[3+2] Fragmentation of a Pentaphosphido Ligand by Cyanide

The activation of white phosphorus (P₄) by transition‐metal complexes has been studied for several decades, but the functionalization and release of the resulting (organo)phosphorus ligands has rarely been achieved. Herein we describe the formation of rare diphosphan‐1‐ide anions from a P₅ ligand by treatment with cyanide. Cobalt diorganopentaphosphido complexes have been synthesized by a stepwise reaction sequence involving a low‐valent diimine cobalt complex, white phosphorus, and diorganochlorophosphanes. The reactions of the complexes with tetraalkylammonium or potassium cyanide afford a cyclotriphosphido cobaltate anion 5 and 1‐cyanodiphosphan‐1‐ide anions [R₂PPCN]^? ( 6‐R ). The molecular structure of a related product 7 suggests a novel reaction mechanism, where coordination of the cyanide anion to the cobalt center induces a ligand rearrangement. This is followed by nucleophilic attack of a second cyanide anion at a phosphorus atom and release of the P₂ fragment.     

Mechanism of ligand exchange studied using transition path sampling

The mechanism of intermolecular ligand exchange has been studied using transition path sampling (TPS) based molecular dynamics (MD) simulations. Specifically, the exchange of solvent molecules bound to unsaturated Cr(CO)5 in methanol solution has been investigated. The results of the TPS simulations have shown that there are multiple steps in the reaction mechanism. The first involves partial dissociation of the coordinated solvent from the Cr metal center followed by association with a new methanol molecule between the normally void first and second solvent layers. After diffusive motion of the exchanging ligands, the last step involves the originally bound methanol molecule moving into the bath continuum followed by solvation of the Cr metal fragment by the exchanging ligand. It has been found that the reaction center (defined as the organometallic fragment and two exchanging ligands only) and the solvent bath have favorable interactions. This is likely due to the adiabatic nature of the ligand exchange transition. The ability to understand the microscopic molecular dynamics of a chemical process based on a free energy analysis is also discussed.     

N-heterocyclic phosphenium ligands as sterically and electronically-tunable isolobal analogues of nitrosyls

The coordination chemistry of an N-heterocyclic phosphenium (NHP)-containing bis(phosphine) pincer ligand has been explored with Pt(0) and Pd(0) precursors. Unlike previous compounds featuring monodentate NHP ligands, the resulting NHP Pt and Pd complexes feature pyramidal geometries about the central phosphorus atom, indicative of a stereochemically active lone pair. Structural, spectroscopic, and computational data suggest that the unusual pyramidal NHP geometry results from two-electron reduction of the phosphenium ligand to generate transition metal complexes in which the Pt or Pd centers have been formally oxidized by two electrons. Interconversion between planar and pyramidal NHP geometries can be affected by either coordination/dissociation of a two-electron donor ligand or two-electron redox processes, strongly supporting an isolobal analogy with the linear (NO(+)) and bent (NO(-)) variations of nitrosyl ligands. In contrast to nitrosyls, however, these new main group noninnocent ligands are sterically and electronically tunable and are amenable to incorporation into chelating ligands, perhaps representing a new strategy for promoting redox transformations at transition metal complexes.     

Symmetrical P4 cleavage at cobalt: characterization of intermediates on the way from P4 to coordinated P2 units

