Theoretical study on the isomerization and tautomerism in barbituric acid

Isomerization and tautomerism of 16 isomers of barbituric acid (BA) were studied at the MP2 and B3LYP levels of theory. Activation energies (E _a), imaginary frequencies (υ), and Gibbs free energies (ΔG ^#) of the amine-imine and keto-enol tautomerisms and O–H internal rotations were calculated. The activation energies of amine-imine tautomerisms were in the range of 110–200 kJ/mol and for keto-enol tautomerisms were larger than 200 kJ/mol. The calculated activation energies of internal O–H rotations were smaller than 60 kJ/mol. Effect of micro-hydration on the transition state structures and activation energies of the tautomerisms were also investigated. Water molecule catalyzed the tautomerisms and decreased the activation energies of both the amine-imine and keto-enol tautomerisms about 100–120 kJ/mol.     

Theoretical study on keto–enol tautomerism and isomerization in pyruvic acid

Isomerization and tautomerism of 12 isomers of pyruvic acid including 4 keto and 8 enol forms were studied at the MP2 and B3LYP levels of theory using 6‐311++G(2df,p) basis set, separately. Activation energy (E_a), imaginary frequency (υ), and Gibbs free energy (ΔG^#) of the considered isomerization and tautomerism reactions were calculated. Interconversion of the enol forms proceeds through two paths: (i) proton transfer and (ii) internal rotation. Activation energies for the proton transfer paths were in the range of 125–145 kJ/mol and for the internal rotation paths were in the range of 5–45 kJ/mol. Keto–enol tautomerism of pyruvic acid proceeds only through proton transfer route and their activation energies were in the range of 200–300 kJ/mol. Effect of microhydration on the transition state structures and activation energies was also investigated. It was found that the presence of a water molecule catalyzes the isomerization and tautomerism reactions of pyruvic acid so that the activation energies decrease. © 2013 Wiley Periodicals, Inc.     

Theoretical and experimental study of imine-enamine tautomerism of condensation products of propanal with 4-aminobenzoic acid in ethanol

The tautomerism of the reaction products of propanal with 4-aminobenzoic acid in ethanol was studied by J-modulated spin-echo (JMOD) ¹³C NMR spectroscopy and gradient-enhanced heteronuclear (ge-2D) ¹H–¹³C HSQC spectroscopy. The existence of imine and enamine tautomeric forms of the reduced compounds in solution was established. The tautomeric equilibrium of the condensation product of propanal with 4-aminobenzoic acid in ethanol was found to be shifted toward the imine form. Quantum chemical calculations by the density functional theory (DFT) method demonstrated that the 4-(N-propylidene)aminobenzoic acid molecule forms a stronger hydrogen bond with an ethanol solvent molecule compared to the enamine molecule, resulting in a higher stability of the ethanol adduct of azomethine compared to the adduct of enamine.     

3-羟基-2-吡啶亚胺异构反应的机理

在RHF-6-31G,MP2/6-31G和MP2/6-31G水平上,对3-羟基-2-吡啶亚胺的气相、水分子作为催化剂的异构化反应进行了研究,结果表明,气象异构难于进行,水分子作为催化剂参与反应过程是目标反应所循的反应路径。     

Infrared spectra of a species of astrochemical interest: aminoacrylonitrile (3-amino-2-propenenitrile)

Ammonia easily reacts on cyanoacetylene in the gas phase or in a solvent to form the Z- and E-isomers of aminoacrylonitrile (3-amino-2-propenenitrile, 2). This kinetically stable enamine presents interest for its possible presence in the interstellar medium, the comets, the atmospheres of Planets including the Primitive Earth, and from a theoretical point of view. B3LYP/6-311+G(3df,2p) and G2 calculations indicate that the imine isomer is significantly less stable than the enamine 2. DFT and G2 calculations indicate that the Z-isomer of compound 2 lies ca. 8.0 kJ mol(-1) lower in energy than the E-isomer. The infrared spectra of the aminoacrylonitrile, in both the gas and condensed phases were recorded in the range 500-4000 cm(-1). Consistent with the theoretical calculations, the imine and the E-isomer of the enamine have never been detected in the infrared spectrum of a gaseous sample and only the Z-isomer has been observed. With a neat sample in the condensed phase, IR spectra of a 1:1 and 20:1/Z:E mixtures were recorded. The comparison of these data with the spectrum of the Z-isomer in the gas phase allowed us to deduce the IR spectrum of the E-isomer. The E-Z isomerization takes place through a torsion around the C=C bond. A possible mechanism involving a previous enamine-imine tautomerism must be discarded because it implies a much larger barrier than the direct isomerization process. Consistently, the presence of a deuterium atom has not been observed on the sp2 carbon of the products of distillation of a 1:1/E:Z mixture of the NCCH=CHND2.     

