Doubly charged benzene and isomeric dications. Fragmentation energetics and charge distributions calculated by MINDO/3 molecular orbital theory

MINDO/3 calculations for singlet and triplet doubly charged benzene [C₆H₆]²⁺ are in satisfactory agreement with the experimentally determined values of the vertical double ionization energy of benzene; calculations for straight chain isomeric structures are consistent with the observed kinetic energy release on fragmentation to [C₅H₃]⁺ and [CH₃]⁺. Symmetrical doubly charged benzene ions relax to a less symmetrical cyclic structure having sufficient internal energy to fragment by ring opening and hydrogen transfer towards the ends of the carbon chain. Fragmentation of [CH₃C₄CH₃]²⁺ to [CH₃C₄]⁺ and [CH₃]⁺ is a relatively high energy process (A), whereas both (B): [CH₃CHC₃CH₂]²⁺ to [CHC₃CH₂]⁺ and [CH₃]⁺ and (C): [CH₃CHCCHCCH]²⁺ to [CHCCHCCH]⁺ and [CH₃]⁺ may be exothermic processes from doubly charged benzene. Furthermore, the calculated energy for the reverse of process (A) is less than the experimentally observed kinetic energy released, whereas larger energies for the reverse of processes B and C are predicted. Heats of formation of homologous series [HC_n]⁺, [CH₃C_n]⁺, [CH₂C_n?2CH]⁺, [CH₃C_n?2CH₂]⁺ and [CH₂?CHC_n?3CH₂]⁺ with 1 < n < 6 are calculated to aid prediction of the most stable products of fragmentation of doubly charged cations. The homologous series [CH₂C_n?2CH]⁺ is relatively stable and may account for ready fragmentation of doubly charged ions to [C_nH₃]⁺; alternatively the symmetrical [C₅H₃]⁺ ion [CHCCHCCH]⁺ may be formed. Dicoordinate carbon chains appear to be important stabilizing features for both cations and dications.     

CH2 + transfer to pyridine nucleophiles: a means of producing α-distonic ions

The distonic radical cation C₅H₅N⁺?^·CH₂ can be generated by the reactions of neutral pyridine with the radical cations of cyclopropane, ethylene oxide, and ketene, as well as with the [C₃H₆]⁺ ion from fragmentation of tetrahydrofuran. The distonic product ion can be distinguished from isomeric methylpyridine radical cations because the former gives characteristic [M?CH₂]⁺, [M ? CH₂NCH]⁺, and a doubly charged ion, all of which are produced on collisional activation. Furthermore, the distonic species completely transfers CH₂ ⁺ to more nucleophilic, substituted pyridines. These properties are all consistent with the assigned distonic structure. Another distonic isomer, the (3-methylene) pyridinium ion, can be distinguished from the (1-methylene)pyridinium ion on the basis of their different fragmentation behaviors. The latter ion exhibits higher stability (lower reactivity) than the prototypal [·CH₂NH₃ ⁺], making available a distonic species whose bimolecular reactivity can be readily investigated.     

Effect of varying counterions on the sensitivity of electrohydrodynamic and fast atom bombardment mass spectrometry

The abundance of ion pairs (CA⁺) relative to that of doubly charged ions (C²⁺) in electrohydrodynamic (EH) mass spectra of a series of anions with a common dication in glycerol was found to increase in the order acetate < nitrite < chloride < bromide ≈ nitrate < iodide < perchlorate. Correlation with enthalpies of hydration for the anions suggests that this trend reflects the solution chemistry of ion association. These spectra also reveal that solvation rather than interactions with the extracting field is more important in determining the overall EH mass spectrometric sensitivity to doubly charged ions. Therefore, the use of anions that promote more extensive ion pairing enhances the overall sensitivity to multiply charged ions that otherwise interact strongly with the solvent, but reduces sensitivity to singly charged ions. These observations hold in fast atom bombardment mass spectrometry, surviving the invasive effects of the primary beam.     

