Manganese(II) complexes of 3,6,9-trioxaundecanedioic acid (3,6,9-tddaH2): X-ray crystal structures of [Mn(3,6,9-tdda) (H2O)2]·2H2O and {[Mn(3,6,9-tdda)(phen)2·3H2O]·EtOH}n

3,6,9-trioxaundecanedioic acid (3,6,9-tddaH₂) reacts with Mn(CH₃CO₂)₂·4H₂O in ethanol to give [Mn(3,6,9-tdda)]·H₂O (1). Recrystallization of 1 from methanol gives crystals of [Mn(3,6,9-tdda) (H₂O)₂]·2H₂O (2). Complex 1 reacts with an ethanolic solution of 1,10-phenanthroline (phen) to give {[Mn(3,6,9-tdda)(phen)₂]·3H₂O·EtOH}_n (3). All of the complexes are extremely water soluble. Complexes 2 and 3 were structurally characterised. The manganese(II) ion in 2 is seven coordinate, with an approximately pentagonal bipyramidal O₇ coordination sphere. The axial donors are water molecules and the pentagonal plane is occupied by the diacid, acting as a pentadentate ligand through the three ethereal oxygens and one oxygen atom from each of the carboxylate functions. In complex 3 the manganese(II) ion is six-coordinate, being bound to two bidentate phenanthroline ligands and to the carboxylate oxygen atoms from two symmetry related diacids which are coordinated in a cis fashion. The structure consists of polymeric chains, with diacid ligands bridging the manganese ions. There is π-π stacking of pairs of phenanthroline ligands on adjacent chains, running along both the z and y directions.     

Synthesis,crystal structure and magnetic properties of a nickel(II) complex with pyridine-substituted nitronyl nitroxide radicals

The complex [Ni(NIT2Py)(PDA)(H₂O)]·(MeOH)(H₂O) [NIT2Py = 2-(2-pyridyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide; PDA = 2,6-pyridine dicarboxylic acid] has been prepared and structurally characterized. The Ni^II ion is in a distorted octahedral environment: one nitrogen atom and one oxygen atom from the NIT2Py, one nitrogen atom from the PDA and one oxygen atom from the H₂O in the basal plane; two oxygen atoms from the PDA in the axial position. The units of [Ni(NIT2Py)(PDA)(H₂O)] were connected as a one dimension chain by intermolecular hydrogen bonds. The complex exhibits intramolecular antiferromagnetic interactions between the Ni^II ion and the NIT2Py.     

A B3LYP study on the mechanism of second H2O formation in a fully reduced cytochrome c oxidase

The mechanism of second H₂O formation in fully reduced cytochrome c oxidase is examined by sequential additions of one electron and two protons to a [Fe(IV)O, Cu(II)] compound II, which is the final intermediate of first H₂O formation. It is found that the addition of one electron induces the concerted proton–electron transfer from the Cu_B to FeO moieties with no energy barriers. The H₂O molecule coordinating to the Cu atom is a key molecule for the proton transfer from the Cu_B moiety to the FeO and/or Fe–OH moieties. It is also found from the results in previous and the present works that one can realize the reduction process of dioxygen by fully reduced cytochrome c oxidase.     

2D Cu(I) and 3D mixed-valence Cu(I)/Cu(II) coordination polymers: Synthesis and structural characterization of [CuCl(pyz-H)2]·2H2O and [Cu2Cl2(pyz)(H2O)]·H2O (pyz-H = pyrazinic acid)