A theoretical study of topomerization of imine systems: Inversion,rotation or mixed mechanisms?

The different mechanisms, rotation, inversion, or intermediate mechanism, by which occur the topomerization of imine systems R₂ CN X have been studied by applying ab initio, B3LYP, and MP2 methods. The effect of a wide variety of substituents R and X on the isomerization pathway have been examined by computing fully optimized structures of the ground and transition states (136 isomers belonging to different imine families were studied and more than 300 transition structures were determined at various levels of theory). Energy barriers have been also obtained and it was found that the groups R and X have a strong influence on the type of mechanism involved and the activation energies. Thus, and depending on the type of substituents, transition state structures related to the following kinds of processes were found: pure inversion, intermediate mechanisms, rotation, and enhanced rotation (hyper‐rotation). In turn, the corresponding activation energies range between very low (<10 kcal/mol) and extremely high (> 70 kcal/mol) values. A simple index that allows us to quantify the percentage of inversion or rotation mechanism is proposed. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2010     

Nitrogen bridgehead compounds. Part 35. Structures of α-formyl-2,3-polymethylene-3,4-dihydroquinazolin-4-ones

The structures of the title compounds bearing a five-, six- or seven-membered A ring have been investigated by uv and ¹H and ¹³C nmr spectroscopy. The imine-enol-enamine (I-II-III) tautomerism of these compounds depends greatly on the ring size. A significant solvent-dependence is observed only for the five-membered-ring compounds 1 and 2 , which in ethanolic solution exist predominantly in the imine form I, and in chloroform solution in the enol form II. The compounds with a six-membered A ring, 3 and 4 , are mainly in the enamine form III. On protonation, 3 and 4 change into the E and Z isomeric mixture of the enol tautomer II. The seven-membered-ring compound 5 is a mixture of the imine I and the enamine III tautomers.     

A DFT study of H-isomerisation in alkoxy-, alkylperoxy- and alkyl radicals: Some implications for radical chain reactions in polymer systems

Intramolecular 1-n H-shift (n = 2, 3… 7) reactions in alkoxy, alkyl and peroxy radicals were studied by density functional theory (DFT) at the B3LYP/6-311+G∗∗ level and compared with respective intermolecular H-transfers. It was found that starting from 1 to 3 H-shift the barrier heights stepwise decrease with increasing n reaching minimum for 1-5 and 1-6 H-shifts. This dependence can be ascribed to the decrease of the strain with increasing transition state (TS) ring size, which is minimal in six- and seven-member rings. The barrier heights of H-shifts in alkyl radicals are systematically larger than those in alkoxy radicals: the respective activation energies (E_a) of 1-5 and 1-6 H-shifts are about 59-67 kJ/mol for alkyl radical and 21-34 kJ/mol for alkoxy radicals. Further increase of the TS ring size in 1-7 H-shifts leads to the increase of the barrier to 44 kJ/mol in the hexyloxy radical and 84 kJ/mol for n-heptyl radical. We have also found that intermolecular H-transfer reactions in all three types of free radicals have smaller barriers than respective intramolecular 1-5 or 1-6 H-shifts by 4-25 kJ/mol. The mentioned difference can be explained in terms of enhanced nonbonding repulsion interaction in the cyclic TS structures compared to respective intermolecular TS. B3LYP/6-311+G∗∗ geometric parameters and imaginary frequencies for 1-n H-shifts TS are consistent with respective calculated barrier heights. Reactivity of some other radicals compared to alkoxy, peroxy and alkyl radicals as well as other factors influencing their reactivity (π-conjugation, steric effect and ring strain in cyclic TS, etc.) are also briefly discussed in relation to free radical reactions in polymer systems.     

