Thienoquinolines: X—The fragmentation of thieno(2,3-b)quinoline and its derivatives under electron impact

A study has been made of the fragmentation upon electron impact of thieno(2,3-b)quinoline and sixteen of its derivatives containing methoxy, methylenedioxy, chloro, bromo, iodo, nitro and methyl substituents. Besides these, the fragmentation patterns of some S-oxides, and S,S-dioxides were also investigated. The majority of the spectra contain molecular ions and the principal fragmentation routes involve loss of carbon monosulphide and hydrogen cyanide from the molecular ion. Rearrangement of the molecular ion appears to precede the fragmentation process in the case of S,S-dioxides. The fragmentation of 4-methylthieno(2,3-b)quinoline is closely analogous to that of alkylquinolines. The main features of these spectra can be predicted from the fragmentation pathways proposed for the parent thieno(2,3-b)quinoline.     

Interpretation of alkyl diselenide and selenosulfenate mass spectra

The mass spectral fragmentation of aliphatic diselenides and selenosulfenates is analyzed to gain a better understanding of the behavior of these species. The main fragmentation pathways of these species include the fragmentation along the Se-C bond, fragmentation along the Se-Se or Se-S bonds and intra-molecular rearrangements. In general, negative ionization favors the fragmentation along the Se-Se or Se-S bonds while positive ionization leads to stable molecular ions. Density functional theory calculations of bond dissociation energies and molecular orbital analysis was undertaken to explain the observed trends in molecular fragmentation. Besides the analysis of molecular fragmentation, a phenomenon of molecular association in negative electron impact and positive chemical ionization conditions was observed and investigated using a high resolution time-of-flight mass spectrometer. Molecular association that occurs during the ionization of species includes the formation of symmetrical diselenides from asymmetrical selenosulfenates and formation of alkylseleno adducts from the corresponding diselenides. For species which is hard to resolve by mass analysis, such as isobars of CHSe, CH₂Se, and CH₃Se, the isotope pattern superimposition procedure was applied to define the overlapping clusters.     

Unimolecular photochemistry of n-alkenes studied by photodissociation-photoionization mass spectrometry

The 193-nm unimolecular photochemistry of n-alkenes from C₅ to C₁₄ is studied by photodissociation-photoionization mass spectrometry (PDPI/MS). In PDPI/MS, a UV laser induces neutral unimolecular photodissociation. The resulting neutral fragments and any remaining parent molecules are then softly ionized with coherent vacuum UV radiation and mass analyzed. Photodissociation of n-alkenes is dominated by cleavage of the β C?C bond. Products of α- and γ-cleavage are typically less than 20% as abundant as the β-cleavage fragments. Secondary fragmentation of the primary products occurs both by neutral fragmentation during photodissociation and by ionic fragmentation during photoionization. The energetics of the neutral secondary reactions indicate that between 400 and 500 kJ/mol is consumed during photodissociation. The abundances of many secondary fragmentation products decrease with increasing molecular size. Because neutral fragmentation occurs without significant isomerization, PDPI/MS provides structural information that is not available from ionic fragmentation in conventional mass spectrometric experiments.     

Spectres de masse des composés organiques. 5e communication. Perte de méthane et d'éthylène à partir des ions butyle

The loss of methane and ethylene in the mass-spectrometric fragmentation of different isomeric butyl ions which originate from butyl halides has been studied. The different carbon atoms in n-butyl are already equivalent after 10^?7 s, whereas the statistical distribution of the hydrogen atoms within the molecule can only be observed for the metastable peaks. A protonated cyclobutane structure is proposed as an intermediate product in the fragmentation of the n-butyl ion. The fragmentation of this model has been simulated by a computer. This allows prediction as to the time-scale of fragmentation. The comparison of this model fragmentation with that of isomeric butyl ions shows that, even in the decay of the tertiary butyl ion, the formation of the proposed rearranged cyclic structure competes favorably with the direct fragmentation.     

