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1.
The infrared spectra of diprotonated species of thiocarbohydrazide and its perdeuterated derivative have been examined in the crystalline state. A complete vibrational assignment with a full normal coordinate treatment based on a Urey—Bradley type intramolecular potential Function supplemented with a valence force function for the out of plane and torsional modes is proposed and the origin of the amide II band splittings is explained. A CNDO/2 study of diprotonated thiocarbohydrazide and its neutral molecule is undertaken and the changes in the molecular electronic structures and conformations consequent to protonation are determined and briefly discussed. The magnitude of the N—N+H3 torsional barrier is estimated to be 21 kJ mol? (5.0 kcal mol?1) whereas the barrier for the C—N group is found to be 92 kJ mol?1 (22.0 kcal mol?1).  相似文献   

2.
The C?H activation in the tandem, “merry‐go‐round”, [(dppp)Rh]‐catalyzed (dppp=1,3‐bis(diphenylphosphino)propane), four‐fold addition of norborene to PhB(OH)2 has been postulated to occur by a C(alkyl)?H oxidative addition to square‐pyramidal RhIII?H species, which in turn undergoes a C(aryl)?H reductive elimination. Our DFT calculations confirm the RhI/RhIII mechanism. At the IEFPCM(toluene, 373.15 K)/PBE0/DGDZVP level of theory, the oxidative addition barrier was calculated to be 12.9 kcal mol?1, and that of reductive elimination was 5.0 kcal mol?1. The observed selectivity of the reaction correlates well with the relative energy barriers of the cycle steps. The higher barrier (20.9 kcal mol?1) for norbornyl–Rh protonation ensures that the reaction is steered towards the 1,4‐shift (total barrier of 16.3 kcal mol?1), acting as an equilibration shuttle. The carborhodation (13.2 kcal mol?1) proceeds through a lower barrier than the protonation (16.7 kcal mol?1) of the rearranged aryl–Rh species in the absence of o‐ or m‐substituents, ensuring multiple carborhodations take place. However, for 2,5‐dimethylphenyl, which was used as a model substrate, the barrier for carborhodation is increased to 19.4 kcal mol?1, explaining the observed termination of the reaction at 1,2,3,4‐tetra(exo‐norborn‐2‐yl)benzene. Finally, calculations with (Z)‐2‐butene gave a carborhodation barrier of 20.2 kcal mol?1, suggesting that carborhodation of non‐strained, open‐chain substrates would be disfavored relative to protonation.  相似文献   

3.
The N2H potential energy surface has been examined by ab initio molecular orbital theory using the 6-31G** basis set with correlation energy evaluated by Møller—Plesset perturbation theory to fourth order. The ΔE for N2H → N2 + H is ?14.4 kcal mol?1 and the barrier to dissociation is 10.5 kcal mol?1. Inclusion of zero-point vibrational energies reduces the barrier to 5.8 kcal mol?1.  相似文献   

4.
In terms of the density functional theory using the B3LYP functional, 1,2,3,4,5,6,7-heptaphenylcycloheptatriene was shown to be the most stable in the boat conformation of the cycloheptatriene ring with the H atom in the equatorial position. 1,5-Sigmatropic shifts of the H atom along the seven-membered ring perimeter take place when it is in the axial position through the asymmetric transition state with the barrier ΔE ZPE = 28.7 kcal mol?1. The H atom can attain the axial position upon inversion of the seven-membered ring, which is accompanied by the orthogonal turn of the phenyl group at the sp3-hybridized C atom (ΔE ZPE = 22.6 kcal mol?1). The energy barrier to the circular rearrangement of the H atom (ΔE ZPE = 32.2 kcal mol?1) explains formation of isomers during the high-temperature synthesis of di(p-tolyl)pentaphenylcycloheptatriene. The barrier to the 1,5-sigmatropic shifts of the phenyl group is 19.7 kcal mol?1 higher than that for the competing shifts of the H atom.  相似文献   