Formaldehyde oxime <--> nitrosomethane tautomerism

Formaldehyde oxime <--> nitrosomethane tautomerism, isomeric nitrone, and their common cations and anions are studied with Gaussian-2 theory using MP2(full)/6-31G geometries and with density functional theory using B3LYP/6-311+G**. Geometrical parameters, harmonic vibrational frequencies, relative stabilities, conformational stabilities, and ionization energies are compared with experimental gas-phase data when available. The formaldehyde oxime <--> nitrosomethane tautomerism is compared with the amide <--> imidol, imine <--> enamine, keto <--> enol, and nitro <--> aci-nitro tautomeric processes. Solvent effects are estimated by the self-consistent isodensity polarizable continuum model (SCIPCM). The influence of hydrogen bonding interactions with the solvent is addressed by including two water molecules. In the final evaluation, formaldehyde oxime is 15.8 kcal/mol more stable than nitrosomethane when the aqueous solvation correction of 3.8 kcal/mol is applied to the G2 energies. Unsolvated formaldehyde oxime is estimated to be 11.1 kcal/mol more stable than nitrone. The estimated gas-phase ionization energies (G2) are 362.5 kcal/mol for formaldehyde oxime, 350.6 kcal/mol for nitrosomethane, and 351.4 kcal/mol for nitrone.     

Resolution of the enantiomers of tetrahydrozoline by chiral HPLC. The racemization of the enantiomers via an imine–enamine tautomerism

Resolution of the enantiomers of the sympathomimetic drug tetrahydrozoline was obtained by chiral HPLC. The isolated enantiomers racemize easily and chiral HPLC experiments allowed the determination of the racemization rate constant. This process occurs via an imine–enamine tautomerism which was studied by UV and ¹H NMR spectroscopies.     

Facile Synthesis of Chiral Cyclic Ureas through Hydrogenation of 2‐Hydroxypyrimidine/Pyrimidin‐2(1H)‐one Tautomers

A facile access to optically active cyclic ureas was developed through palladium‐catalyzed asymmetric hydrogenation of pyrimidines containing tautomeric hydroxy group with up to 99 % ee. Mechanistic studies indicated that reaction pathway proceed through hydrogenation of C=N of the oxo tautomer pyrimidin‐2(1H)‐one, acid‐catalyzed isomerization of enamine–imine, and hydrogenation of imine pathway. In addition, the chiral cyclic ureas are readily converted into useful chiral 1,3‐diamine and thiourea derivatives without loss of optical purity.     

Synthesis of novel 3-(α-arylhydrazono-1,3,4-oxadiazol-2-ylmethyl)-2-oxo-1,2-dihydroquinoxalines and their characteristic tautomerism between the hydrazone imine and diazenyl enamine forms

The reactions of 3-(α-arylhydrazono)hydrazinocarbonylmethyl-2-oxo-1,2-dihydroquinoxalines 1a,b with triethyl orthoesters resulted in the intramolecular cyclization to give the 3-(α-arylhydrazono-1,3,4-oxadiazol-2-ylmethyl)-2-oxo-1,2-dihydroquinoxalines 4a–d , but not the 1,2,4,5-tetrazepinylquinoxalines 5a–d . The cyclization mode into the 1,3,4-oxadiazole ring was confirmed by the alternate syntheses of 4a,c from the reactions of 3-(1,3,4-oxadiazol-2-ylmethylene)-2-oxo-1,2,3,4-tetrahydroquinoxalines 6a,b with o-chlorophenyl diazonium salts, respectively. Moreover, 4a–d exhibited an interesting tautomerism between the hydrazone imine form A and diazenyl enamine form B.     

13C NMR spectroscopy of [4.n.0] bicyclic compounds: Assignment of the ring junction configuration from ring junction configuration from ring junction 13C chemical shifts—application and limits

Several 6-methyl-9-carbamoyltetrahydro-4H-pyrido[1,2-α]pyrimidin-4-ones have been prepared using phosgene iminium chloride. These compounds can exist in equilibrium as the cis (3A) imine ? (3B) enamine ? trans (3C) imine. ¹H, ¹³C and ¹⁵N NMR prove that the cis- and trans-imine isomers are predominant in the equilibrium. ¹H NMR data reveal that the share of the 3B enamine form is negligible at measurable concentrations. The isomeric ratio 3A:3C is time dependent and can be monitored by measuring the CH₃? C-6 and (CH₃)₂N signals. The ¹³C NMR data show that doublets in the range 42–45 ppm for C-9 are only compatible with the imine forms 3A and 3C. The SCS values of the CH₃? C-6 and OCN(CH₃)₂ groups were calculated and used for identification of the cis and trans isomers. ¹⁵N NMR data show that the N-1 chemical shift of the imine is approximately ? 140 ppm for compound 3, whereas that of a fixed enamine is around ? 267.8. This provides additional support for the predominance of the imine tautomers in the equilibrium 3A ? 3B ? 3C. ¹⁵N data allow the stereoisomers 3A and 3C to be distinguished.     