Two new coordination polymers of copper(I) chloride and pyrazinic acid (pyz-H), namely [CuCl(pyz-H)₂]·2H₂O (1) and [Cu₂Cl₂(pyz)(H₂O)]·H₂O (2) have been prepared and characterized by spectroscopic, magnetic and crystallographic methods. The overall physical measurements suggest that 1 is diamagnetic and contains monodentate N-pyrazinic acid, whereas 2 is paramagnetic and contains tridentate N,N′,O- chelating bridging pyrazinato anion. In the structure of 1 as elucidated by X-ray single crystal analysis, the asymmetric units [CuCl(pyz)₂] are linked together forming a zigzag chain with tetrahedral copper(I) environment. The two lattice water molecules form hydrogen bonds with the uncoordinated N atom and carboxylate group O atom of pyz-H molecules. The Cu–N bond lengths are 2.009(6) Å and Cu–Cl distances are 2.337(2) Å. Complex 2 has a three-dimensional structure with the chains [Cu(I)Cu(II)(C₅H₃N₂O₂)Cl₂(H₂O)] interconnected by [Cu(I)Cl₂N] tetrahedral unit and [Cu(II)NO₂Cl₂] polyhedra. The Cu(I)–Cl and Cu(I)–N distances are 2.327(2)–2.581(2) Å and 1.988(6) Å, respectively, whereas the Cu(II)–Cl and Cu(II)–N bond lengths are 2.258(2), 2.581(2) Å, and 2.017(6) Å, respectively. Hydrogen bonds of the type O–HO are formed between lattice and coordinated water, and carboxylate oxygens of pyrazinato ligand giving rise to a three-dimensional network. The Cl⁻ anions act as bridging ligands in both complexes. The magnetic data of complex 2 have been measured from 2 to 300 K and discussed.     

Spectroscopic and magnetic properties of copper(II) complexes derived from pyridine-2-carbaldehyde thiosemicarbazone. Structures of [Cu(NO3)(C7H8N4S)(H2O)](NO3) and [{Cu(NCS)(C7H7N4S)}2]

Complexes with the formula CuX(L) (X=N₃ 1, NCO 2 and NCS 3) and [Cu(NO₃)(HL)(H₂O)](NO₃) 4, where HL=C₇H₈N₄S, (pyridine-2-carbaldehyde thiosemicarbazone), have been characterised. Single-crystal X-ray diffraction studies on compounds 3 and 4 have been carried out. The structure of compound 4 consists of monomeric distorted square pyramidal copper(II) species. The copper(II) ions are coordinated to the NNS atoms from the tridentate thiosemicarbazone ligand and one oxygen atom of a nitrate group in the equatorial position. The oxygen atom of the water molecule occupies the apical position. The structure of compound 3 consists of non-centrosymmetric {Cu₂(μ-SR)₂} entities in which the copper(II) ions exhibit five-coordinate square–pyramidal geometry. The thiosemicarbazone ligand and one nitrogen atom from the thiocyanate ion are in a basal position. The sulfur atom of the tridentate ligand acts as a bridge occupying the apical position. Structural and spectroscopic results suggest the presence of relevant σ ligand-to-metal charge transfer and metal-to-ligand π-backdonation character in these compounds. The ESR spectra of compounds 3 and 4 show rhombic symmetry. For complexes 1 and 2 the ESR spectra exhibit axial signals. Magnetic measurements on compounds 1, 2 and 3 show antiferromagnetic couplings. The susceptibility data were fitted by the Bleaney–Bowers’ equation for copper(II) dimers. The obtained J/k values are −4.22, −6.10 and −7.33 K for compounds 1, 2 and 3, respectively.     

Hydrothermal synthesis, crystal structure and characterization of [Zn(H2O)4]2 [H2As6V15O42(H2O)]·2H2O

The compound [Zn(H₂O)₄]₂[H₂As₆V₁₅O₄₂(H₂O)]·2H₂O (1) has been synthesized and characterized by elemental analysis, IR, ESR, magnetic measurement, third-order nonlinear property study and single crystal X-ray diffraction analysis. The compound 1 crystallizes in trigonal space group R3, a=b=12.0601(17) Å, c=33.970(7) Å, γ=120°, V=4278.8(12) Å³, Z=3 and R1(wR2)=0.0512 (0.1171). The crystal structure is constructed from [H₂As₆V₁₅O₄₂(H₂O)]⁴⁻ anions and [Zn(H₂O)₄]²⁺ cations linked through hydrogen bonds into a network. The [H₂As₆V₁₅O₄₂(H₂O)]⁶⁻ cluster consists of 15 VO₅ square pyramids linked by three As₂O₅ handle-like units.     