Degradation of white phosphorus (P(4)) in the coordination sphere of transition metals is commonly divided into two major pathways depending on the P(x) ligands obtained. Consecutive metal-assisted P-P bond cleavage of four bonds of the P(4) tetrahedron leads to complexes featuring two P(2) ligands (symmetric cleavage) or one P(3) and one P(1) ligand (asymmetric cleavage). A systematic investigation of the degradation of white phosphorus P(4) to coordinated μ,η(2:2)-bridging diphosphorus ligands in the coordination sphere of cobalt is presented herein as well as isolation of each of the decisive intermediates on the reaction pathway. The olefin complex [Cp*Co((i)Pr(2)Im)(η(2)-C(2)H(4))], 1 (Cp* = η(5)-C(5)Me(5), (i)Pr(2)Im = 1,3-di-isopropylimidazolin-2-ylidene), reacts with P(4) to give [Cp*Co((i)Pr(2)Im)(η(2)-P(4))], 2, the insertion product of [Cp*Co((i)Pr(2)Im)] into one of the P-P bonds. Addition of a further equivalent of the Co(I) complex [Cp*Co((i)Pr(2)Im)(η(2)-C(2)H(4))], 1, induces cleavage of a second P-P bond to yield the dinuclear complex [{Cp*Co((i)Pr(2)Im)}(2)(μ,η(2:2)-P(4))], 3, in which a kinked cyclo-P(4)(4-) ligand bridges two cobalt atoms. Consecutive dissociation of the N-heterocyclic carbene with concomitant rearrangement of the cyclo-P(4) ligand and P-P dissociation leads to complexes [Cp*Co(μ,η(4:2)-P(4))Co((i)Pr(2)Im)Cp*], 4, featuring a P(4) chain, and [{Cp*Co(μ,η(2:2)-P(2))}(2)], 5, in which two isolated P(2)(2-) ligands bridge two [Cp*Co] fragments. Each of these reactions is quantitative if performed on an NMR scale, and each compound can be isolated in high yields and large quantities.     

Potential energy surface for (retro-)cyclopropanation: metathesis with a cationic gold complex

The gas-phase cyclopropanation and apparent metathesis reactivity of ligand-supported gold arylidenes with electron-rich olefins is explained by quantum-chemical calculations. A deep potential minimum corresponding to a metal-bound cyclopropane adduct is in agreement with the measured absolute energies of the cyclopropanation and metathesis channels and is also consistent with previously reported electronic effects of arylidenes and supporting phosphorus ylid ligands on the product ratios. In the gas phase, the rate-determining step for the cyclopropanation is dissociation of the Lewis-acidic metal fragment, whereas the metathesis pathway features several rate-limiting transition states that are close in energy to the final product dissociation and hence contribute to the overall reaction rate. Importantly, the presented potential energy surface also accounts for the recently reported gold-catalyzed solution-phase retro-cyclopropanation reactivity.     

On the ligand properties of the P- versus the N-heterocyclic carbene for a Grubbs catalyst in olefin metathesis

The 1,4-diphospha-2-azol-5-ylidene is a homologue to the Ender’s type carbene. It is a possible candidate for a ligand in the metathesis reaction of olefins. Based on density functional calculations the differences between the electronic structures of both systems are evaluated. The NHC (N-heterocyclic carbene) possesses a larger singlet–triplet energy separation than the PHC (P-heterocyclic carbene) analogue. Thus the latter exerts a larger Lewis acidity than the former. In comparison with, the donor-ability (σ-basicity) in both systems is similar. As a consequence for the PHC carbene a Ru-fragment as a ligand for catalysis is stronger bound. This causes in the olefin metathesis a lower dissociation energy (compared to the NHC analogue) with respect to the formation of the catalyst active 14el species. As a consequence, the olefin will be weaker bound as well. This can be overcome by attaching sterically demanding substituents such as mesityl or super-mesityl to the phosphorus atoms. They induce mutual steric hindrance with concomitant increase of the S–T separation of the free carbene. Thus the Lewis acidity of the carbene is reduced. On this basis for the PHC’s with larger S–T energy separations the dissociation energy of the phosphine fragment is raised and the adding olefin fragment will be stronger bound to the transition metal. While these effects describe the electronic situation in the reactive species, steric effects at the ligand carbene mediate the stabilities of the individual intermediates in the metathesis reaction by exertion of inter- and intra-ligand repulsion.     

Car-Parrinello molecular dynamics study of the initial dinitrogen reduction step in Sellmann-type nitrogenase model complexes

We have studied reduction reactions for nitrogen fixation at Sellmann-type model complexes with Car-Parrinello simulation techniques. These dinuclear complexes are especially designed to emulate the so-called open-side FeMoco model. The main result of this work shows that in order to obtain the reduced species several side reactions have to be suppressed. These involve partial dissociation of the chelate ligands and hydrogen atom transfer to the metal center. Working at low temperature turns out to be one necessary pre-requisite in carrying out successful events. The successful events cannot be described by simple reaction coordinates. Complicated processes are involved during the initiation of the reaction. Our theoretical study emphasizes two experimental strategies which are likely to inhibit the side reactions. Clamping of the two metal fragments by a chelating phosphane ligand should prevent dissociation of the complex. Furthermore, introduction of tert-butyl substituents could improve the solubility and should thus allow usage of a wider range of (mild) acids, reductants, and reaction conditions.     

