simulations of extended lipid bilayer systems using our program, FEN ZI. We performed simulations of DMPC bilayer systems consisting of 17,004, 68,484, and 273,936 atoms in explicit solvent. We present bilayer structural properties (atomic number densities, electron density profiles), deuterium order parameters (S(CD)), electrostatic properties (dipole potential, water dipole moments), and orientational properties of water. Predicted properties demonstrate excellent agreement with experiment and previous all-atom molecular dynamics simulations. We observe no statistically significant differences in calculated structural or electrostatic properties for different system sizes, suggesting the small bilayer simulations (less than 100 lipid molecules) provide equivalent representation of structural and electrostatic properties associated with significantly larger systems (over 1000 lipid molecules). We stress that the three system size representations will have differences in other properties such as surface capillary wave dynamics or surface tension related effects that are not probed in the current study. The latter properties are inherently dependent on system size. This contribution suggests the suitability of applying emerging GPU technologies to studies of an important class of biological environments, that of lipid bilayers and their associated integral membrane proteins. We envision that this technology will push the boundaries of fully atomic-resolution modeling of these biological systems, thus enabling unprecedented exploration of meso-scale phenomena (mechanisms, kinetics, energetics) with atomic detail at commodity hardware prices.     

Riboflavin Interactions with Oxygen—A Survey from the Photochemical Perspective

In this short review we provide some insights to the main processes that riboflavin is involved in upon absorption of a photon. We describe riboflavin properties in its interactions with oxygen, comparing them to the properties of some other singlet oxygen sensitizers. Data are provided on riboflavin photosensitizing properties in vivo and in vitro, and its properties as an endogenous singlet oxygen sensitizer are discussed. We additionally report flavin catalytic role in organic synthesis and photochemical reactivity in solutions of riboflavin and some of its derivatives.     

Comparing the density of states of binary Lennard-Jones glasses in bulk and film

We used Wang-Landau density of states Monte Carlo to study a binary Lennard-Jones glass-forming mixture in bulk and films between noninteracting walls. Thermodynamic properties are calculated using two different ensembles and film data are compared with the bulk. Bulk properties are in good agreement with previous simulations. We confirm the formation of a glass using various properties, e.g., energy, heat capacity, and pressure with temperature. We find a change in slope in the energy per particle and pressure as a function of temperature. We do not find any defined crystal structure. A higher glass transition temperature is found for the film.     

Thermo-mechanical and electro-optical properties of polymer dispersed liquid crystal films

We have observed a strong dependence of the electro-optical properties of polymer dispersed liquid crystal (PDLC) films on temperature. One plausible explanation for this dependence is the thermal expansion of the films. We investigated the thermal expansion of various PDLC films using a thermal mechanical analyser (TMA). As the temperature increased, the films expanded and their droplet size decreased, and their contrast, response time, and hysteresis changed simultaneously. We observed obvious changes of thermal expansion coefficient of the films. We studied the qualitative relationship between thermo-mechanical properties and electrooptical properties. The thermal expansion of PDLC films could be adjusted by changing the degree of cross-linking of the polymer.     

Chemical and Structural Changes in Blood Undergoing Laser Photocoagulation¶

The treatment of cutaneous vascular lesions (port wine stains etc.) using lasers has been guided by theories based on the “cold” or room‐temperature optical properties of the hemoglobin target chromophore. We have recently presented evidence showing that under the influence of laser irradiation, the optical properties of blood in vitro are time and temperature dependent. Such complications are not currently subsumed into the in vivo theory. Here, we study the time‐domain optical properties of blood undergoing photocoagulation in vitro using two newly developed time‐resolved techniques. We also study the asymptotic effect of laser photocoagulation on the chemical and structural properties of the components of the blood matrix. We present evidence showing that the photocoagulation process involves significant changes in the optical absorption and scattering properties of blood, coupled with photothermally induced chemical and structural changes. We demonstrate the first use of a laser to deliberately generate magnetic resonance imaging contrast in vitro. We show that this technique offers significant potential advantages to in vivo intravenous chemical contrast agent injection.     