5.
Multireference configuration interaction (MRCI//6-31G**) ab initio calculations show that the barrier for hydrogen scrambling in the benzene radical cation is about 50 kcal mol?1. Once the internal energy is sufficient for a 1,2-hydrogen shift, the moving hydrogen can go to any position in the ring. The barrier for carbon scrambling via an isomerization to the fulvene structure is about 17 kcal mol?1 higher than that for hydrogen scrambling. Both of these values are far below the dissociation limit.  相似文献   

6.
The geometry and energy of 2-aza-1,3-butadiene and 2,3-diaza-1,3-butadiene have been calculated using the 6-31G* basis set as a function of the CNCC and CNNC dihedral angles, respectively. With the 2-aza derivative potential minima are located at 0° (trans) and at about 130° for a gauche structure approximately 9.5 kJ mol?1 less stable than the trans. Potential maxima are at about 75° giving a gauche barrier height of approximately 19 kJ mol?1 relative to the trans structure, and at 180° (cis) giving a barrier height of approximately 14.5 kJ mol?1 relative to the 130° gauche structure. With the 2,3-diaza derivative the gauche barrier has disappeared and there are a series of gauche structures in the region 70°–100° of almost equal energy 12.5-15 kJ mol?1 less stable than the trans. In addition the cis barrier is much greater, nearly 70 kJ mol?1 relative to the trans structure. Inclusion of electron correlation, accounting for about 50% of the correlation energy, produces no significant changes in the shape of the potential energy curves. There are systematic and progressive changes in almost all the geometrical parameters as the ?CH? groups in butadiene are replaced by ?N? . The outward tilt and compression within the methylene groups show adverse steric interactions to be operative in the cis structures. The values of Vnn indicate that gauche structures of both the 2-aza and the 2,3-diaza derivatives near the cis structure are more compact (as with butadiene), and gauche structures of the 2-aza derivative near the trans structure are less compact (as with butadiene). Originating in the changes in bond lengths and bond angles, rotation-independent nuclear–nuclear interactions again play an important role.  相似文献   

7.
Geometrical and energetic characteristics of crystal hydrates of individual aromatic sulfonic acids and their complexes with poly(vinyl alcohol) as well as the paths for the proton transport in them are calculated in the framework of the density functional theory (version B3LYP) employing the 6-31G** basis set. The energy of attachment of water to ortho-substituted aromatic sulfonic acids is demonstrated to diminish from 74.4 to 54.8 kJ mol?1 in the following series of substituents: -OH,-F,-CH3,-H,-Cl, and -COOH. For the dimers that comprise individual phenolsulfonic acids, the energy of attachment of one water molecule to the SO3H group is estimated to be equal to 92–105 kJ mol?1. In the dimers comprising individual phenolsulfonic acids, the specific energy of intermolecular bonds (bond energy per monomer molecule) is found to be equal to 49.3 and 58.5 kJ mol?1 for, respectively, phenol-2,4-disulfo and phenol-2-sulfo acids. During the formation of polymer membranes based on poly(vinyl alcohol) and phenolsulfonic acids, it is energetically favorable that at least one water molecule should remain in the vicinity of the SO3H fragment. According to the calculations, the proton migration along the SO3H group in anhydrous environment is hampered by a barrier of 125–132 kJ mol?1. In the presence of water, the proton conductivity is of a relay character, with an activation barrier equal to 21–33 kJ mol?1. The latter value is close to experimental data (17–25 kJ mol?1).  相似文献   