Syntheses and structural determination of nine-coordinate K3[Nd(nta)2(H2O)]·6H2O and K3[Er(nta)2(H2O)]·5H2O

The syntheses and structural determination of Nd^III and Er^III complexes with nitrilotriacetic acid (nta) were reported in this paper. Their crystal and molecular structures and compositions were determined by single-crystal X-ray structure analyses and elemental analyses, respectively. The crystal of K₃[Nd^III(nta)₂(H₂O)]·6H₂O complex belongs to monoclinic crystal system and C2/c space group. The crystal data are as follows: a=1.5490(11) nm, b=1.3028(9) nm, c=2.6237(18) nm, β=96.803(10)°, V=5.257(6) nm³, Z=8, M=763.89, D_c=1.930 g cm⁻³, μ=2.535 mm⁻¹ and F(000)=3048. The final R₁ and wR₁ are 0.0390 and 0.0703 for 4501 (I>2σ(I)) unique reflections, R₂ and wR₂ are 0.0758 and 0.0783 for all 10474 reflections, respectively. The Nd^IIIN₂O₇ part in the [Nd^III(nta)₂(H₂O)]³⁻ complex anion has a pseudo-monocapped square antiprismatic nine-coordinate structure in which the eight coordinate atoms (two N and six O) are from the two nta ligands and a water molecule coordinate to the central Nd^III ion directly. The crystal of the K₃[Er^III(nta)₂(H₂O)]·5H₂O complex also belongs to monoclinic crystal system and C2/c space group. The crystal data are as follows: a=1.5343(5) nm, b=1.2880(4) nm, c=2.6154(8) nm, b=96.033(5)°, V=5.140(3) nm³, Z=8, M=768.89, D_c=1.987 g cm⁻³, μ=3.833 mm⁻¹ and F(000)=3032. The final R₁ and wR₁ are 0.0321 and 0.0671 for 4445 (I>2σ(I)) unique reflections, R₂ and wR₂ are 0.0432 and 0.0699 for all 10207 reflections, respectively. The Er^IIIN₂O₇ part in the [Er^III(nta)₂(H₂O)]³⁻ complex anion has the same structure as Nd^IIIN₂O₇ part in which the eight coordinate atoms (two N and six O) are from the two nta ligands and a water molecule coordinate to the central Nd^III ion directly.     

Sythesis and crystal structure of a new nickel(II)-terpyridine complex: [Ni(terpy)(NO2)(ONO)(H2O)]

The compounds Ni(terpy)Cl₂ · 3H₂O and NaNO₂ react readily in aqueous solution to give the complex [Ni(terpy)(NO₂)(ONO)(H₂O)], which has been structurally characterized by an X-ray diffraction study. The hexacoordinate nickel atom bonds to three nitrogen atoms of the terpyridine ligand, to a “nitro” group, to a “nitrite” group and to a water molecule. Distortion from an octahedron to a trigonal prism, for the complex, has been evaluated. An infrared study of the complex has been carried out and shows bands of nitro and nitrite coordination. Magnetic study reveals a Curie-Weiss behavior, giving an effective magnetic moment at room temperature 3.12 B.M.     

Syntheses, crystal structures and magnetic properties of a new nitronyl nitroxide NIT2-bithph and its manganese(II) compound [Mn(hfac)2(IMHBithph)]2·(NIT2-bithph)(C6H14)

A new nitronyl nitroxide NIT2-bithph (1) and its manganese(II) compound [Mn(hfac)₂(IMHBithph)]₂·(NIT2-bithph)(C₆H₁₄) (2) (hfac = hexafluoroacetylacetonate; NIT2-bithph = 4,4,5,5-tetramethyl-2-(bithiophenal-2-yl)imidazoline-1-oxyl-3-oxide; IMHBithph = 1-hydroxy-2-bithiophenal-4,4,5,5-tetramethyl-4,5-dihydro- 1H-imidazole) have been synthesized and structurally characterized by X-ray diffraction methods. The units of compound 1 were connected as one-dimensional chain by the intermolecular hydrogen bonds which afford an intermolecular antiferromagnetic interaction between nitronyl nitroxide radicals within the chain (J = −1.89 cm⁻¹). Compound 2 resulting from the reaction of Mn(hfac)₂·2H₂O and NIT2-bithph is dinuclear and includes the reduced amidino-oxide form of NIT2-bithph, it is made up of three parts: a [Mn(hfac)₂(IMHBithph)]₂ dimer unit, an uncoordinated NIT2-bithph radical and a noncoordinated solvent molecule of hexane, the molecule of radical is hydrogen bonded to its reduced form. Two reduced IMHBithph ligands bridge the two manganese(II) ions through their amidino-oxide oxygen atoms resulting in a small intramolecular antiferromagnetic interaction between the manganese ions (J = −1.55 cm⁻¹).     

