Biomolecular Imaging with a C60-SIMS/MALDI Dual Ion Source Hybrid Mass Spectrometer: Instrumentation,Matrix Enhancement,and Single Cell Analysis

We describe a hybrid MALDI/C₆₀-SIMS Q-TOF mass spectrometer and corresponding sample preparation protocols to image intact biomolecules and their fragments in mammalian spinal cord, individual invertebrate neurons, and cultured neuronal networks. A lateral spatial resolution of 10 μm was demonstrated, with further improvement feasible to 1 μm, sufficient to resolve cell outgrowth and interconnections in neuronal networks. The high mass resolution (>13,000 FWHM) and tandem mass spectrometry capability of this hybrid instrument enabled the confident identification of cellular metabolites. Sublimation of a suitable matrix, 2,5-dihydroxybenzoic acid, significantly enhanced the ion signal intensity for intact glycerophospholipid ions from mammalian nervous tissue, facilitating the acquisition of high-quality ion images for low-abundance biomolecules. These results illustrate that the combination of C₆₀-SIMS and MALDI mass spectrometry offers particular benefits for studies that require the imaging of intact biomolecules with high spatial and mass resolution, such as investigations of single cells, subcellular organelles, and communities of cells. Graphical Abstract

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Need for database extension for reliable identification of bacteria from extreme environments using MALDI TOF mass spectrometry

The ability of MALDI TOF MS (matrix-assisted laser desorption ionisation time-of-flight mass spectrometry) to identify cultivable microflora from two waste disposal sites from non-ferrous metal industry was analysed. Despite the harsh conditions (extreme pH values and heavy metal content in red mud disposal site from aluminium production or high heavy metal content in nickel sludge), relatively high numbers of bacteria were recovered. In both environments, the bacterial community was dominated by Gram-positive bacteria, especially by actinobacteria. High-quality MALDI TOF mass spectra were obtained but most of the bacteria isolates could be not identified using MALDI Biotyper software. The overall identification rate was lower than 20 %; in two of the environments tested identification rates were lower than 10 %. As a dominant bacterial species, Microbacterium spp. in drainage water from an aluminium red mud disposal site near ?iar nad Hronom, Bacillus spp. in red mud samples from the same site, and Arthrobacter spp. from nickel smelter sludge near Sereï were identified by a combination of the Biolog system and 16S rRNA sequence analysis. As the primary focus of the MALDI TOF MS-based methodology is directed towards medically important bacteria, reference database spectra expansion and refinement are needed to improve the ability of MALDI TOF MS to identify environmental bacteria, especially those from extreme environments.     

Facile formation of stimuli-responsive,fluorescent and magnetic nanoparticles based on cellulose stearoyl ester via nanoprecipitation

In comparison to stimuli-responsive, multi-functional nanoparticles (NPs) from synthetic polymers, such NPs based on sustainable, naturally occurring polysaccharides are still scarce. In the present study, stable stimuli-responsive, fluorescent and magnetic NPs were fabricated using cellulose stearoyl esters (CSEs) consisting of cellulose and stearoyl groups. The multifunctional NPs with the average diameters between 80 and 250 nm were obtained after facile nanoprecipitation using CSE solutions containing Fe₃O₄-NPs. Using the aqueous solution of fluorescent rhodamine B as precipitant, NPs with rhodamine B on NP surface were obtained. Rhodamine B could be released depending on the temperature. In comparison, stearoylaminoethyl rhodamine B can be encapsulated in CSE-NPs, which renders obtained NPs reversible fluorescence in response to UV illumination and heat treatment.     

Impact of PS/SiO2 morphologies on the SERS activity of PS/SiO2/Ag nanocomposite particles