The CO/PC analogy in coordination chemistry and catalysis

This short account summarizes recent results obtained in the coordination chemistry of phosphinines and emphasizes their analogy with CO ligands. Reduced complexes can be easily assembled through the reaction of reduced 2,2′-biphosphinine dianions with transition metal fragments. Theoretical calculations were performed to establish the oxidation state of the metal in these complexes. Though many reduced complexes are available, phosphinines proved to be too sensitive toward nucleophiles to be used as efficient ligands in most catalytic processes. However, the high electrophilicity of the phosphorus atom can be exploited to synthesize phosphacylohexadienyl anions which exhibit a surprising coordination chemistry. When phosphino sulfide groups are incorporated as ancillary tridentate anionic SPS ligands can be easily produced. These ligands can bind different transition metal fragments such as M-X (M = group 10 metal, X = halogen), Rh-L (L = 2 electron donor ligand), Cu-X and Au-X (X = halogen). Palladium(II) complexes proved to be active catalyst in the Miyaura cross-coupling reaction. Bidentate anionic PS ligands were also synthesized following a similar approach. Their Pd(II) (allyl) derivatives showed a very good activity in the Suzuki catalyzed cross-coupling process that allows the synthesis of biphenyl derivatives through the reaction of phenylboronic acid with bromoarenes.     

Ligand and metal-ion effects in metal-ion clusters used for chiral analysis of alpha-hydroxy acids by the kinetic method

Chiral recognition of alpha-hydroxy acids has been achieved, and mixtures of enantiomers have been quantified in the gas phase, by using the kinetics of competitive unimolecular dissociation of singly-charged transition metal ion-bound trimeric complexes, [M(II)(A)(ref*)(2)-H](+) (M(II)=divalent transition metal ion; A=alpha-hydroxy acid; ref*=chiral reference ligand), to form the dimeric complexes [M(II)(A)(ref*)-H](+) and [M(II)(ref*)(2)-H](+). Chiral selectivity, the ratio of these two fragment ion abundances for the complex containing the analyte in one enantiomeric form expressed relative to that for the fragments of the corresponding complex containing the other enantiomer, ranges from 0.65 to 7.32. Chiral differentiation is highly dependent on the choice of chiral reference compound and central metal ion. The different coordination geometry of complexes resulting from the different d-orbital electronic configurations of these transition metal ions plays a role in chiral discrimination. Of all the transition metal ions examined chiral recognition is lowest for Cu(II), because of large distortion of the coordination complexes, and hence weak metal-ligand interactions and small stereochemical effects. It seems that two independent pi-cation interactions occur when N-acetyl-substituted aromatic amino acids used as the reference ligands and this accounts for improved chiral discrimination. If both metal-ligand and ligand-ligand interactions are optimized, large chiral selectivity is achieved. The sensitive nature of the methodology and the linear relationship between the logarithm of the fragment ion abundance ratio and the optical purity, which are intrinsic to the kinetic method, enable mixtures to be analyzed for small enantiomeric excess ( ee) by simply recording the ratios of fragment ion abundances in a tandem mass spectrum.     

Diastereomeric differentiation of peptides with CuII and FeII complexation in an ion trap mass spectrometer