Characterization and crystal structures of copper(II), cobalt(II), and nickel(II) complexes with two kinds of piperidine carboxylic acids

Copper(II) complex with -piperidine-3-carboxylic acid ( -Hpipe-3):[Cu( -pipe-3)₂(H₂O)] and cobalt(II) and nickel(II) complexes with piperidine-4-carboxylic acid (Hpipe-4):[M(Hpipe-4)₂(H₂O)₄]Cl₂ (M: Co, Ni) have been prepared and characterized by means of IR and powder diffuse reflection spectra, thermal analysis, and magnetic susceptibility. The crystal structures of these complexes have been determined by X-ray diffraction. The crystal of [Cu( -pipe-3)₂(H₂O)] is orthorhombic with the space group Pbcn. The copper atom is in a square pyramidal geometry, ligated by two carboxylato oxygen atoms, two nitrogen atoms, and a water molecule. One molecule of this complex consists of either -piperidine-3-carboxylic acid or -piperidine-3-carboxylic acid. The crystals of [M(Hpipe-4)₂(H₂O)₄]Cl₂ are monoclinic with space group P2₁/n. In these complexes the metal atom is in an octahedral geometry ligated by two carboxylato oxygen atoms and four water molecules.     

Structural and spectroscopic properties of Hexamethylenetetramine cobalt(II) complex: [Co(NCS)2(hmt)2(H2O)2][Co(NCS)2(H2O)4] (H2O)

Synthesis, structure, spectroscopy and thermal properties of complex [Co(NCS)₂(hmt)₂(H₂O)₂][Co(NCS)₂(H₂O)₄] (H₂O) (I), assembled by hexamethylenetetramine and octahedral Co(II) metal ions, are reported. Crystal data for I: F_w 387.34, a=9.020(8), b=12.887(9), c=7.95(1) Å, =96.73(4), β=115.36(5), γ=94.16(4)°, V=820(1) Å³, Z=2, space group=P−1, T=173 K, λ(Mo-K)=0.71070 Å, ρ_calc=1.718567 g cm⁻³, μ=17.44 cm⁻¹, R=0.088, R_w=0.148. An interesting two-dimensional network is assembled via hydrogen bonds through coordinated and free water molecules. The d–d transition energy levels of Co(II) ion are determined by UV–vis spectroscopy and calculated by ligand field theory. The calculated results agree well with experiment ones.     

Synthesis, spectral properties, crystal structures and antimicrobial effects of copper(II) pyridinecarboxylate adducts with chelating ligands

The reaction of an ethanolic solution of copper(II) pyridinecarboxylates CuX₂·nH₂O (where X is nicotinate (nic) (n=0) or isonicotinate (isonic) (n=4)) with ethylenediamine (en) in a molar ratio of 1:2 lead to the isolation of solid tetragonally distorted octahedral complexes of the type [Cu(en)₂(H₂O)₂]X₂·nH₂O (n=1 for nic; n=0 for isonic). The analogous reaction of CuX₂·nH₂O with diethylenetriamine (dien) in a molar ratio of 1:1 leads to the formation of square-pyramidal pentacoordinated complexes of the type [CuX(dien)(H₂O)]X. On the other hand, the reaction of equimolar quantities of copper(II) nitrate and dien with nicotinate anions (equimolar quantities of pyridinecarboxylic acid and NaOH) in ethanolic solutions gives a solid monomeric complex [Cu(nic)(NO₃)dien)(H₂O)]·H₂O in which the coordination polyhedron around the Cu(II) atom is a (4+1+1) distorted tetragonal bipyramid. Based on the molecular structure the electronic and IR spectra are discussed. Moreover, the results of the quantitative determination of antimicrobial activity of the isonic complexes [Cu(isonic)₂(H₂O)₄], [Cu(en)₂(H₂O)₂](isonic)₂, [Cu(isonic)(dien)(H₂O)](isonic), as well as isonicotinic acid, ethylenediamine and diethylenetriamine alone are discussed.     