To understand the relationship between the morphology of carboxyl-functionalized polystyrene/silica (PS/SiO₂) nanocomposite microspheres and the surface-enhanced Raman scattering (SERS) performance of PS/SiO₂/Ag nanocomposite particles, core-shell and raspberry-like PS/SiO₂ composite microspheres were used as templates to prepare PS/SiO₂/Ag nanocomposite particles. The core-shell and raspberry-like structured PS/SiO₂ templates were prepared via in situ sol-gel reaction by hydrolysis tetraethyl orthosilicate (TEOS) in alkali solution. Silver nanoparticles (10–50 nm) were loaded on the PS/SiO₂ templates’ surface by chemical reduction. The morphology and structure of the PS/SiO₂/Ag particles were characterized by TEM, SEM, X-ray diffraction (XRD), and ultraviolet-visible (UV-vis) spectroscopy. Rhodamine 6G (R6G) was selected as a model chemical to study the enhancement performance of substrate constructed by PS/SiO₂/Ag nanocomposite. Results indicated that the PS/SiO₂/Ag nanocomposite prepared based on the core-shell templates showed higher SERS activity. The beneficial effect was associated with a lower specific area of core-shell structure and the larger average diameter of nanosilvers than that of the raspberry-like templates.     

Heat of reaction and curing of epoxy resin

The heat of reaction and kinetics of curing of diglycidyl ether of bisphenol-A (DGEBA) type of epoxy resin with catalytic amounts of ethylmethylimidazole (EMI) have been studied by differential power-compensated calorimetry as a part of the program for the study of process monitoring for composite materials. The results were compared with those from 1∶1 and 1∶2 molar mixtures of DGEBA and EMI. A method of determination of heat of reaction from dynamic thermoanalytical instruments was given according to basic thermodynamic principles. The complicated mechanism, possibly involving initial ionic formation, has also been observed in other measurements, such as by time-domain dielectric spectroscopy. The behavior of commercially available DGEBA resin versus purified monomeric DGEBA were compared. The melting point of purified monomeric DGEBA crystals is 41.4 °C with a heat of fusion of 81 J/g. The melt of DGEBA is difficult to crystallize upon cooling. The glass transition of purified DGEBA monomer occurs around ?22 °C with aΔC _p of 0.60 J/K/g.     

Structural and thermal properties of HDPE/n-AlN polymer nanocomposites

High-density polyethylene (HDPE) containing various volume fractions (0–20 vol%) of aluminum nitride nanoparticles (n-AlN) is prepared by melt mixing. Structural and morphological characterizations of the prepared composites are carried out by X-ray diffraction (XRD), high-resolution transmission electron microscopy (HR-TEM), and atomic force microscopy (AFM). Thermal stability and degradation kinetics of HDPE/AlN (nano) composites are investigated by Thermogravimetric analysis (TG). HR-TEM micrographs confirm fairly uniform dispersion of AlN nanoparticles, as well as the existence of long interconnected chain-like aggregates. AFM images also confirm homogeneous dispersion of n-AlN in the polymer matrix. Roughness analysis from the AFM data indicates the presence of substantial undulation from the mean surface level. Thermogravimetric data indicate small improvement in the thermal stability of the composites. Kinetic parameters, viz., the activation energy (E _a), frequency factor (A), and reaction order (n) are estimated using the isoconversional methods of Kissinger, Flynn–Wall–Ozawa (FWO), KAS, and Friedman. Activation energies (E _a) calculated by the above four models display nearly similar features and are enhanced by the presence of AlN nanoparticles. Kinetics of degradation of HDPE-AlN (nano) composites follows a first-order reaction.     

Thermal decomposition of polymethylmethacrylate synthesized with anionic catalysts

TG and DTA data are used to show that the thermal decomposition of polymethylmethacrylate (PMMA) synthesized with anionic catalysts depends on the nature of the catalyst. It is found that the thermal stability of PMMA obtained by using anionic amide catalysts is higher than that of radical PMMA and of PMMA obtained with other anionic catalysts, and depends on the temperature of polymerization and on the molecular weight of the polymer.     

SDS 800 — The new data system for quantitative depth profiling of inhomogeneous samples by SIMS

More than 13 years of SIMS application field experience of numerous users of the ATOMIKA Ionmicroprobes have been the basis for the new SIMS Data System SDS 800. The hardware and software concept of the SDS 800, therefore, pays special attention to the following requirements:

1. Convenient set-up, modification and re-use of the measuring parameter sets for easy, time-saving operation.
2. Individual parameter selection from the very broad range of SIMS measuring parameters for optimum SIMS data quality.
3. Multitasking operation for simultaneous handling of SIMS measurement, data processing, data output and of auxiliary techniques.
4. Simultaneous depth profile/ion image acquisition and processing to enhance data quality and to validate data interpretation.
5. User-friendly data processing and output.