8.
The electronic structure and redox properties of the highly oxidizing, isolable RuV?O complex [RuV(N4O)(O)]2+, its oxidation reactions with saturated alkanes (cyclohexane and methane) and inorganic substrates (hydrochloric acid and water), and its intermolecular coupling reaction have been examined by DFT calculations. The oxidation reactions with cyclohexane and methane proceed through hydrogen atom transfer in a transition state with a calculated free energy barrier of 10.8 and 23.8 kcal mol?1, respectively. The overall free energy activation barrier (ΔG=25.5 kcal mol?1) of oxidation of hydrochloric acid can be decomposed into two parts: the formation of [RuIII(N4O)(HOCl)]2+G=15.0 kcal mol?1) and the substitution of HOCl by a water molecule (ΔG=10.5 kcal mol?1). For water oxidation, nucleophilic attack on RuV?O by water, leading to O? O bond formation, has a free energy barrier of 24.0 kcal mol?1, the major component of which comes from the cleavage of the H? OH bond of water. Intermolecular self‐coupling of two molecules of [RuV(N4O)(O)]2+ leads to the [(N4O)RuIV? O2? RuIII(N4O)]4+ complex with a calculated free energy barrier of 12.0 kcal mol?1.  相似文献   

9.
In this work, a density function theory (DFT) study is presented for the HNS/HSN isomerization assisted by 1–4 water molecules on the singlet state potential energy surface (PES). Two modes are considered to model the catalytic effect of these water molecules: (i) water molecule(s) participate directly in forming a proton transfer loop with HNS/HSN species, and (ii) water molecules are out of loop (referred to as out‐of‐loop waters) to assist the proton transfer. In the first mode, for the monohydration mechanism, the heat of reaction is 21.55 kcal · mol?1 at the B3LYP/6‐311++G** level. The corresponding forward/backward barrier lowerings are obtained as 24.41/24.32 kcal · mol?1 compared with the no‐water‐assisting isomerization barrier T (65.52/43.87 kcal · mol?1). But when adding one water molecule on the HNS, there is another special proton‐transfer isomerization pathway with a transition state 10T′ in which the water is out of the proton transfer loop. The corresponding forward/backward barriers are 65.89/65.89 kcal · mol?1. Clearly, this process is more difficult to follow than the R–T–P process. For the two‐water‐assisting mechanism, the heat of reaction is 19.61 kcal · mol?1, and the forward/backward barriers are 32.27/12.66 kcal · mol?1, decreased by 33.25/31.21 kcal · mol?1 compared with T. For trihydration and tetrahydration, the forward/backward barriers decrease as 32.00/12.60 (30T) and 37.38/17.26 (40T) kcal · mol?1, and the heat of reaction decreases by 19.39 and 19.23 kcal · mol?1, compared with T, respectively. But, when four water molecules are involved in the reactant loop, the corresponding energy aspects increase compared with those of the trihydration. The forward/backward barriers are increased by 5.38 and 4.66 kcal · mol?1 than the trihydration situation. In the second mode, the outer‐sphere water effect from the other water molecules directly H‐bonded to the loop is considered. When one to three water molecules attach to the looped water in one‐water in‐loop‐assisting proton transfer isomerization, their effects on the three energies are small, and the deviations are not more than 3 kcal · mol?1 compared with the original monohydration‐assisting case. When adding one or two water molecules on the dihydration‐assisting mechanism, and increasing one water molecule on the trihydration, the corresponding energies also are not obviously changed. The results indicate that the forward/backward barriers for the three in‐loop water‐assisting case are the lowest, and the surrounding water molecules (out‐of‐loop) yield only a small effect. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2006  相似文献   

10.
The synthesis and variable temperature 1H and 13C NMR spectra of three tetrahydro-1,2,4-oxadiazines are reported. The N(4)-Me inversion barriers are 6.8–7.0 (ax→ts) and 7.4–7.9 kcal mol?1 (eq→ts) with ΔG° 0.6–0.9 kcal mol?1. The N(2)-Me inversion barriers are 10.4–11.4 (ax→ts) and 11.6–13.1 kcal mol?1 (eq→ts) with ΔGδ 1.2–1.7 kcal mol?1. The barrier to ring inversion is ca. 12.7 kcal mol?1. “R value” analysis shows the ring to have a 56.5±2δ dihedral angle about the C(5)-(6) bond, indicative of the expected chair conformation.  相似文献   