α-羟基化吡咯烷亚硝胺代谢及形成DNA加合物反应机理的理论研究

采用密度泛函理论, 在B3LYP/6-31G**水平上, 研究了气相和水溶剂中, α-羟基化吡咯烷亚硝胺(α-hydroxylation-NPYR, A)代谢为终致癌物重氮氢氧化物(B)、重氮烷阳离子(C)和氧离子(D), 以及C与鸟嘌呤碱基相互作用的反应机理. 化合物A代谢为终致癌物, 涉及异构化和质子化过程, 是相对容易进行的放热反应. 终致癌物C与鸟嘌呤在N7位形成DNA加合物F和G的反应, 遵循S_N2机理. 加合物G由F异构形成, 且有相对高的异构化能(气相: 244.77 kJ/mol; 水溶剂中: 234.83 kJ/mol), 这与实验上得到加合物G是主要癌变物的结果一致.     

How to drive imine–enamine tautomerism of pyronic derivatives of biological interest – A theoretical and experimental study of substituent and solvent effects

An investigation of the tautomerism of five series of aminated pyronic compounds of pharmacological interest was carried out using NMR experiments and standard quantum mechanical B3LYP/6-311+G** calculations. The obtained results indicate that among four possible tautomers, imine and enamine forms are the two predominating ones in the gas phase as well as in solution. Depending on the nature of the substituting group, the enamine or the imine form is the most stable tautomer, the calculations being in agreement with experiment. The calculated equilibrium constants in the gas phase and in solution show that the enamine form is stabilized by polar solvents, in all cases. NBO analysis explains well the predominance of a form over another one when changing a substituting group. We give indications on how to favour the imine form which is preferred for synthesis purposes.     

Ethylbenzene solubility,diffusivity, and permeability in poly(dimethylsiloxane)

The pure‐gas sorption, diffusion, and permeation properties of ethylbenzene in poly(dimethylsiloxane) (PDMS) are reported at 35, 45, and 55 °C and at pressures ranging from 0 to 4.4 cmHg. Additionally, mixed‐gas ethylbenzene/N₂ permeability properties at 35 °C, a total feed pressure of 10 atm, and a permeate pressure of 1 atm are reported. Ethylbenzene solubility increases with increasing penetrant relative pressure and can be described by the Flory–Rehner model with an interaction parameter of 0.24 ± 0.02. At a fixed relative pressure, ethylbenzene solubility decreases with increasing temperature, and the enthalpy of sorption is −41.4 ± 0.3 kJ/mol, which is independent of ethylbenzene concentration and essentially equal to the enthalpy of condensation of pure ethylbenzene. Ethylbenzene diffusion coefficients decrease with increasing concentration at 35 °C. The activation energy of ethylbenzene diffusion in PDMS at infinite dilution is 49 ± 6 kJ/mol. The ethylbenzene activation energies of permeation decrease from near 0 to −34 ± 7 kJ/mol as concentration increases, whereas the activation energy of permeation for pure N₂ is 8 ± 2 kJ/mol. At 35 °C, ethylbenzene and N₂ permeability coefficients determined from pure‐gas permeation experiments are similar to those obtained from mixed‐gas permeation experiments, and ethylbenzene/N₂ selectivity values as high as 800 were observed. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 1461–1473, 2000     

Solvent-assisted catalysis mechanism on Keto–enol tautomerism of cyameluric acid

The keto–enol tautomerism of cyameluric acid, both in gas phase and in water and methanol solution, has been studied at the B3LYP/6-31++g(d,P) level of theory in this paper. The harmonic frequencies of all the structures are calculated. The results show that the transition states of the tautomerism are 4-membered ring conformations in gas phase, whereas 6-membered ring conformations in solution. In the first proton transfer, activation energy ΔE^# is 56.4 and 50.9 kJ/mol for water and methanol solution, respectively, which is much lower than that in gas phase (163.2 kJ/mol). Solvent molecules (water and methanol) produce an important catalytic effect in the tautomerism, especially for methanol-solvated system. NBO analysis shows that there is a strong interaction between cyameluric acid and solvent molecules in transition states. AIM charge analysis indicates that the keto–enol tautomerism shows a certain degree of proton transfer character. From the reaction enthalpy and reaction rate point of view, keto–enol tautomerism in water-solvated and methanol-solvated system is easier than that in gas phase. The keto–enol tautomerisms are endothermic both in gas phase and in solution, so the enol forms are less stable than the keto ones.     