     

Polyoxotungstate nanoclusters supported on silica as an efficient solid-phase microextraction fiber of polycyclic aromatic hydrocarbons

A highly porous silica-supported tungstophosphoric acid (PW) nanocluster was prepared for use in solid-phase microextraction (SPME) of polycyclic aromatic hydrocarbons (PAHs). The PWs represent a class of discrete transition metal-oxide nanoclusters and their structures resemble discrete fragments of metal-oxide structures of definite size and shape. Transition metal-oxide nanoclusters display large structural diversity, and their monodisperse sizes can be tuned from several Ångstroms up to 10 nm. The highly porous silica-supported tungstophosphoric acid nanocluster material is found to be capable of efficiently extracting PAHs from aqueous sample solutions. The nanomaterial was immobilized on a stainless steel wire for fabrication of the SPME fiber. Following thermal desorption, the PAHs were quantified by GC-MS. Analytical merits include limits of detection that range from 0.02 to 0.1 pg mL^?1 and a dynamic range as wide as from 0.001 to 100 ng mL^?1. Under optimum conditions, the repeatability for one fiber (n?=?3), expressed as the relative standard deviation, is between 4.3 % and 8.6 %. The method is simple, rapid, and inexpensive. The thermal stability of the fiber and the high relative recovery make this method superior to conventional methods of extraction.

The highly porous silica-supported tungstophosphoric acid nanocluster material is found to be capable of efficiently extracting PAHs from aqueous sample solutions. The prepared nanomaterial was immobilized onto a stainless steel wire for fabrication of the SPME fiber. Following thermal desorption, the PAHs were quantified by GC-MS.     

On synthesis of Fe2SiO4/SiO2 and Fe2O3/SiO2 composites through sol–gel and solid-state reactions

Major processing factors in forming Fe₂SiO₄/SiO₂ and Fe₂O₃/SiO₂ powders via sol–gel synthesis followed by solid-state reactions are investigated. The results clearly indicate that the chemical compositions of the precursors, the ratio of the precursors, the nature of the catalyst used, and the gas atmosphere during solid-state reactions can all affect the outcome of the reaction product(s). The formation of Fe₂SiO₄/SiO₂ is enhanced by using the precursor iron(III) acetylacetonate as the Fe source with the precursor ratio of iron(III) acetylacetonate to tetraethyl orthosilicate being 1:1 and the addition of formic acid. Otherwise, crystalline Fe and Fe₃C are formed in place of Fe₂SiO₄. By altering the gas atmosphere during solid-state reactions from argon to oxygen, the reaction products change from Fe₂SiO₄/SiO₂ to Fe₂O₃/SiO₂. All of the observed phenomena can be rationalized via the degree of mixing of the Fe–O and Si–O domains at the molecular level in the gel network during sol–gel reactions and the presence of a reducing or oxidizing atmosphere during the solid-state reaction.     

Fluorescent protein-based FRET sensor for intracellular monitoring of redox status in bacteria at single cell level

Monitoring of intracellular redox status in a bacterial cell provides vital information about the physiological status of the cell, which can be exploited in several applications such as metabolic engineering and computational modeling. Fluorescent protein-based genetically encoded sensors can be used to monitor intracellular oxidation/reduction status. This study reports the development of a redox sensor for intracellular measurements using fluorescent protein pairs and the phenomenon of Förster resonance energy transfer (FRET). For the development of the sensor, fluorescent proteins Citrine and Cerulean were genetically modified to carry reactive cysteine residues on the protein surface close to the chromophore and a constructed FRET pair was fused using a biotinylation domain as a linker. In oxidized state, the FRET pairs are in close proximity by labile disulfide bond formation resulting in higher FRET efficiency. In reducing environment, the FRET is diminished due to the increased distance between FRET pairs providing large dynamic measurement range to the sensor. Intracellular studies in Escherichia coli mutants revealed the capability of the sensor in detecting real-time redox variations at single cell level. The results were validated by intensity based and time resolved measurements. The functional immobilization of the fluorescent protein-based FRET sensor at solid surfaces for in vitro applications was also demonstrated. Graphical Abstract