11.
Geometry optimizations of the ground states as well as of the transition states for internal rotation and inversion have been performed by the semiempirical MNDO method for dimethyl nitrosamine (1), perfluordimethyl nitrosamine (2), N-nitroso aziridine (3), and N-nitroso azetidine (4). It was found that the potential barrier to internal rotation about the N-N bond is always of lower energy than that to inversion on the nitroso nitrogen.While the ground states tend to adopt structures which enable mesomerism, the lowest transition state is characterized by a pyramidal sp3-hybridized amino nitrogen. In accordance with experimental results the low barriers to rotation of 2 (7.96 kcal mol?1), 3 (3.38 kcal mol?1) and 4 (9.97 kcal mol?1) in comparison with 1 (12.54 kcal mol?1) indicate that in donor-acceptor molecules the transfer of charge can be limited by electronic and stereochemical effects. In particular, the equivalence of the α-methylene hydrogens which was observed in the NMR-spectrum of 3 is due to unhindered rotation and ring inveirsion.  相似文献   

12.
A modified version (MM 2′) of the Allinger's 1977 force field is checked against cycloheptane and cyclooctane. Cycloheptane is characterized by two pseudorotating itineraries, chair/twist-chair and boat/twist-boat, separated by a barrier of 8.5 kcal mol?1. The activation energy in the C/TC pseudorotation is estimated to be 0.96 kcal mol?1, while B and TB transform into each other freely at an energy level 3.8 kcal mol?1 above the global energy minimum (TC). With cyclooctane the lowest energy is calculated for the boat-chair form which participates in a pseudorotational process with TBC through a saddle point lying 3.5 kcal mol?1 above BC. The chair/chair and boat/boat families contain only one local minimum, crown and BB, respectively, on the MM 2′ surface. The results are presented as an illustration for quick coverage of torsional energy surface by two-bond driver calculation with the block-diagonal Newton–Raphson minimization, followed by the force search of stationary points by full-matrix Newton–Raphson optimization.  相似文献   

13.
The Beckmann rearrangement (BR) plays an important role in a variety of industries. The mechanism of this reaction rearrangement of oximes with different molecular sizes, specifically, the oximes of formaldehyde (H2C?NOH), Z‐acetaldehyde (CH3HC?NOH), E‐acetaldehyde (CH3HC?NOH) and acetone (CH3)2C?NOH, catalyzed by the Faujasite zeolite is investigated by both the quantum cluster and embedded cluster approaches at the B3LYP level of theory using the 6‐31G (d,p) basis set. To enhance the energetic properties, single point calculations are undertaken at MP2/6‐311G(d,p). The rearrangement step, using the bare cluster model, is the rate determining step of the entire reaction of these oxime molecules of which the energy barrier is between 50–70 kcal mol?1. The more accurate embedded cluster model, in which the effect of the zeolitic framework is included, yields as the rate determining step, the formaldehyde oxime reaction rearrangement with an energy barrier of 50.4 kcal mol?1. With the inclusion of the methyl substitution at the carbon‐end of formaldehyde oxime, the rate determining step of the reaction becomes the 1,2 H‐shift step for Z‐acetaldehyde oxime (30.5 kcal mol?1) and acetone oxime (31.2 kcal mol?1), while, in the E‐acetaldehyde oxime, the rate determining step is either the 1,2 H‐shift (26.2 kcal mol?1) or the rearrangement step (26.6 kcal mol?1). These results signify the important role that the effect of the zeolite framework plays in lowering the activation energy by stabilizing all of the ionic species in the process. It should, however, be noted that the sizeable turnover of a reaction catalyzed by the Brønsted acid site might be delayed by the quantitatively high desorption energy of the product and readsorption of the reactant at the active center.  相似文献   