Synthesis,crystal structure and magnetic properties of a nickel(II) complex containing a 2-pyridyl-substituted nitronyl nitroxide

A new complex of formula [Ni(NIT2Py)₂Cl(H₂O)]Cl·2CH₃OH, where NIT2Py is 2-(2′-pyridyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide, was synthesized and characterized structurally and magnetically. The structure consists of a [Ni(NIT2Py)₂Cl(H₂O)]⁺ ion, a chloride anion and two methanol molecules. The nickel(II) ion lies in a distorted octahedral environment; two nitrogen atoms and two oxygen atoms from NIT2Py ligands from the basal plane; one oxygen atom from a water molecule and one chloride anion occupy axial positions. Variable temperature magnetic susceptibility data show that there is strong antiferromagnetic coupling between the nickel(II) ion and nitronyl nitroxide radicals. The results suggest that the sign of the magnetic interaction depends on structural and ligand effects.     

Syntheses and structural characterization of trivalent lanthanide complexes of p-sulfonatothiacalix[4]arene

The X-ray crystallographic studies are reported for the water-soluble trivalent lanthanide complexes of the macrocyclic p-sulfonatothiacalix[4]arene [Gd(H₂O)₆((CH₃)₂SO)(p-sulfonatothiacalix[4]arene)]·H₃O⁺·5H₂O (1) and Na[Nd(H₂O)₆((CH₃)₂SO)(p-sulfonatothiacalix[4]arene)]·3H₂O (2). The complexes are isostructural and belong to monoclinic system, C2/m space group. The Ln³⁺ metal ion is coordinated by the thiacalixarene ligand via the sulfonato group, and also ligated by an oxygen atom of a dimethyl sulfoxide (DMSO) molecule that occupies the cavity of the thiacalixarene and six aqua ligands. The thiacalixarenes are linked by the coordinated water molecules through hydrogen bonding to form a 2D polymer. The p-sulfonatothiacalixarenes maintain the clay-like bi-layer structure in the coordination network.     

New Tetraazamacrocyclic Ligand with Neutral Pendent Groups 1,4,7,10-tetrakis (2-cyanoethyl)-l,4,7,10-tetraazacyclododecane (L) and Its Cobalt (Ⅱ), Nickel (Ⅱ) and Copper (Ⅱ) Complexes:Synthesis,Structural Characterization and Antitumor Activities

A new tetraazamacrocyclic ligand (L) with four neutral 2-cyanoethyl pendent groups and its divalent transition-metal complexes:[Co(L)(NO₃)]NO₃·H₂O (1),[Ni(L)(NO₃)]NO₃·3H₂O (2) and[Cu(L)(H₂O)](NO₃)₂ (3) have been synthesized. The crystal structures of (1) and (3) have been determined by X-ray analysis. In complex (1) the cobalt atom is coordinated by four nitrogen atoms and two oxygen atoms of a nitrate anion, which define a distorted octahedron. The other nitrate ion lies in the lattice as a counter ion.     

Copper(II) complexes with the N,N,O-tridentate ligand 6-amino-5-formyl-1,3-dimethyluracilato-(N6)-benzoylhydrazone: synthesis, spectral and XRD studies

From reactions between different Cu(II) salts and the Schiff base 6-amino-5-formyl-1,3-dimethyluracil-benzoylhydrazone (H₂BEZDO) in alcohol, six new copper complexes with simplified formulas [Cu(HBEZDO)(H₂O)(MeOH)]NO₃ (1), [CuCl(HBEZDO)(DMF)] (2), [CuBr(HBEZDO)]·2H₂O (3), CuBr(HBEZDO) (4), Cu(ClO₄)(HBEZDO)·H₂O (5), and Cu(SO₄)_1/2(HBEZDO)·1 H₂O (6) were isolated. The structures of compounds 1, 2 and 3 have been established by means of XRD diffraction methods. In the three compounds, the Schiff base acts as a tridentate monodeprotonated ligand through the N(6), N(51) and O(52) atoms, making two five- and six-membered chelate rings. In the structure of 1 and 2, the solvent molecules are coordinated giving square-based pyramidal environments, with the basal plane completed by a MeOH (1) or Cl (2) and the apical positions occupied by the oxygen atom of a water (1) or a DMF molecule (2). The molecular unit of the complex [CuBr(HBEZDO)]·2H₂O (3) is defined by a square-plane containing the three donor atoms of the organic ligand and a bromide ligand (Cu–Br 2.384 Å), but there is a stronger tetragonally elongated pyramidal geometry around the metal, the apical position of the polyhedron being occupied by a weakly bound-to-copper bromine atom (3.086 Å) of a neighbouring molecule. This fact gives the appearance of an apparent dimer with very asymmetric bromine bridges, in which there are no exchange interactions between metal centres. Also, infrared, magnetic and EPR data of the isolated complexes are reported.     

