Development of a series of cross-linking agents that effectively stabilize alpha-helical structures in various short peptides

A series of cross-linking agents of varying rigidity and length were designed to stabilize helical structures in short peptides and were then synthesized. The sequences of the short peptides employed in this study each include two X residues (X=Dap, Dab, Orn, and Lys) at the i/i+4, i/i+7, or i/i+11 positions to provide the sites for cross-linking. These peptides were subjected to reaction with the synthesized cross-linking agents, and the helical content of the resulting cross-linked peptides were analyzed in detail by circular dichroism. For each of the peptide classes we found combinations with the cross-linking agents suitable for the construction of stable helical structures up to >95 % helicity at 5 degrees C. Our method could also be applied to biologically related sequences seen in native proteins such as Rev.     

Facile fabrication of ZnO/N‐doped helical carbon nanotubes composites with enhanced photocatalytic activity toward organic pollutant degradation

Novel ZnO/N‐doped helical carbon nanotubes (ZnO/N‐HCNTs) composites were successfully synthesized via a facile chemical precipitation approach at room temperature. The sample was well characterized by X‐ray diffraction (XRD), energy dispersive X‐ray spectroscopy (EDS), transmission electron microscopy (TEM) and ultraviolet–visible diffuse reflectance spectroscopy (UV–vis DRS). The photocatalytic activity was evaluated in the degradation of methylene blue (MB) aqueous solution under UV light irradiation. It is found that ZnO nanoparticles were highly and uniformly anchored on the surface and inner tubes of the N‐HCNTs with size of about 5 nm, and significantly enhanced the photocatalytic activity compared to pure ZnO. The enhanced photocatalytic activity of ZnO/N‐HCNTs composites can be ascribed to the integrative synergistic effect of effective interfacial hybridization between N‐HCNTs and ZnO nanoparticles and the prolonged lifetime of photogenerated electron–hole pairs. Moreover, the ZnO/N‐HCNTs could be easily recycled without any obvious decrease in photocatalytic activity and could be promote their application in the area of environmental remediation.     

手性有机-无机杂化氧化硅纳米管的制备

依照文献以L-苯甘氨酸为手性源合成了一个手性阴离子两亲小分子化合物.利用圆二色谱表征了该化合物水中的自组装行为.通过溶胶-凝胶复制法,以该手性两亲小分子化合物和结构助剂的组装体为模板制备了右手螺旋有机-无机杂化氧化硅纳米管.圆二色谱表征结果表明,4,4′-亚联苯基氧化硅中的联苯基团呈手性堆积.     

Spontaneous coating of carbon nanotubes with an ultrathin polypyrrole layer

A novel protocol for precisely coating individual multiwall carbon nanotubes (MWCNTs) with an ultrathin layer of polypyrrole was developed. The nanocoated MWCNTs were successfully prepared by in situ chemical deposition of polypyrrole in an aqueous suspension of MWCNTs. The coating layer was very uniform and the thickness of the layer was determined by controlling the monomer concentration used, which gave nanometer precision. The products were characterized by transmission electron microscopy, scanning electron microscopy, Raman spectroscopy, X-ray photoelectron spectroscopy, electron energy loss spectroscopy, and conductivity and current-voltage measurements. The ultrathin polypyrrole layer could electrically insulate individual MWCNTs.     

Self-assembly of amylin(20-29) amide-bond derivatives into helical ribbons and peptide nanotubes rather than fibrils

Uncontrolled aggregation of proteins or polypeptides can be detrimental for normal cellular processes in healthy organisms. Proteins or polypeptides that form these amyloid deposits differ in their primary sequence but share a common structural motif: the (anti)parallel beta sheet. A well-accepted approach for interfering with beta-sheet formation is the design of soluble beta-sheet peptides to disrupt the hydrogen-bonding network; this ultimately leads to the disassembly of the aggregates or fibrils. Here, we describe the synthesis, spectroscopic analysis, and aggregation behavior, imaged by electron microscopy, of several backbone-modified amylin(20-29) derivatives. It was found that these amylin derivatives were not able to form fibrils and to some extent were able to inhibit fibril growth of native amylin(20-29). However, two of the amylin peptides were able to form large supramolecular assemblies, like helical ribbons and peptide nanotubes, in which beta-sheet formation was clearly absent. This was quite unexpected since these peptides have been designed as soluble beta-sheet breakers for disrupting the characteristic hydrogen-bonding network of (anti)parallel beta sheets. The increased hydrophobicity and the presence of essential amino acid side chains in the newly designed amylin(20-29) derivatives were found to be the driving force for self-assembly into helical ribbons and peptide nanotubes. This example of controlled and desired peptide aggregation may be a strong impetus for research on bionanomaterials in which special shapes and assemblies are the focus of interest.     