14.
We report variational transition‐state theory calculations for the OH + O3→ HO2 + O2 reaction based on the recently reported double many‐body expansion potential energy surface for ground‐state HO4 [Chem Phys Lett 2000, 331, 474]. The barrier height of 1.884 kcal mol?1 is comparable to the value of 1.77–2.0 kcal mol?1 suggested by experimental measurements, both much smaller than the value of 2.16–5.11 kcal mol?1 predicted by previous ab initio calculations. The calculated rate constant shows good agreement with available experimental results and a previous theoretical dynamics prediction, thus implying that the previous ab initio calculations will significantly underestimate the rate constant. Variational and tunneling effects are found to be negligible over the temperature range 100–2000 K. The O1? O2 bond is shown to be spectator like during the reactive process, which confirms a previous theoretical dynamics prediction. © 2007 Wiley Periodicals, Inc. 39: 148–153, 2007  相似文献   

15.
Ab initio molecular orbital calculations with moderately large polarization basis sets and including valence-electron correlation have been used to examine the structure and dissociation mechanisms of protonated methanol [CH3OH2]+. Stable isomers and transition structures have been characterized using gradient techniques. Protonated methanol is found to be the only stable isomer in the [CH5O]+ potential surface. There is no evidence for a tightly-bound complex, [HOCH2]+…?H2, analogous to the preferred structure [CH3]+…?H2 of [CH5]+. Protonated methanol is found to possess a pyramidal arrangement of bonds at the oxygen atom with a barrier to inversion of 8kJ mol?1. The lowest energy fragmentation pathways are dissociation into methyl cation and water (predicted to require 284 kJ mol?1 with zero reverse activation energy) and loss of molecular hydrogen (endothermic by 138 kJ mol?1 but with a reverse activation barrier of 149 kJ mol?1). The results offer a possible explanation as to why production of [CH2OH]+ from the reaction of methyl cation with water is not observed. Other dissociation processes examined include loss of a hydrogen atom to yield the methylenoxonium radical cation or methanol radical cation (requiring 441 and 490 kJ mol?1, respectively) and loss of a proton to yield neutral methanol (requiring 784 kJ mol?1).  相似文献   

16.
The reaction paths in the chemical vapor deposition preparation of boron carbides with BCl3?CCH4?CH2 precursors were investigated theoretically in detail with a total number of 82 intermediates (IM) and 118 transition states (TS). The geometries of the species were optimized with B3PW91/6-311G(d,p) method and the TS as well as their linked IM were confirmed with the frequency and the intrinsic reaction coordinates analyses at the same theoretical level. The energy barriers and the reaction energies were determined with the accurate model chemistry method G3(MP2) after a diagnosis of the non-dynamic electronic correlations. The heat capacities and entropies were obtained with statistical thermodynamics. The Gibbs free energies at 298.15?K for all of the reaction steps were reported and the data at any temperature can be developed with the classical thermodynamics by using the fitted (as a function of temperature) heat capacities. All the possible elementary reactions, including both direct decomposition and the radical attacking dissociations for each reaction step were examined. It was found that there are nine reaction steps in the lowest reaction pathway to produce the final boron carbide and five steps to produce boron. The highest energy barrier in the lowest reaction pathway is 238.6?kJ?mol?1 at 298.15?K and 346.0?kJ?mol?1 at 1,200?K for producing BC, and is 294.7?kJ?mol?1 at 298.15?K and 314.2?kJ?mol?1 at 1,200?K for producing B.  相似文献   

17.
The potential energy surface for the β-lactam amidic CN bond breaking in the 3-cephem + OH? reaction was investigated by using the ab initio Hartree—Fock method with a 9s6p/7s3p/3s basis set. The investigated reaction is a model of the reaction between an antibiotic cephalosporin and an enzymatic nucleophilic group, this last reaction being related to the mode of action of β-lactam antibiotics. The minimum-energy reaction path is characterized by a tetrahedral intermediate ≈ 116 kcal mol?1 more stable than the reagents, by a barrier which corresponds to the partial breaking of the amidic bond and is ≈ 7 kcal mol?1 above the intermediate and by a product ≈ 31 kcal mol?1 more stable than the intermediate. The analysis of the wavefunction along the reaction path and the comparison with the β-lactam + OH? reaction pointed out the role of electron-withdrawing groups on the height of the barrier and the role of intramolecular hydrogen bonds on the structure and energy of the product. The calculations suggest a model of the antibiotic activity of cephalosporins which is compared with previous qualitative pictures.  相似文献   