A structural investigation of [C6H6]2+ and [C6H6]+˙ ions involved in charge exchange reactions

Mass-analysed ion kinetic energy spectra for collisional activation (CA) of [C₆H₆]⁺˙ formed via electron capture by [C₆H₆]²⁺ ions in collision with neutral benzene molecules have been compared for the C₆H₆ isomers benzene, 1,5-hexadiyne and 2,4-hexadiyne. Comparisons of fragment abundance and total CA fragment yields were also made for [C₆H₆]⁺˙ ions generated by electron ionization (EI). CA conditions of ion velocity and collision gas pressure were identical in these comparisons. In general the fragment abundance patterns for the ions formed by charge exchange were very similar to those for singly charged benzene ions generated by EI. However, significant variations in CA fragment yield (the ratio of the total CA fragment ion abundance to the abundance of the incident unfragmented ions) were observed. It is not clear from the results whether these variations reflect structurally different ions or ions of different internal energies. The CA spectra of [C₆H₆]⁺˙ ions derived from charge exchange reactions between the benzene dication and the target gases He, Ne, Ar, Kr and Xe have also been recorded and, once again, very similar fragment abundance patterns were observed along with large variations in total CA fragment yields. Charge exchange efficiency measurements are reported for reactions between the benzene dication and the targets He, Ne, Ar, Kr, Xe and C₆H₆ (benzene) and also for the doubly charged ions derived from the linear C₆H₆ isomers. In the latter case Xe and benzene targets were used. The energetics and efficiency measurements for the former reactions suggest that for targets such as He and Ne the processes probably involve excited states of the doubly charged ions. The efficiencies measured for the latter reactions were distinctly different for the three C₆H₆ isomers and may indicate a strong dependence of charge exchange cross-section on doubly charged ion structure.     

Mass Spectrometric Observation of Doubly Charged Alkaline‐Earth Argon Ions

Doubly charged diatomic ions MAr²⁺ where M=Mg, Ca, Sr or Ba have been observed by mass spectrometry with an inductively coupled plasma ion source. Abundance ratios are quite high, 0.1 % for MgAr²⁺, 0.4 % for CaAr²⁺, 0.2 % for SrAr²⁺ and 0.1 % for BaAr²⁺ relative to the corresponding doubly charged atomic ions M²⁺. It is assumed that these molecular ions are formed through reactions of the doubly charged metal ions with neutral argon atoms within the ion source. Bond dissociation energies (D₀) were calculated and agree well with previously published values. The abundance ratios MAr⁺/M⁺ and MAr²⁺/M²⁺ generally follow the predicted bond dissociation energies with the exception of MgAr²⁺. Mg²⁺ should form the strongest bond with Ar [D₀ (MgAr²⁺)=124 to 130 kJ mol^?1] but its relative abundance is similar to that of the weakest bound BaAr²⁺ (D₀=34 to 42 kJ mol^?1). The relative abundances of the various MAr²⁺ ions are higher than those expected from an argon plasma at T=6000 K, indicating that collisions during ion extraction reduce the abundance of the MAr²⁺ ions relative to the composition in the source. The corresponding singly charged MAr⁺ ions are also observed but occur at about three orders of magnitude lower intensity than MAr²⁺.     

Comparison of collision‐ versus electron‐induced dissociation of sodium chloride cluster cations

The collision‐induced dissociation (CID) and electron‐induced dissociation (EID) spectra of the [(NaCl)_m(Na)_n]ⁿ⁺ clusters of sodium chloride have been examined in a hybrid linear ion trap Fourier transform ion cyclotron resonance mass spectrometer. For singly charged cluster ions (n = 1), mass spectra for CID and EID of the precursor exhibit clear differences, which become more pronounced for the larger cluster ions. Whereas CID yields fewer product ions, EID produces all possible [(NaCl)_xNa]⁺ product ions. In the case of doubly charged cluster ions, EID again leads to a larger variety of product ions. In addition, doubly charged product ions have been observed due to loss of neutral NaCl unit(s). For example, EID of [(NaCl)₁₁(Na)₂]²⁺ leads to formation of [(NaCl)₁₀(Na)₂]²⁺, which appears to be the smallest doubly charged cluster of sodium chloride observed experimentally to date. The most abundant product ions in EID spectra are predominantly magic number cluster ions. Finally, [(NaCl)_m(Na)₂]^{+ .} radical cations, formed via capture of low‐energy electrons, fragment via the loss of [(NaCl)_n(Na)] ^. radical neutrals. Copyright © 2008 John Wiley & Sons, Ltd.     