A bridge between pillared-layer and helical structures: a series of three-dimensional pillared coordination polymers with multiform helical chains

Rational self-assembly of a long V-shaped 3,3',4,4'-benzophenonetetracarboxylate (bptc) ligand and metal salts in the presence of linear bidentate ligand yield a series of novel pillared helical-layer complexes, namely, [Cu2(bptc)(bpy)2] (1), [M3(Hbptc)2(bpy)3(H2O)4].2 H2O (M = Fe(2) and Ni(3)), [Co2(bptc)(bpy)(H2O)].0.5 bpy (4), [Cd2(bptc)(bpy)(H2O)2].H2O (5), [Mn2(bptc)(bpy)1.5(H2O)3] (6) and [M2(bptc)(bpy)0.5(H2O)5].0.5 bpy (M = Mn(7), Mg(8) and Co(9), bpy=4,4'-bipyridine). Their structures were determined by single-crystal X-ray diffraction analyses and further characterized by elemental analyses, IR spectra, and thermogravimetric (TG) analyses. The structure of 1 consists of two types of chiral layers, one left-handed and the other right-handed, which are connected by bpy pillars to generate a novel 3D open framework featuring four distinct helical chains. Compounds 2 and 3 are isostructural and feature 3D structures formed from the interconnection of arm-shaped helical layers with bpy pillars. Compound 4 is a pillared helical double-layer complex containing four different types of helices, among which the nine-fold interwoven helices constructed from triple-stranded helical motifs are unprecedented. Compound 5 exhibits a novel 3D covalent framework which features nanosized tubular channels. These channels are built from helical layers pillared by bptc ligands. The structure of 6 is constructed from {Mn(bptc)(H2O)}n2n- layers, which consist of left- and right-handed helical chains, pillared by [Mn2(bpy)3(H2O)4]4+ complexes into a 3D framework. To the best of our knowledge, compounds 1-6 are the first examples of pillared helical-layer coordination polymers. Compounds 7-9 are isostructural and exhibit interesting 2D helical double-layer structures, which are constructed from {M(bptc)(H2O)2}n2n- ribbons cross-linked by [M2(bpy)(H2O)6]4+ complexes. Furthermore, the 3D supramolecular structures of 7-9 are similar to the 3D structure of 6, and the 2D structure of 7 can be transformed into the 3D structure of 6 at higher reaction temperature. By inspection of the structures of 1-9, it is believed that the V-shaped bptc ligand and V-shaped phthalic group of the bptc ligand are important for the formation of the helical structures. The magnetic behavior of compounds 1, 2, 4, 6, and 9 was studied and indicated the existence of antiferromagnetic interactions. Moreover, compound 5 shows intense photoluminescence at room temperature.     

Evolution from lyotropic liquid crystal to helical fibrous organogel of an achiral fluorescent twin-tapered bi-1,3,4-oxadiazole derivative

We report an unprecedented hierarchical self‐assembly of an achiral twin‐tapered bi‐1,3,4‐oxadiazole derivative (2,2‐bis(3,4,5‐trioctanoxyphenyl)‐bi‐1,3,4‐oxadiazole, BOXD‐T8). This molecule can form a layer‐structured lyotropic liquid crystal and further forms a helical fibrous organogel in DMF at concentrations above 0.6 wt %. The self‐assembly process of BOXD‐T8 in DMF is accompanied by a change in its fluorescence. The pitches of the helical fibers are non‐uniform, and both left‐ and right‐handed helical fibers are observed in equal quantities. Intermolecular π–π interactions between aromatic segments have been demonstrated to be the driving force for aggregate formation. This helical structure of BOXD‐T8 is dependent on the solvent, concentration, and the layer‐structured intermediate liquid‐crystalline state.     

NMR measurements of gaseous sulfur hexafluoride (SF6) to probe the cross-linking of EPDM rubber

The effects of embedding gaseous SF6 into EPDM rubber were investigated using NMR methods. It was found that observed sorption and desorption processes follow the behavior of the dual mode sorption model. A strong correlation was found between EPDM cross-linking and transversal relaxation time of embedded SF6. EPDM samples with different cross-link densities, preliminarily determined by 1H transversal relaxation using the Gotlib model and Litvinov's method, were investigated using embedded SF6. The sensitivity of the 19F transversal relaxation rate of SF6 to the EPDM cross-link density variation was found to be at least 10 times higher than for 1H in the polymer chain. First experiments on probing the swelling effects in EPDM due to its contact with polar liquids have been performed.     

Identification of radiation-induced cross-linking between thymine and tryptophan by electrospray ionization-mass spectrometry

Upon exposure to ionizing radiation, DNA undergoes a variety of modifications including the production of a covalent bond between the nucleobase thymine and aromatic amino acids. In this work, electrospray ionization-mass spectrometry(ESI-MS) was used to identify the gamma radiation-induced covalent cross-linking of model peptides (sequence YPPW and pYPPW) with the nucleobase thymine. Tandem electrospray ionization-mass spectrometry (ESI-MSn) was employed to investigate the cross-linking sites. The results showed that irrespective of whether tyrosine was phosphorylated or not, the nucleobase thymine was cross-linked with the tryptophan residue. Possible cross-linking mechanisms are proposed by investigating the related mass peaks.     

Folding of coordination polymers into double-stranded helical organization

Self-assembling coordination polymers based on Pd II and Cu II metal ions were prepared from complexation of a bent-shaped bispyridine ligand and a corresponding transition metal. These coordination polymers were observed to self-assemble into supramolecular structures that differ significantly depending on the coordination geometry of the metal center. The polymer based on Pd II self-assembles into a layer structure formed by bridging bispyridine ligands connected in a trans-position of the square-planar coordination geometry of metal center. In contrast, the polymer based on Cu II adopts a double-helical conformation with regular grooves, driven by interstranded, copper-chloride dimeric interaction. The double-stranded helical organization is further confirmed by structure optimization from density functional theory with aromatic framework, showing that the optimized double-helical structure is energetically favorable and consistent with the experimental results. These results demonstrate that weak metal-ligand bridging interactions can provide a useful strategy to construct stable double-stranded helical nanotubes.