18.
A theoretical analysis about the mechanism and kinetics of dimethyl carbonate (DMC) formation via oxidative carbonylation of methanol on Cu2O catalyst is explored using periodic density functional calculations, both in gas phase and in solvent. The effect of solvent is taken into account using the conductor‐like screening model. The calculated results show that CO insertion to methoxide species to produce monomethyl carbonate species is the rate‐determining step, the corresponding activation barrier is 161.9 kJ mol?1. Then, monomethyl carbonate species reacts with additional methoxide to form DMC with an activation barrier of 98.8 kJ mol?1, above reaction pathway mainly contributes to the formation of DMC. CO insertion to dimethoxide species to form DMC is also considered and analyzed, the corresponding activation barrier is 308.5 kJ mol?1, suggesting that CO insertion to dimethoxide species is not competitive in dynamics in comparison with CO insertion to methoxide species. The solvent effects on CO insertion to methoxide species involving the activation barriers suggest that the rate‐determining step can be significantly affected by the solvent, 70.2 kJ mol?1 in methanol and 63.9 kJ mol?1 in water, which means that solvent effect can reduce the activation barrier of CO insertion to methoxide species and make the reaction of CO insertion to methoxide in solvents much easier than that in gas phase. Above calculated results can provide good theoretical guidance for the mechanism and kinetics of DMC formation and suggest that solvent effect can well improve the performance of DMC formation on Cu2O catalyst in a liquid‐phase slurry. © 2012 Wiley Periodicals, Inc.  相似文献   

19.
A common feature of several classes of intrinsically reactive proteins with diverse biological functions is that they undergo self‐catalyzed reactions initiated by an N→O or N→S acyl shift of a peptide bond adjacent to a serine, threonine, or cysteine residue. In this study, we examine the N→O acyl shift initiated peptide‐bond hydrolysis at the serine residue on a model compound, glycylserine (GlySer), by means of DFT and ab initio methods. In the most favorable rate‐determining transition state, the serine ?COO? group acts as a general base to accept a proton from the attacking ?OH function, which results in oxyoxazolidine ring closure. The calculated activation energy (29.4 kcal mol?1) is in excellent agreement with the experimental value, 29.4 kcal mol?1, determined by 1H NMR measurements. A reaction mechanism for the entire process of GlySer dipeptide hydrolysis is also proposed. In the case of proteins, we found that when no other groups that may act as a general base are available, the N→O acyl shift mechanism might instead involve a water‐assisted proton transfer from the attacking serine ?OH group to the amide oxygen. However, the calculated energy barrier for this process is relatively high (33.6 kcal mol?1), thus indicating that in absence of catalytic factors the peptide bond adjacent to serine is no longer a weak point in the protein backbone. An analogous rearrangement involving the amide N‐protonated form, rather than the principle zwitterion form of GlySer, was also considered as a model for the previously proposed mechanism of sea‐urchin sperm protein, enterokinase, and agrin (SEA) domain autoproteolysis. The calculated activation energy (14.3 kcal mol?1) is significantly lower than the experimental value reported for SEA (≈21 kcal mol?1), but is still in better agreement as compared to earlier theoretical attempts.  相似文献   

20.
The barrier to internal rotation in a series of p-substituted acetophenones has been determined by means of low temperature carbon-13 n.m.r. and total bandshape analysis, resulting in: ΔG = 5·4 ± 0·1 kcal mol?1 (22·4 ± 0·4 kJ mol?1) for the unsubstituted acetophenone. The substituent effects on the barrier are found to be the same as for the corresponding benzaldehydes. The barrier height is discussed in terms of contributions from resonance and steric effects.  相似文献   

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