Complexation by transition metal ions (CuII and FeII) was successfully used to differentiate the diastereomeric YAGFL, YDAGFL and Y(D)AGF(D)L pentapeptides by electrospray ionization-ion trap mass spectrometry in the positive ion mode using low-energy collision conditions. This distinction was allowed by the stereochemical effects due to the (D)Leu/(L)Leu and the (D)Ala/(L)Ala residues yielding various steric interactions which direct relative dissociation rate constants of the binary [(M - H) + MeII]+ complexes (Me = Cu or Fe) subjected to low-energy, collision-induced dissociation processes. The interpretation of the collision-induced dissociation spectra obtained from the diastereomeric cationized peptides allowed the location of the deprotonated site(s), leading to the postulation of ion structures and fragmentation pathways for both the [(M - H) + CuII]+ and [(M - H) + FeII]+ complexes, which differed significantly. With CuII, consecutive fragmentations, initiated by the decarboxylation at C-terminus, were favored relative to sequence product ions. On the other hand, with FeII, competitive fragmentations resulting in abundant sequence product ions and significant internal losses were preferred. This could be explained by different localizations of the negative charge, which directs the orientation of both the [(M - H) + CuII]+ and [(M - H) + FeII]+ binary complexes fragmentations. Indeed, the free negative charge of the [(M - H) + CuII]+ ions was mainly located at one oxygen atom: either at the C-terminal carboxylic group or, to a minor extent, at the Tyr phenol group (i.e. zwitterionic forms). On the other hand, the negative charge of the [(M - H) + FeII]+ ions was mainly located at one of the nitrogen atoms of the peptide backbone and coordinated to FeII (i.e. salt non-zwitterionic form).Moreover, this study reveals the particular behavior of CuII reduced to CuI, which promotes radical losses not observed from the peptide-FeII complexes. Finally, this study shows the analytical potentialities of the complexation of transition metal ions with peptides providing structural information complementary to that obtained from low-energy, collision-induced dissociation processes of protonated or deprotonated peptides.     

Organometallic Probe for the Electronics of Base‐Stabilized Group 11 Metal Cations

A number of trimetalloborides have been synthesized through the reactions of base‐stabilized coinage metal chlorides with a dimanganaborylene lithium salt in the hope of using this organometallic platform to compare and evaluate the electronics of these popular coinage metal fragments. The adducts of Cu^I, Ag^I, and Au^I ions, stabilized by tricyclohexylphosphine (PCy₃), N‐1,3‐bis(4‐methylphenyl)imidazol‐2‐ylidene (ITol), or 1‐(2,6‐diisopropylphenyl)‐3,3,5,5‐tetramethylpyrrolidin‐2‐ylidene (CAAC), with [{Cp(CO)₂Mn}₂B]^? were studied spectroscopically, structurally, and computationally. The geometries of the adducts fall into two classes, one symmetric and one asymmetric, each relying on the combined characteristics of both the metal and ligand. The energetic factors proposed as the causes of the structural differences were investigated by ETS‐NOCV (extended transition state‐natural orbitals for chemical valence) analysis, which showed the final geometry to be controlled by the competition between the tendency of the coinage metal to adopt a higher or lower coordination number and the willingness of the cationic fragment to participate in back‐bonding interactions.     

Ligands Based on Phosphine-Stabilized Aluminum(I), Boron(I), and Carbon(0)

A systematic quantum chemical study of the bonding in d⁶-transition-metal complexes, containing phosphine-stabilized, main-group-element fragments, (R₃P)₂E, as ligands (E=AlH, BH, CH⁺, C), is reported. By using energy decomposition analysis, it is demonstrated that a strong M−E bond is accompanied by weak P−E bonds, and vice versa. Although the Al−M bond is, for example, found to be very strong, the weak Al−P bond suggests that the corresponding metal complexes will not be stable towards phosphine dissociation. The interaction energies for the boron(I)-based ligand are lower, but still higher than those for two-carbon-based ligands. For neutral ligands, electrostatic interactions are the dominating contributions to metal–ligand bonding, whereas for the cationic ligand a significant destabilization, with weak orbital and even weaker electrostatic metal–ligand interactions, is observed. Finally, for iron(II) complexes, it is demonstrated that different reactivity patterns are expected for the four donor groups: the experimentally observed reversible E−H reductive elimination of the borylene-based ligand (E=BH) exhibits significantly higher barriers for the protonated carbodiphosphorane (CDP) ligand (E=CH) and would proceed through different intermediates and transition states. For aluminum, such reaction pathways are not feasible (E=AlH). Moreover, it is demonstrated that the metal hydrido complexes with CDP ligands might not be stable towards reduction and isomerization to a protonated CDP ligand and a reduced metal center.     