Negative Ion CID Fragmentation of <Emphasis Type="Italic">O-</Emphasis>linked Oligosaccharide Aldoses—Charge Induced and Charge Remote Fragmentation

Collision induced dissociation (CID) fragmentation was compared between reducing and reduced sulfated, sialylated, and neutral O-linked oligosaccharides. It was found that fragmentation of the [M – H]^– ions of aldoses with acidic residues gave unique Z-fragmentation of the reducing end GalNAc containing the acidic C-6 branch, where the entire C-3 branch was lost. This fragmentation pathway, which is not seen in the alditols, showed that the process involved charge remote fragmentation catalyzed by a reducing end acidic anomeric proton. With structures containing sialic acid on both the C-3 and C-6 branch, the [M – H]^– ions were dominated by the loss of sialic acid. This fragmentation pathway was also pronounced in the [M – 2H]^2– ions revealing both the C-6 Z-fragment plus its complementary C-3 C-fragment in addition to glycosidic and cross ring fragmentation. This generation of the Z/C-fragment pairs from GalNAc showed that the charges were not participating in their generation. Fragmentation of neutral aldoses showed pronounced Z-fragmentation believed to be generated by proton migration from the C-6 branch to the negatively charged GalNAc residue followed by charge remote fragmentation similar to the acidic oligosaccharides. In addition, A-type fragments generated by charge induced fragmentation of neutral oligosaccharides were observed when the charge migrated from C-1 of the GalNAc to the GlcNAc residue followed by rearrangement to accommodate the ^0,2A-fragmentation. LC-MS also showed that O-linked aldoses existed as interchangeable α/β pyranose anomers, in addition to a third isomer (25% of the total free aldose) believed to be the furanose form.     

Mass spectral cycloreversion reactions of 2-chloro-3,6-diaryl-3,4-dihydro-1,3,2-oxazaphosphorin-2-oxides

The mass spectral fragmentation modes of various 2-chloro-3,6-diaryl-3,4-dihydro-1,3,2-oxazaphosphorin-2-oxides—a novel ring system—reveal cycloreversion by two pathways. Retro Diels-Alder reaction by a stepwise mechanism is prominent in this system. The relative abundances of the enone and dienophile ions depend on the nature of the substituent attached to the double bond in this ring. Another retro Diels-Alder fragmentation process, involving the loss of PO₂Cl from the molecular ion, is preceded by a 1,3-allylic rearrangement and is the major fragmentation mode in the metastable time scale. Further fragmentation of the [M? PO₂Cl]⁺ imine ion seems to occur from cyclic dihydroquinoline intermediates by substitution elimination steps.     

Characterization of multiple fragmentation pathways initiated by collision‐induced dissociation of multifunctional anions formed by deprotonation of 2‐nitrobenzenesulfonylglycine

The correlation of anion structure with the fragmentation behavior of deprotonated nitrobenzenesulfonylamino acids was investigated using tandem mass spectrometry, isotopic labeling and computational methods. Four distinct fragmentation pathways resulting from the collision‐induced dissociation (CID) of deprotonated 2‐nitrobenzenesulfonylglycine (NsGly) were characterized. The unusual loss of the aryl nitro substituent as HONO was the lowest energy process. Subsequent successive losses of CO, HCN and SO₂ indicated that an ortho cyclization reaction had accompanied loss of HONO. Other pathways involving rearrangement of the ionized sulfonamide group, dual bond cleavage and intramolecular nucleophilic displacement were proposed to account for the formation of phenoxide, arylsulfinate and arylsulfonamide product ions at higher collision energies. The four distinct fragmentation pathways were consistent with precursor–product relationships established by CID experiments, isotopic labeling results and the formation of analogous product ions from 2,4‐dinitrobenzenesulfonylglycine and the Ns derivatives of alanine and 2‐aminoisobutyric acid. The computations confirmed a low barrier for ortho cyclization with loss of HONO and feasible energetics for each reaction step in the four pathways. Computations also indicated that three of the fragmentation pathways started from NsGly ionized at the carboxyl group. Overall, the pathways identified for the fragmentation of the NsGly anion differed from processes reported for anions containing a single functional group, demonstrating the importance of functional group interactions in the fragmentation pathways of multifunctional anions. Copyright © 2014 John Wiley & Sons, Ltd.     

Ortho effects of a nitro group in 2′,3′ and 4′monosubstituted-trans-2,4-dinitrostilbenes on electron impact. IV

The mass spectral fragmentation patterns of thirteen 2′,3′ and 4′-R-trans-2,4-dinitrostilbenes obtained by electron impact have been studied. The main routes of fragmentation involves loss from the molecular ion due to the ortho effects of the 2-nitro substituents. Substitution on positions 2′,3′ and 4′ of stilbene moiety does not influence the fragmentation patterns.     