Forecasting the characteristics of the explosives

The key techniques for forecasting of the properties of the explosives were presented. We acquired an array of the properties approximately for 200 explosives on the basis of literature information and own experimental data. Techniques of an evaluation of the main characteristics of the explosive transformation were developed. We forecasted properties of a series of compounds not synthesized earlier by computation methods. The experimental and computed data were combined into vast array of information approximately for 1000 explosives. The systematization of experimental data allows conclusions about the attained levels of efficiency and of safety, and also forecasting the properties of the promising explosives.     

Viscoelastic properties of dendrimers in the melt from nonequlibrium molecular dynamics

The viscoelastic properties of dendrimers of generation 1-4 are studied using nonequilibrium molecular dynamics. Flow properties of dendrimer melts under shear are compared to systems composed of linear chain polymers of the same molecular weight, and the influence of molecular architecture is discussed. Rheological material properties, such as the shear viscosity and normal stress coefficients, are calculated and compared for both systems. We also calculate and compare the microscopic properties of both linear chain and dendrimer molecules, such as their molecular alignment, order parameters and rotational velocities. We find that the highly symmetric shape of dendrimers and their highly constrained geometry allows for substantial differences in their material properties compared to traditional linear polymers of equivalent molecular weight.     

A theoretical approach to molecular single-electron transistors

We present theoretical methods and computational strategies of the effects of nanoparticles on linear optical properties of molecules. We present quantum mechanical-molecular mechanics response methods for calculating electromagnetic properties of molecules interacting with nanoparticles and we report strategies for calculating electronic and redox states of molecules sandwiched between gold nanoparticles.     

Modelling aqueous solutions near the critical point of water

We review the thermodynamic properties of dilute solution near the critical point of the solvent. Two examples are discussed, a solution of a non-electrolyte and a solution of an electrolyte. The limiting behavior of the electrolyte solutions is modelled with a Debye-Huckel term in the Helmholtz free energy. The partial molar properties, in particular the volume and isobaric thermal expansion are examined in detail. The derivation of these properties is introduced by considering the geometry of the thermodynamic surfaces near to and far from the critical point of the solvent. We conclude that the properties of solutions near the solvent critical point are dominated by that feature; solution properties cannot be adequately modelled without including the functional forms associated with the critical point.     

First principles study of neutral and anionic (medium-size) aluminum nitride clusters: AlnNn, n=7-16

We report the results of a theoretical study of AlnNn (n=7-16) clusters that is based on density functional theory. We will focus on the evolution of structural and electronic properties with the cluster size in the stoichiometric AlN clusters considered. The results reveal that the structural and electronic properties tend to evolve toward their respective bulk limits. The rate of evolution is, however, slow due to the hollow globular shape exhibited by the clusters, which introduces large surface effects that dominate the properties studied. We will also discuss the changes induced upon addition of an extra electron to the respective neutral clusters.     

A simple 1H NMR method for determining the σ-donor properties of N-heterocyclic carbenes

The σ-donor properties of NHC ligands (NHC?=?N-heterocyclic carbene) are crucial in controlling their interaction with transition metals, and as a consequence, to determine the selectivity and reactivity of NHCs in transition-metal-catalysis. Herein, we report a simple NMR method for estimating the σ-donor properties of NHC ligands based on a straightforward ¹H NMR measurement of ligand precursors. We present evaluation of σ-donating properties for a range of NHC ligands varied by structure and electronics that are relevant to transition-metal-catalysis. We expect that the simple measurement of σ-donating properties of NHCs, together with the known methods for evaluating sterics and π-backbonding, will enhance the understanding of the properties of NHCs in transition-metal-catalysis.     

Optical properties of human melanocytic nevi in vivo

We present an in vivo study of the optical properties of melanin present in melanocytic nevi of human subjects with Fitzpatrick skin type III (Caucasian descent) using optical spectroscopy. We show that the melanin absorption spectrum exhibits an exponential dependence on wavelength with a decay constant which follows a normal distribution characteristic of a random biological variable. Moreover, we demonstrate lack of correlation among melanin optical properties, melanin concentration and skin light scattering properties, which indicates that the true optical absorption of melanin can be measured free from confounding scattering effects. We also show that the average melanin absorption spectrum in vivo is in very good agreement with a previously reported oxygen photoconsumption action spectrum of melanin. Finally, we provide an overview of the emerging picture of the melanin absorption properties in vivo among various skin types and also among various skin lesions such as melanocytic nevi and melanoma.     