Mapping disulfide bonds in insulin with the route 66 method: Selective cleavage of S-C bonds using alkali and alkaline earth metal enolate complexes

Simple and fast identification of disulfide linkages in insulin is demonstrated with a peptic digest using the Route 66 method. This is accomplished by collisional activation of singly and doubly charged cationic Na⁺ and Ca²⁺ complexes generated using electrospray ionization mass spectrometry (ESI-MS). Collisional activation of doubly charged metal complexes of peptides with intermolecular disulfide linkages yields two sets of singly charged paired products separated by 66 mass units resulting from selective S-C bond cleavages. Highly selective elimination of 66 mass units, which corresponds to the molecular weight of hydrogen disulfide (H₂S₂), is observed from singly charged metal complexes of peptides with disulfide linkages. The mechanism proposed for these processes is initiated by formation of a metal-stabilized enolate at Cys, followed by cleavage of the S-C bond. Further activation of the products yields sequence information that facilitates locating the position of the disulfide linkages in the peptic digest fragments. For example, the doubly charged Ca²⁺ complex of the peptic digest product GIVEQCCASVCSL/FVNQHLCGSHL yields paired products separated by 66 mass units resulting from selective S-C bond cleavages at an intermolecular disulfide linkage under low-energy collision-induced dissociation. Further activation of the product comprising the A chain reveals the presence of a second disulfide bridge, an intramolecular linkage. Experimental and theoretical studies of the disulfide linked model peptides provide mechanistic details for the selective cleavage of the S-C bond.     

Time-efficient flexible superposition of medium-sized molecules

We present an efficient algorithm for the structural alignment of medium-sized organic molecules. The algorithm has been developed for applications in 3D QSAR and in receptor modeling. The method assumes one of the molecules, the reference ligand, to be presented in the conformation that it adopts inside the receptor pocket. The second molecule, the test ligand, is considered to be flexible, and is assumed to be given in an arbitrary low-energy conformation. Ligand flexibility is modeled by decomposing the test ligand into molecular fragments, such that ring systems are completely contained in a single fragment. Conformations of fragments and torsional angles of single bonds are taken from a small finite set, which depends on the fragment and bond, respectively. The algorithm superimposes a distinguished base fragment of the test ligand onto a suitable region of the reference ligand and then attaches the remaining fragments of the test ligand in a step-by-step fashion. During this process, a scoring function is optimized that encompasses bonding terms and terms accounting for steric overlap as well as for similarity of chemical properties of both ligands. The algorithm has been implemented in the FLEXS system. To validate the quality of the produced results, we have selected a number of examples for which the mutual superposition of two ligands is experimentally given by the comparison of the binding geometries known from the crystal structures of their corresponding protein–ligand complexes. On more than two-thirds of the test examples the algorithm produces rms deviations of the predicted versus the observed conformation of the test ligand below 1.5 Å. The run time of the algorithm on a single problem instance is a few minutes on a common-day workstation. The overall goal of this research is to drastically reduce run times, while limiting the inaccuracies of the model and the computation to a tolerable level.     

The mechanism of hydrogen formation induced by low-energy electron irradiation of hexadecanethiol self-assembled monolayers

The desorption of molecular hydrogen during low-energy electron irradiation of self-assembled monolayers containing n-alkanethiols has been previously reported, yet to date, there is no consensus as to the mechanism for the formation of this ubiquitous product. In this study, mixed monolayers containing known ratios of perhydrogenated and perdeuterated alkanethiols were chemisorbed to Au(111)/mica substrates and used as targets for low-energy electron irradiation; by measuring the electron-stimulated production of H(2), D(2), and HD as a function of the film composition, we unambiguously show that the desorbing molecular hydrogen is formed via a two-step bimolecular reaction process. The initial electron-molecule scattering event produces a reactive atomic fragment, which then abstracts a hydrogen atom from a nearby molecular site to produce the measured bimolecular yields; the contribution of one-step unimolecular dissociation channels to the overall molecular hydrogen yields is below the approximately 5% detection limit. The dependence of the electron-induced modifications to the film on the incident electron energy suggests that the primary event is dissociative electron attachment, and that the primary reactive fragment is most likely H(-). Quantitative analysis of the product yields shows that while approximately 80% of the molecular hydrogen is formed by this bimolecular mechanism within the film, the remaining 20% is formed from reactive atomic fragments that are ejected from the film and subsequently react with residual H(2)O adsorbed on the chamber walls.     