Mass spectra of organoarsenic compounds—II: Electron-impact-induced fragmentation of 2-substituted-1,2,2-dioxarsenanes

The electron-impact-induced fragmentation of 2-substituted 1,3,2-dioxarsenanes has been studied. The main fragmentation modes have been determined with the use of high resolution mass measurements and by application of the metastable defocusing technique. The predominant fragmentation for the 2-alkyl-1,3,2-dioxarsenanes proceeds via the loss of the 2-substituent from the molecular ion. In the case of 2-phenyl-1,3,2-dioxarsenanes elimination of the phenyl group competes with the formation of a C₆H₅ As ion as well as loss of aldehyde from the molecular ions.     

Stabilization of even-electron ions in 4-amino-substituted cytosines. Appearance of the strong ortho effect between an aryl substituent and the pyrimidinyl ring

The mass fragmentation of 4-arylaminocytosine derivatives was investigated and it was found that the ortho effect is mainly responsible for the strong stabilization of even-electron ions formed during fragmentation. The ortho effect in this class of compounds completely eliminates other possible fragmentation patterns. This effect disappears when the aryl substituent is separated from the 4-amino group of the cytosine moiety by a methylene group.     

Constituents of cannabis sativa L. XII—mass spectral fragmentation patterns for some. Cannabinoid acid as their TMS derivatives

Fragmentation schemes for a number of TMS derivatized cannabinoid acids are described. Specific fragmentation pathways and rearrangement mechanisms were determined based on the ion composition of deuterium labeled derivatives. Significant differences in the mode of fragmentation of the two isomeric Δ⁹-tetrahydrocannabinolic acids are described. These results are based on information obtained from deuterium labeling and high resolution data or by the extension of previously reported mechanisms for neutral cannabinoids. Comparisons of the fragmentation schemes between the neutral and acidic cannabinoids are used to confirm many of the fragmentation mechanisms.     

Mass spectra of monosubstituted trans-stilbenes

The mass spectra of twenty-eight monosubstituted trans-stilbenes in ortho, meta, para and alpha positions with ? N(CH₃)₂, ? NH₂, ? OCH₃, ? OH, ? Br, ? Cl, ? F, ? CH₃, ? COOH, ? CN and ? NO₂ groups as substituents have been studied. A detailed fragmentation pathway is given for stilbene. This fragmentation, characteristic for most of the substituted stilbenes, takes place either from the molecular or from the [M - Substituent] ion. In o-nitro-, o-methoxy-,α-carboxyl- and α-methylstilbene, however, rearrangement reactions prior to fragmentation influence the fragmentation pattern.     

Dual mechanisms for the fragmentation of 1-benzoylbenzotriazole upon electron impact

The electron impact induced fragmentation of 1-benzoylbenzotriazole has been studied by ¹³C labelling experiments. It has been found that the loss of CO from the [M ? N₂]⁺˙ ions proceeds by two routes; about 78% of the ions decompose via the molecular ions of the corresponding thermal fragmentation product, 2-phenylbenzoxazole, and 22% via those of the corresponding photochemical fragmentation product, 6-phenanthridone.     

Fragmentation Pathways of Singly- and Doubly-charged Ions in the Mass Spectra of Si-, N- and C-Substituted 1,3-Dioxa-6-aza-2-silacyclooctanes

The fragmentation pathways of singly- and doubly-charged ions in the mass spectra of Si-, N-, and C-substituted 1,3-dioxa-6-aza-2-silacyclooctanes upon electron impact have been studied. The directions for the fragmentation of the singly- and doubly-charged molecular ions differ markedly. All the doubly-charged fragmentation ions are formed by the loss of neutral molecules from M⁺⁺ and contain nitrogen and silicon atoms.     