Synthesis and structural characterization of cobalt(II) and zinc(II) complexes with 2-(indazol-1-yl)-2-thiazoline (TnInA). X-ray characterization of [CoCl2(TnInA)2] · C2H6O and [(M)(TnInA)2(H2O)2](NO3)2 (M = Co, Zn)

Several complexes of 2-(indazol-1-yl)-2-thiazoline (TnInA) with the divalent ions Co and Zn have been synthesized by the direct combination of the ligand and the metal chloride or nitrate hydrated salts in ethanol. These complexes have been characterized by a variety of physical–chemical techniques. Moreover, the structures of [CoCl₂(TnInA)₂] · C₂H₆O (1) and [(M)(TnInA)₂(H₂O)₂](NO₃)₂ (M = Co, 3; Zn, 4) were determined by single-crystal X-ray diffraction. In all the complexes, the ligand TnInA bonds to the metal ion through the indazole and thiazoline nitrogen atoms. In complex 1 the environment around the cobalt ion may be described as a distorted octahedron with two TnInA ligands and two chlorine ligands. Compounds 3 and 4 are isostructural with a distorted octahedral geometry around the metal center, being linked to two water molecules and two TnInA ligands. However, in complex [ZnCl₂(TnInA)] (2) the zinc atom is four-coordinated with a probable tetrahedral environment with two chloro ligands and one TnInA ligand bonded to the metal ion.     

Synthesis,crystal structure and magnetic properties of Co(NIT4Py)(H2PDA)(H2O)3

A Co(II)-pyridyl substituted nitronyl nitroxide complex Co(NIT4Py)(H₂PDA)(H₂O)₃ has been synthesized and structurally characterized (NIT4Py: 2-(4′-pyridyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide and H₂PDA: 2,5-pyridine dicarboxylic acid). The compound is in the monoclinic space group P2(1)/c, a = 16.892(5) Å, b = 7.371(2) Å, c = 18.856(5) Å, β = 108.770(5)°, V = 2223.0(11) ų, Z = 4 and F(000) = 1064. The cobalt is in a distorted octahedral environment with one nitrogen from NIT4Py, one oxygen atom from H₂PDA, two oxygens from two water molecules in the basal plane and one nitrogen from H₂PDA and one water in the axial positions. The molecules are connected as a layered structure by intermolecular hydrogen bond interactions. Variable temperature magnetic susceptibility measurements reveal the occurrence of weak antiferromagnetic interactions in the compound.     

Mn(II) ion centers in novel coordination environment: a new two-dimensional coordination polymer [Mn(3,5-pdc)·2H2O]

The hydrothermal synthesis and structure of the coordination polymer [Mn(3,5-pdc)·2H₂O] (3,5-pdc=3,5-pyridinedicarboxylic acid) with a novel seven-coordination mode of Mn(II) ion is reported. The metal ion center is in the pentagonal bipyramid coordination environment. Oxygen atoms from two waters hold the axial sites, and four oxygen atoms from two chelated carboxylic groups and one nitrogen atom from one pyridine ring occupy the five planar sites. This novel coordination environment of Mn(II) ion may be due to the smaller steric effect of chelated carboxylic groups. Each 3,5-pdc ligand is in the same coordination mode to bridge three Mn(II) ion centers and lead to two-dimensional layers with water molecules between the layers. Hydrogen bonds, which are generated by these water molecules and carboxylic groups, connect the layers to form a three-dimensional structure.