Energy-dependent collision-induced dissociation of lithiated polytetrahydrofuran: Effect of the size on the fragmentation properties

The fragmentation properties of singly and doubly lithiated polytetrahydrofuran (PTHF) were studied using energy-dependent collision-induced dissociation. The product ion spectrum of [PTHF + Li]⁺ showed the formation of three different series corresponding to product ions with hydroxyl, aldehyde and vinyl end-groups. Interestingly, besides these series, two additional, non-lithiated product ions C₄H₉O⁺ and C₄H ₇ ⁺ were identified in the MS/MS spectra. The MS/MS of the doubly lithiated PTHF ([PTHF + 2Li]²⁺) with a number of repeat units ranging from 8 to 27 showed the formation of product ions similar to those of the singly lithiated series, however, doubly lithiated product ions and product ions formed by the loss of one Li⁺-ion from the precursor ion also appeared with significant abundances. Analysis of the breakdown curves for the singly and doubly charged PTHF indicated that the series A ions are formed most probably together with the series B ions, while members of the series C ions appeared at significantly higher collision energies. The fragmentation properties of [PTHF + Li]⁺ and [PTHF + 2Li]²⁺ were also interpreted using the survival yield method. It was found that the collision energy/voltage necessary to obtain 50% fragmentation (CV₅₀) was dependent linearly on the number of the repeat units, i.e., on the size, or the number of degrees of freedom (DOF).     

Comparison of collisional activation spectra of some positive ions produced both by charge reversal of negative ions and by decomposition of positive ions

The charge reversal collision induced decomposition mass analyzed ion kinetic energy spectrum of allyl anion has been compared with the collision induced dissociation mass analyzed ion kinetic energy spectrum of allyl cation and found to be identical except for the presence of +2 ions formed by charge stripping in the spectrum of the [C₃H₅]⁺ ion. Likewise, the collision induced dissociation mass analyzed ion kinetic energy charge reversal spectrum of [CH₃Se]^? has been compared with the collision induced dissociation mass analyzed ion kinetic energy spectrum of [CH₃Se]⁺ and found to be identical. A study of the pressure dependence of the collision induced dissociation mass analyzed ion kinetic energy spectrum of [C₃H₅]⁺ and [C₃H₅]^? showed increasing fragmentation with increasing collision gas pressure, and suggests that a greater mean number of collisions converts more energy to internal modes in the collision induced dissociation mass analyzed ion kinetic energy experiment even at low pressures.     

Gas‐Phase Interactions between Lead(II) Ions and Cytosine: Tandem Mass Spectrometry and Infrared Multiple‐Photon Dissociation Spectroscopy Study

Gas‐phase interactions between Pb²⁺ ions and cytosine (C) were studied by combining tandem mass spectrometry, infrared multiple photon dissociation spectroscopy, and density functional theory (DFT) calculations. Both singly and doubly charged complexes were generated by electrospray. The [Pb(C)?H]⁺ complex was extensively studied, and this study shows that two structures, involving the interaction of the metal with the deprotonated canonical keto‐amino tautomer of cytosine, are generated in the gas phase; the prominent structure is the bidentate form involving both the N1 and O2 electronegative centers. The DFT study also points out a significant charge transfer from the nucleobase to the low‐lying p orbitals of the metal and a strong polarization of the base upon complexation. The various potential energy surfaces explored to account for the fragmentation observed are consistent with the high abundance of the [PbNH₂]⁺ fragment ion.     

Mass spectrometric study on 2-amino-as-triazino[6,5-c]quinoline and some of its derivatives

Electron impact induced fragmentations of 2-amino-as-triazino[6,5-c]quinoline and its 2-methylamino, 2-dimethylamino and 2-benzylamino analogues have been investigated. The main primary decomposition route of both the singly and the doubly charged molecular ions is the N₂ loss. For the singly charged ions the critical energy of this reaction is 110±10 kJ mol^?1 and the kinetic energy release is 61±4 kJ mol^?1. For the doubly charged ions these values are 90±10 kJ mol^?1 and 5±2 kJ mol^?1, respectively, indicating a significantly different reaction profile. The further fragmentation of [M? N₂]⁺˙ ions consists of radical eliminations from the 2-amino group with cleavages of the α- and β-bonds. Here a significant substituent effect is eliminations found suggesting an intramolecular cyclization reaction with a substituent migration. D and ¹⁵N labelling experiments have shown a minor extent of randomization of the labelled atoms and the occurrence of other hidden skeletal rearrangements during the fragmentation.     