Elucidating collision induced dissociation products and reaction mechanisms of protonated uracil by coupling chemical dynamics simulations with tandem mass spectrometry experiments

In this study we have coupled mixed quantum‐classical (quantum mechanics/molecular mechanics) direct chemical dynamics simulations with electrospray ionization/tandem mass spectrometry experiments in order to achieve a deeper understanding of the fragmentation mechanisms occurring during the collision induced dissociation of gaseous protonated uracil. Using this approach, we were able to successfully characterize the fragmentation pathways corresponding to ammonia loss (m/z 96), water loss (m/z 95) and cyanic or isocyanic acid loss (m/z 70). Furthermore, we also performed experiments with isotopic labeling completing the fragmentation picture. Remarkably, fragmentation mechanisms obtained from chemical dynamics simulations are consistent with those deduced from isotopic labeling. Copyright © 2015 John Wiley & Sons, Ltd.     

Mass-spectral behavior of nitrohydroxy- and nitromethoxymethylindoles

The principal pathways in the fragmentation of isomeric nitrohydroxy- and nitromethoxymethylindoles containing functional groups in the benzene ring were established by means of high-resolution mass spectrometry and deuterium labeling. The fragmentation of these compounds proceeds via different pathways as a function of the orientation of the functional substituants and the pyrrole nitrogen atom and differs from the fragmentation of other nitroarenes. The data obtained make it possible to reliably identify isomeric substances.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 8, pp. 1070–1075, August, 1978.     

Substituent effects in the mass spectral fragmentation of aryl esters

The mass spectra of m- and p-substituted phenyl acetates, phenyl propionates, phenyl chloroacetates and phenyl fluoroacetates have been determined. The fragmentation of aryl esters is affected by acyl substituents as well as by aryl substituents. Esters having acyl groups of low ionization potential show greater changes in fragmentation because of aryl substituents than those having acyl groups of high ionization potential. Each series has a fairly definite crossover point where fragmentation changes from predominant rearrangement to predominant cleavage.     

Tracking radical migration in large hydrogen deficient peptides with covalent labels: Facile movement does not equal indiscriminate fragmentation

Photodissociation of iodo-tyrosine modified peptides yields localized radicals on the tyrosine side chain, which can be further dissociated by collisional activation. We have performed extensive experiments on model peptides, RGYALG, RGYG, and their derivatives, to elucidate the mechanisms underlying backbone fragmentation at tyrosine. Neither acetylation nor deuteration of the tyrosyl phenolic hydrogen significantly affects backbone fragmentation. However, deuterium migration from the tyrosyl β carbon is concomitant with cleavage at tyrosine. Substitution of tyrosine with 4-hydroxyphenylglycine, which does not have β hydrogens, results in almost complete elimination of backbone fragmentation at tyrosine. These results suggest that a radical situated on the β carbon is required for a-type fragmentation in hydrogen-deficient radical peptides. Replacement of the αH of the residue adjacent to tyrosine with methyl groups results in significant diminution of backbone fragmentation. The initial radical abstracts an αH from the adjacent amino acid, which is poised to “rebound” and abstract the βH of tyrosine through a six-membered transition-state. Subsequent β-scission leads to the observed a-type backbone fragment. These results from deuterated peptides clearly reveal that radical migration in peptides can occur and that multiple migrations are not infrequent. Counterintuitively, close examination of all experimental results reveals that the probability for fragmentation at a particular residue is well correlated with thermodynamic radical stability. A-type fragmentation therefore appears to be most likely when favorable thermodynamics are combined with the relevant kinetic control. These results are consistent with ab initio calculations, which demonstrate that barriers to migration are significantly smaller in magnitude than probable dissociation thresholds.     

The mass spectra of thiochromanone and related compounds

The mass spectra of thiochromanone (I), isothiochromanone (II)-2-, 3- and 8-methylthiochromanone and the sulfoxides and sulfones derived from these cyclic sulfides have been determined and the major fragmentation routes established. For the iso series loss of SO or SO₂ competes effectively with the retro-Diels-Alder reaction; however, for the thiochromanone derivatives the retro-Diels-Alder reaction is the major fragmentation route. There is no evidence for rearrangement of the sulfoxides or sulfones to sulfenates or sulfinates, respectively, prior to fragmentation.     

Über die elektronenstossinduzierte phenyl-Umlagerung bei 4-Phenyl-chinuclidinen

The mass spectra of 4-phenylquinuclidines are characterised by an easy loss of C₇H₇ from the molecular ion. This unexpected fragmentation process can be explained by phenyl migration prior to fragmentation.