Peptide cation-radicals. A computational study of the competition between peptide N-Calpha bond cleavage and loss of the side chain in the [GlyPhe-NH2 + 2H]+. cation-radical

Cation‐radicals and dications corresponding to hydrogen atom adducts to N‐terminus‐protonated N_α‐glycylphenylalanine amide (Gly‐Phe‐NH₂) are studied by combined density functional theory and Møller‐Plesset perturbational computations (B3‐MP2) as models for electron‐capture dissociation of peptide bonds and elimination of side‐chain groups in gas‐phase peptide ions. Several structures are identified as local energy minima including isomeric aminoketyl cation‐radicals, and hydrogen‐bonded ion‐radicals, and ylid‐cation‐radical complexes. The hydrogen‐bonded complexes are substantially more stable than the classical aminoketyl structures. Dissociations of the peptide N? C_α bonds in aminoketyl cation‐radicals are 18–47 kJ mol^?1 exothermic and require low activation energies to produce ion‐radical complexes as stable intermediates. Loss of the side‐chain benzyl group is calculated to be 44 kJ mol^?1 endothermic and requires 68 kJ mol^?1 activation energy. Rice‐Ramsperger‐Kassel‐Marcus (RRKM) and transition‐state theory (TST) calculations of unimolecular rate constants predict fast preferential N? C_α bond cleavage resulting in isomerization to ion‐molecule complexes, while dissociation of the C_α? CH₂C₆H₅ bond is much slower. Because of the very low activation energies, the peptide bond dissociations are predicted to be fast in peptide cation‐radicals that have thermal (298 K) energies and thus behave ergodically. Copyright © 2003 John Wiley & Sons, Ltd.     

水催化2个酯分子相互转化反应的理论研究

从印楝植物内生真菌Phomopsis sp.培养液中分离得到的4-acetoxymultiplolide(1)和1-acetoxymultiplo-lide(2)在室温及水存在下能够相互转化. 提出二者相互转化最可能的4个途径(机理A~D). 在B3LYP/6-311+G(d,p)水平进行气相条件的优化, 结果表明, 无水催化的机理A中TS1和TS2的活化能均显著大于120 kJ/mol, 2个分子水催化的机理D中TS1和TS2的活化能则显著降低. 计算结果显示水的溶剂化效应能进一步降低机理D中TS1和TS2的活化能. 在MP2/6-311++G(2d,2p)//B3LYP/6-311+G(d,p)水平计算了单点能, 得到在水相时机理D中TS1和TS2的活化能分别为106.24和107.37 kJ/mol. 因此, 机理D是化合物1 和2在室温下及水存在时相互转化最可能的途径, 该途径是一种特殊的水催化分子内酯的醇解反应, 也是一种经典的亲核加成反应, 通过一种新的叔醇中间体实现.     

A theoretical study on the mechanism of the addition reaction between carbene and epoxyethane

The mechanism of addition reaction between carbene and epoxyethane has been investigated employing the MP2 and B3LYP/6-311+G* levels of theory. Geometry optimization, vibrational analysis, and energy property for the involved stationary points on the potential energy surface have been calculated. Based on the calculated results at the MP2/6-311+G* level of theory, it can be predicted that there are two reaction mechanisms (1) and (2). In the first reaction carbene attacks the atom O of epoxyethane to form an intermediate 1a (IM1a), which is a barrier-free exothermic reaction. Then, IM1a can isomerize to IM1b via a transition state 1a (TS1a), where the potential barrier is 48.6 kJ/mol. Subsequently, IM1b isomerizes to a product epoxypropane (Pro1) via TS1b with a potential barrier of 14.2 kJ/mol. In the second carbene attacks the atom C of epoxyethane firstly to form IM2 via TS2a. Then IM2 isomerizes to a product allyl alcohol (Pro2) via TS2b with a potential barrier of 101.6 kJ/mol. Correspondingly, the reaction energies for the reactions (1) and (2) are −448.4 and −501.6 kJ/mol, respectively. Additionally, the orbital interactions are also discussed for the leading intermediate. The results based on the B3LYP/6-311+G* level of theory are paralleled to those on the MP2/6-311+G* level of theory. Furthermore, the halogen and methyl substituent effects of H₂C: on the two reaction mechanisms have been investigated. The calculated results indicate that the introductions of halogen or methyl make the addition reaction difficult to proceed.