Schematic representation of FRET-based redox sensor     

Organelle sensor: amperometric determination of nadh by immobilized mitochondrial electron transport particles

A new sensor for NADH was developed by making use of an immobilized subcellular organelle. Mitochondria was used as a model system for assembling an organelle sensor. Mitochondrial electron transport particles (ETP) were prepared from beef heart muscle and entrapped in the membrane formed of agar gel. The membrane-bound ETP was found capable of NADH oxidation: $$NADH + \tfrac{1}{2}O_2 + H^ + \xrightarrow{{ETP}}NAD^ - + H_2 O$$ The membrane was tightly attached to the surface of an oxygen electrode capable of amperometric detection of O2. The sensor responded to NADH in solution with a resulting electric output. The response was enhanced by the addition of 2,4-dinitrophenol (DNP). NADH was determined in the concentration range 1–300 µM. NADH was alternatively determined for 2 weeks without replacing the ETP-bound membrane.     

The role of octanol in the extraction of hydrochloric acid by trilaurylamine dissolved in benzene

The extraction of hydrochloric acid by trilaurylamine (TLA) dissolved in benzene was studied in the presence and in absence of n-octanol. The extraction of HCl was found to be enhanced by the addition of octanoi to the organic phase. In order to explain this effect by means of the law of mass action, the systems TLA-HCL-benzene and n-octanol-HCl-benzene as well as TLA-octanol-benzene were also studied. It was found that TLA reacts with octanol to form a complex, TLAROH, while the octanol itself associates in benzene to form dimers and tetramers, although it does not extract HCl alone from the dilute solutions used in the present study. The enhancement of the extraction of HCl by TLA upon the addition of n-octanol could be described by the formation of the species TLA·ROH·HCl and its stability constant was determined.     

Effect of Cl substituent in the aromatic tetracycline ring on its reactivity with solvated electrons

Decomposition yields of tetracycline hydrochloride /TC.HCl/ and chlorotetracycline hydrochloride /ClTC?HCl/ in methanol solution saturated with Ar or N₂O were determined. Rate constants of the reaction e_s with some antibiotics were obtained: $$\begin{gathered} k/e_s^ - + ClTC \cdot HCl/ = 2 \cdot 49 \times 10^8 dm^3 \cdot mole^{ - 1} \cdot s^{ - 1} ; \hfill \\ k/e_s^ - + TC \cdot HCl/ = 2 \cdot 86 \times 10^8 dm^3 \cdot mole^{ - 1} \cdot s^{ - 1} \cdot \hfill \\ \end{gathered} $$ On the basis of the diffence between decomposition yields: ΔG=G_?TC.HCl^?G?ClTC.HCl′ 7-C?Cl group decomposition yield and the rate constant $$k/e_s^ - + Cl - C - 7/ = 7 \cdot 94 \times 10^8 dm^3 \cdot mole^{ - 1} \cdot s^{ - 1} $$ were determined. It was demonstrated by¹H NMR that the radical formed by degradation of 7-C?Cl group is recombined with the H atoms leading to ClTC.HCl being converted into tetracycline hydrochloride /TC.HCl/.     

Angular dependent post-collision interaction in auger processes

We have reformulated the theory of post-collision interaction (PCI) for Auger-decay following inner-shell photoionisation in order to take the time into account with the Auger-electron need to overtake the slow electron. The energy-shift of the Auger-electron due to PCI is calculated by solving in a reasonable approximation the classical equation of motion for the Auger electron. In contrast to the theory of Russek and Mehlhorn we derive analytical expressions for the transition amplitude, the line shape and the line shift of the Auger-electrons. If in our model the Auger electron and the slow electron are treated uncorrelated in direction our analytical expressions agree well with the numerical results of Russek and Mehlhorn. However if we account for directional electron-electron correlations, we show that deviations from the theory of Russek and Mehlhorn are to be expected. The possibility of detecting these deviations is discussed.     