Guilty as charged: non-innocent behavior by a pincer ligand featuring a central cationic phosphenium donor

The synthesis of a new pincer ligand containing a central cationic N-heterocyclic phosphenium donor is described. The electrophilic nature of this cationic ligand renders it non-innocent, and coordination of this ligand to a PtCl(2) fragment leads to chloride migration from Pt to the cationic phosphorus center.     

CpRu(PH3)2SH与HNCS 的模型化反应机理

应用密度泛函理论(DFT), 通过CpRu(PH3)2SH(Cp=环戊二烯基)与HNCS的模型化反应, 探讨了CpRu-(PPh3)2SH与RNCS(R=Ph, 1-naphthyl)反应生成CpRu(PPh3)S2CNHR的两种可能的反应机理. 一种可能的机理是, 一个PH3配体先从反应物CpRu(PH3)2SH解离出来, 得到一个16e中间体, 然后经过一个氢转移反应, 得到产物; 另一种可能的机理是, 先经过一个氢转移反应, 然后一个PH3配体再从金属中心解离出来, 得到产物. 通过分析两种机理的势能曲线发现, 反应的决速步骤为从硫原子到氮原子的氢迁移过程. 第一种反应机理中反应的最高活化能明显比第二种反应机理的最高活化能高. 因此, 我们预测反应倾向于先发生氢迁移, 然后配体PH3再从金属中心上解离出来. 在该反应机理中, 尽管和产物相连的中间体稳定性稍高于产物, 由于熵效应致使最终产物仍然是实验中所得到的产物.     

Dissociation of doubly charged transition metal/polyether/pyridyl ligand complexes in a quadrupole ion trap mass spectrometer

The dissociation of a series of doubly charged pyridyl ligand/polyether/transition metal complexes is studied using electrospray ionization and collision activation methods. Both doubly charged mixed-ligand dimer and trimers are observed by electrospray ionization. The mixed-ligand trimer complexes always dissociate by cleavage of one entire ligand, whereas the mixed-ligand dimers show a more diverse array of fragmentation pathways, including charge reduction processes. The fragmentation pathways of these mixed-ligand dimers are influenced by the second ionization energy and electron configuration of the metal and relative coordination strength of the ligands.     

Electronic structure of [(CpCr)[(CO)3M]]mu-Cot (M = Cr, Fe): a theoretical study

The electronic structure of two cyclooctatetraene-bridged dinuclear first-row transition metal complexes of the type [(CpM)[(CO)3M']]mu-Cot (M = Cr; M' = Fe (1), Cr (2)) was investigated by complete active space self-consistent field (CASSCF) calculations. In this context the differences in the binding capabilities of the complex fragments CpM and (CO)3M are discussed on the basis of extended Huckel molecular orbital (MO) calculations. The geometries used for the CASSCF calculations for complex 1 were obtained from the crystal structure. For 2 a model structure was established by geometry optimization using density functional methods. The CASSCF results agree well with the experimental findings and provide insight into the binding situation of the two compounds. Complex 1 can be regarded as being composed of a chromocene-like subunit CpCr(eta5-C5H5) and the fragment (CO)3Fe(eta3-C3H3). A direct metal-metal bond is found, involving one initially singly occupied orbital of each fragment, leading to a doublet ground state for 1 with the remaining unpaired electron localized at the chromium center. For 2 no such direct metal-metal bond can be recognized. A very weak direct metal-metal interaction is induced by electron donation from the Cot2- ligand into a formally unoccupied metal-metal binding orbital combination. In the quartet ground state all three unpaired electrons are localized at the chromium center of the formally doubly positive charged CpCr unit, on which complex fragment [(CO)3Cr(eta5-Cot)]2- acts like a cyclopentadienyl ligand. The coordination sphere of the chromium center of the CpCr unit resembles that of a metallocene metal center and its metal 3d occupation scheme corresponds to that of vanadocene.