Doubly charged ion mass spectra: III—N-alkanes

Doubly charged ion mass spectra have been obtained for 15 n-alkane hydrocarbons. Spectra were measured using a Nier-Johnson geometry Hitachi RMU-7L mass spectrometer operated at 1.6kV accelerating voltage. Fragment ions, which resulted from C? C bond rupture and extensive H loss, dominated the spectra. Molecular ions have not been observed. The most intense ions in the doubly charged ion mass spectra of n-alkanes were [C₂H₄]²⁺, [C₃H₂]²⁺, [C₄H₃]²⁺, [C₅H₂]²⁺, [C₆H₆]²⁺, [C₆H₈]²⁺, [C₇H₆]²⁺, [C₇H₈]²⁺, [C₈H₆]²⁺ and [C₈H₈]²⁺. Appearance energies for forming the prominent doubly charged fragment ions have been measured and range from 27.5 eV to energies greater than 60eV. A geometry optimized SCF approach has been used to compute the energies and structures of prominent ions in the doubly charged mass spectra.     

A photoionization study of [C4H7]+ ions in the gas phase

The ionization and [C₄H₇]⁺ appearance energies for a series of C₄H₇CI and C₄H₇Br isomers have been measured by dissociative photoionization mass spectrometry. Cationic heats of formation, based on the stationary electron convention, are derived. No threshold ion is observed with a heat of formation corresponding to the trans-1-methylallyl cation, although there is evidence for formation of the less stable cis isomer. A 298 K heat of formation of 871 kJ mol^?1 is obtained for the cyclopropylcarbinyl cation, with the cyclobutyl cation having a higher value of 886 kJ mol^?1. At the HF/6-31G^** level, ab initio molecular orbital calculations show the 2-butenyl, isobutenyl and homoallyl cations to be stable forms of [C₄H₇]⁺, being less stable than the trans-1-methylallyl cation by 101 kJ mol^?1, 159 kJ mol^?1 and 164 kJ mol^?1, respectively. However, threshold formation is not observed for any of these ions, the fragmentation of appropriate precursor molecules producing [C₄H₇]⁺ ions with lower energy structures.     

Fragmentation of Singly,Doubly, and Triply Charged Hydrogen Deficient Peptide Radical Cations in Infrared Multiphoton Dissociation and Electron Induced Dissociation

Gas phase fragmentation of hydrogen deficient peptide radical cations continues to be an active area of research. While collision induced dissociation (CID) of singly charged species is widely examined, dissociation channels of singly and multiply charged radical cations in infrared multiphoton dissociation (IRMPD) and electron induced dissociation (EID) have not been, so far, investigated. Here, we report on the gas phase dissociation of singly, doubly and triply charged hydrogen deficient peptide radicals, [M + nH]^(n+1)+· (n = 0, 1, 2), in MS³ IRMPD and EID and compare the observed fragmentation pathways to those obtained in MS³ CID. Backbone fragmentation in MS³ IRMPD and EID was highly dependent on the charge state of the radical precursor ions, whereas amino acid side chain cleavages were largely independent of the charge state selected for fragmentation. Cleavages at aromatic amino acids, either through side chain loss or backbone fragmentation, were significantly enhanced over other dissociation channels. For singly charged species, the MS³ IRMPD and EID spectra were mainly governed by radical-driven dissociation. Fragmentation of doubly and triply charged radical cations proceeded through both radical- and charge-driven processes, resulting in the formation of a wide range of backbone product ions including, a-, b-, c-, y-, x-, and z-type. While similarities existed between MS³ CID, IRMPD, and EID of the same species, several backbone product ions and side chain losses were unique for each activation method. Furthermore, dominant dissociation pathways in each spectrum were dependent on ion activation method, amino acid composition, and charge state selected for fragmentation.     