Microstructure and properties of polyamideimide/silica hybrids compatibilized with 3-aminopropyltriethoxysilane

In this work, we prepared and characterized polyamideimide (PAI)/silica hybrids compatibilized with 3-aminopropyltriethoxysilane (APTES). PAI/silica nanohybrid thin films were prepared using an in situ sol-gel process, followed by thermal imidization. We have investigated the microstructures and properties of the PAI/silica hybrids using FT-IR spectroscopy, X-ray diffraction, small-angle X-ray scattering (SAXS), and differential scanning calorimetry (DSC). We also measured their tensile properties, thermal properties, refractive indices, and dielectric constants. In general, the properties of the PAI/silica hybrids were optimized when the silica content was 6 wt.%.     

Self-assembly of fatty acids in the presence of amines and cationic components

Fatty acids can self-assemble under various shapes in the presence of amines or cationic components. We assemble and compare these types of self-assembly leading toward a catanionic system either with a cationic surfactant or with an amine component playing the role of counter-ion. First, we focus on the molar ratio as a key driving parameter. Known and yet un-known values from other quantities governing the colloidal properties of these systems such as structural surface charge, osmotic pressure, molecular segregation, rigidity, in plane colloidal interactions and melting transition are discussed. We include also recent results obtained on the interfacial and foaming properties of these systems. We will highlight the specificity of these self-assemblies leading to unusual macroscopic properties rich of robust applications.     

Surface tension measurements in freely suspended bubbles of thermotropic smectic liquid crystals

We present an experimental technique for the inflation of freely suspended films of thermotropic smectic liquid crystals to macroscopic bubbles. These bubbles have many properties in common with well known lyotropic soap bubbles, but on the other hand represent a completely different class of material with different physical properties and new phenomena. We describe the generation of such smectic bubbles and compare their physical properties with those of lyotropic soap bubbles. The measurement of inner pressure versus curvature is used for the determination of surface tensions of the smectic materials.     

Ab Initio simulations of nonstoichiometric Cd(x)Te(1-x) liquids

We present ab initio molecular-dynamics simulations for Cd(x)Te(1-x) liquids where the composition is nonstoichiometric. The simulations are performed following Born-Oppenheimer molecular dynamics. The required forces are obtained from a solution of the Kohn-Sham equation using ab initio pseudopotentials. We consider stoichiometries of the form: Cd(x)Te(1-x), where x=0.2, 0.4, 0.6, and 0.8. For each composition of the melt, we consider a range of temperatures near the experimentally determined liquid temperatures. We examine the microstructural properties of the melt, the viscosity, and self-diffusion properties of the liquid as a function of the stoichiometry and temperature. We also perform an analysis of the distribution of the electronic density of states in these liquids. We find that structural changes in the local order, experimentally predicted to occur when the concentration of Cd is increased, are closely related to changes in the electronic properties of the melt.     

New smectogens with (S)-2-methylbutyl lactate group in the terminal chain and chlorine-substituted molecular core

We report the synthesis and mesomorphic properties of new chiral materials based on (S)-2-methylbutyl lactate group in the chiral chains and a lateral substitution by a chlorine atom in the molecular core. We have studied mesomorphic properties and found that homologues with only one lactate and methylbutyl in the chain exhibit the SmC* phase in a broad temperature range. We established the spontaneous polarisation and tilt angle values. The pitch values are rather small, being within the range 360–450 nm. On the other hand, a homologue with one additional lactate in the chiral part does not exhibit the mesomorphic properties. We have tried to establish the effect of lateral substitution by comparing all studied compounds with previously prepared (S)-2-methylbutyl lactate derivatives with non-substituted molecular core.