Largely enhanced molecular orientation and mechanical property of injection-molded high-density polyethylene parts via the synergistic effect of polyamide 6 in situ microfibrillar and intense shear flow

The high-density polyethylene (HDPE)/polyamide 6 (PA6) in situ microfibrillar composites (HAM-C) were fabricated by the “extrusion-hot stretch-quenching” technique, in which PA6 microfibrillar had diameters lying in the range 0.55 to 1.05 μm. Then the HAM-C and pure HDPE were processed by multi-melt multi-injection molding (MMMIM). The effect of PA6 in situ microfibrillar and secondary melt penetration on the crystalline morphologies and mechanical properties was investigated using a variety of characterization techniques including differential scanning calorimetry (DSC), rheological experiments, scanning electron microscopy (SEM), synchrotron two-dimensional small-angle X-ray scattering (SAXS), and tensile testing. It was found that PA6 microfibrillar not only acted as a heterogeneous nucleation agent, but also prolonged the relaxation time of HDPE matrix by suppressing the mobility of HDPE molecular chains. It was revealed, from observing the morphologies, that the presence of PA6 microfibrillar not only facilitated the formation of transcrystalline superstructures on its surface, but also induced much more oriented crystals nearby as a result of the amplified local shear field. Furthermore, SAXS results confirmed that the degree of orientation of the injection-molded HAM-C part (HAM-M) was largely enhanced. Finally, the tensile testing showed that the tensile strength and Young’s modulus of the HAM-M sample were enhanced by 38.8 and 54.6 %, respectively, when compared with pure HDPE parts. This work provides a promising way to tailor the crystalline structure of the injection-molded parts.     

An enzyme immunosensor for IgG

An enzyme immunosensor has been developed for assaying human immunoglobulin G (IgG). The sensor is composed of an oxygen sensoring system and an antibody-binding membrane. The assay procedure involves the competitive immunochemical reaction of the membrane-bound antibody with nonlabeled and catalase-labeled IgG and the electrochemical determination of membrane-bound catalase activity. The analytical result is directly displayed by the output current of the sensor. The sensor exhibited an excellent performance in monitoring specifically human IgG.     

Quantitative characterization by asymmetrical flow field-flow fractionation of IgG thermal aggregation with and without polymer protective agents

Complexes formed between poly(acrylates) and polyclonal immunoglobulin G (IgG) in its native conformation and after heat stress were characterized using asymmetric flow field-flow fractionation (AF4) coupled with on-line UV-Vis spectroscopy and multi-angle light-scattering detection (MALS). Mixtures of IgG and poly(acrylates) of increasing structural complexity, sodium poly(acrylate) (PAA), a sodium poly(acrylate) bearing at random 3 mol % n-octadecyl groups, and a random copolymer of sodium acrylate (35 mol %), N-n-octylacrylamide (25 mol %) and N-isopropylacrylamide (40 mol %), were fractionated in a sodium phosphate buffer (0.02 M, pH 6.8) in the presence, or not, of 0.1 M NaCl. The AF4 protocol developed allowed the fractionation of solutions containing free poly(acrylates), native IgG monomer and dimer, poly(acrylates)/IgG complexes made up of one IgG molecule and a few polymer chains, and/or larger poly(acrylates)/IgG aggregates. The molar mass and recovery of the soluble analytes were obtained for mixed solutions of poly(acrylates) and native IgG and for the same solutions incubated at 65 °C for 10 min. From the combined AF4 results, we concluded that in solutions of low ionic strength, the presence of PAA increased the recovery ratio of IgG after thermal stress because of the formation of electrostatically-driven PAA/IgG complexes, but PAA had no protective effect in the presence of 0.1 M NaCl. Poly(acrylates) bearing hydrophobic groups significantly increased IgG recovery after stress, independently of NaCl concentration, because of the synergistic effect of hydrophobic and electrostatic interactions. The AF4 results corroborate conclusions drawn from a previous study combining four analytical techniques. This study demonstrates that AF4 is an efficient tool for the analysis of protein formulations subjected to stress, an important achievement given the anticipated important role of proteins in near-future human therapies. ?      

Isolation and properties of transferrin messenger RNA from rat liver

Highly purified transferrin mRNA characterized by electrophoretic and sedimentational homogeneity has been obtained from rat liver, with a sedimentation coefficient of 20S and a molecular weight of 0.86 MD. In a system consisting of a lysate of rabbit reticulocytes the Tf-mRNA programs the synthesis of an immunoreactive precursor of transferrin with a molecular weight of 82 kD. More than 50% of the nucleotide sequence of Tf-mRNA is present in the paired state.