Quantitative aspects of analyzing small molecules – monitoring singly or doubly charged ions? A case study of ximelagatran

Precision, reproducibility and lower limit of quantitation (LLOQ) are important characteristics of a quantitative method. We have investigated these properties for Ximelagatran (Xi), which has a high tendency to form doubly charged ions in electrospray ionization (ESI), by studying the percentage of doubly charged species formed when varying the formic acid (FA) concentration, analyte concentration, amount of organic modifier and flow rate. It was found that the percentage of [Xi + 2H]²⁺ can be controlled to be more than 90% or less than 10% by varying the amount of FA present, and that the change between these values is dramatic. Furthermore, the percentage of [Xi + 2H]²⁺ formed decreases with increased analyte concentration and increased flow rate. No apparent relationship with the amount of organic modifier was found. The results have the implication that, by carefully controlling the selected parameters, the LLOQ, precision and reproducibility can be improved. We have compared the fragmentation of the singly and doubly charged species and concluded that the [Xi + 2H]²⁺ ion is more inclined to undergo fragmentation than [Xi + H]⁺. As a consequence, unusual instrumental settings had to be used for the experiments. The fragmentation patterns are to a great extent similar, but the doubly charged species is more inclined to generate low‐mass product ions. Copyright © 2010 John Wiley & Sons, Ltd.     

A comparison of the peptide fragmentation obtained from a reflector matrix-assisted laser desorption-ionization time-of-flight and a tandem four sector mass spectrometer

The types, extent, and overall distribution of peptide fragmentation produced by matrix-assisted laser desorption-ionization-postsource decay (MALDI-PSD) on a reflector time-of-flight mass spectrometer were compared with those obtained from high and low energy collision-induced dissociation (CID) on a four-sector mass spectrometer and from liquid secondary ion mass spectrometry (LSIMS) ion source fragmentation and LSIMS metastable ion (MI) decomposition on a two-sector mass spectrometer. The model peptides studied had sequences and compositions that yielded predominantly either N- or C-terminal fragmentation from CID. For des-Arg¹ and des-Arg⁹ bradykinin (i.e., H-PPGFSPFR-OH and H-RP-PGFSPF-OH, respectively), the types of fragment ions and the extent to which each type is formed in both MALDI-PSD and low energy CID spectra are remarkably similar. This observation suggests that both methods deposit comparable internal energies (IE) into [M + H]⁺ precursor ions. The distribution of N-terminal, C-terminal, immonium, and internal fragmentation from MALDI-PSD spectra of des-Arg¹ and des-Arg⁹ bradykinin did not change dramatically with respect to the terminal arginine position, contrary to those from LSIMS MI decomposition, high and low energy CID spectra. This observation in combination with the prominent immonium, internal, and minus 17 fragment ion types in PSD indicates that the imparted IE from MALDI and the 14 µs of flight time may promote steady-state decomposition kinetics. Fragmentation distributions of MALDI-PSD spectra are also similar to those in LSIMS spectra. This implies that the distribution of protonation sites in [M + H]⁺ is comparable for both techniques.     

Metastable ion studies. III—composite metastable peaks in fragmentations of some small hydrocarbon cations

Composite metastable peaks are generated in the unimolecular fragmentations (i) [C₃H₅]⁺ → [C₃H₃]⁺ + H₂ (flat-top upon flat-top) and (ii) [C₄H₉]⁺ → [C₃H₅]⁺ + CH₄ (flat-top and gaussian). The measurement of appearance potentials and kinetic energy releases lead us to conclude, in agreement with earlier proposals, that in (i) the components can arise from the generation of the isomeric cyclopropenium and propargyl daughter cations. In (ii) the components are proposed to arise from the fragmentation of tert- and sec-butyl cations yielding allyl as the common daughter ion. The composite peak observed in the fragmentation (iii) [C₃H₄]⁺· → [C₃H₃]⁺ + H· is shown to be present only if the decomposing molecular ion is large enough to also produce [C₆H₈]²⁺ ions. The second component in (iii) then arises from the reaction [C₆H₈]²⁺ → [C₆H₆]²⁺ + H₂.     

Are liquid chromatography/electrospray tandem quadrupole fragmentation ratios unequivocal confirmation criteria?

Multiple reaction monitoring (MRM) ratios as provided by tandem mass spectrometers are used to confirm positive residue findings (e.g. veterinary drugs or pesticides). The Commission Decision 2002/657/EEC defines tolerance levels for MRM ratios, which are intended to prevent the reporting of false positives. This paper reports findings where blank sample extracts have been spiked by a drug (difloxacin) and the corresponding measured MRM ratios significantly deviated from MRM ratios observed in matrix‐free solution. The observation was explained by the formation of two different [M+H]⁺ analyte ions within the electrospray ionization (ESI) interface. These two ions vary only by the site of analyte protonation. Since they are isobaric, they are equally transmitted through the first quadrupole, but are differently fragmented in the collision chamber. The existence of two isobaric ions was deduced by statistical data and the observation of a doubly charged analyte ion. It was hypothesized that the combined presence of [M+H]⁺ and [M+2H]²⁺ implies the existence of two different singly charged ion species differing only by the site of protonation. Low‐ and high‐energy interface‐induced fragmentation was performed on the samples. The surviving precursor ion population was mass selected and again fragmented in the collision chamber. Equal product ion spectra would be expected. However, very different product ion spectra were observed for the two interface regimes. This is consistent with the assumption that the two postulated isobaric precursor ions show different stability in the interface. Hence the abundance ratio among the two types of surviving precursor ions will shift and change the resulting product ion spectra. The existence of the postulated singly charged ions with multiple chargeable sites was finally confirmed by successful ion mobility separation. Copyright © 2009 John Wiley & Sons, Ltd.     

Doubly charged ion mass spectra: IV—chlorinated and brominated alkanes

Doubly charged ion mass spectra have been obtained for 42 chlorinated and brominated n-alkane (methyl through octyl) hydrocarbons. A double focusing Hitachi RMU-7L mass spectrometer, operated at 1.6kV accelerating voltage, has been used to measure the spectra. Molecular doubly charged ions have not been observed. Intense fragment ions have been produced from extensive H and halogen loss as well as C? C bond rupture of the parent molecule. The most abundant ions in the doubly charged ion spectra observed in this investigation resulted from reactions of [Cl]²⁺˙, [Br]²⁺˙, [CCL₂]²⁺, [C₂H₂Cl]²⁺˙, [C₃H₂]²⁺, [C₃HCl]²⁺, [C₃HBr]²⁺, [C₄H₃]²⁺˙, [C₄H₄]²⁺, [C₄H₆Br]²⁺˙, [C₄H₈Br]²⁺˙, [C₅H₂]²⁺, [C₆H₆]²⁺, [C₆H₈]²⁺ and [C₇H₈]²⁺. The prominent doubly charged fragment ions formed by electron impact of the smaller halogenated alkanes generally contained halogen, whereas ions of the type [C_nH_x]²⁺ were dominant in the spectra of higher molecular weight mono- and dihalogenated alkanes. Appearance energies of several ions have been measured. A geometry optimized quantum mechanical SCF treatment has been used to compute energies, charge densities and structures of doubly charged halogenated alkane ions.     

Effect of electrospray ionization conditions on low-energy tandem mass spectra of peptides

The effect of electrospray ionization (ESI) conditions on low-energy tandem mass spectra of peptides in the relative molecular mass range 400–1200 was examined. For singly charged peptide ions the source skimmer potential (which determines the degree of acceleration of the ions through the intermediate pressure region in the source) can strongly influence the extent of fragmentation observed in tandem mass spectra, especially at low collision energies. For each peptide there is an optimum skimmer potential which represents a balance between generating ions with sufficient internal energy for subsequent tandem mass spectrometric experiments and inducing the onset of other processes such as source fragmentation. The fragmentation which can be achieved in tandem mass spectra with high skimmer potentials differs from ESI source fragmentation for the same peptides. We have found that fragmentation in ESI mass spectra depends both on skimmer potential and on solvent pH, presumably because the latter determines the proportion of doubly charged species generated from a given peptide. Low-energy tandem mass spectra of peptides following ESI are equally as sensitive to peptide structure and the type of adduct studied (e.g. [M + H]⁺ vs. [M + NH₄]⁺) as tandem mass spectra obtained following older ionization methods such as fast atom bombardment.