Comparison of collisional activation spectra of some positive ions produced both by charge reversal of negative ions and by decomposition of positive ions

The charge reversal collision induced decomposition mass analyzed ion kinetic energy spectrum of allyl anion has been compared with the collision induced dissociation mass analyzed ion kinetic energy spectrum of allyl cation and found to be identical except for the presence of +2 ions formed by charge stripping in the spectrum of the [C₃H₅]⁺ ion. Likewise, the collision induced dissociation mass analyzed ion kinetic energy charge reversal spectrum of [CH₃Se]^? has been compared with the collision induced dissociation mass analyzed ion kinetic energy spectrum of [CH₃Se]⁺ and found to be identical. A study of the pressure dependence of the collision induced dissociation mass analyzed ion kinetic energy spectrum of [C₃H₅]⁺ and [C₃H₅]^? showed increasing fragmentation with increasing collision gas pressure, and suggests that a greater mean number of collisions converts more energy to internal modes in the collision induced dissociation mass analyzed ion kinetic energy experiment even at low pressures.     

The elimination of carbon monoxide from molecular ions of phenol and other [C6H6O]+˙ isomers

Phenol and five acyclic isomeric compounds have been investigated using electron impact and field ionization techniques, mass analysed ion kinetic energy spectrometry and collision induced dissociation mass analysed ion kinetic energy spectrometry. The kinetic energy release data corresponding to the elimination of carbon monoxide from the molecular ions show that at least two structures of the reactant ion are involved. The electron impact and field ionization collision induced dissociation mass analysed ion kinetic energy spectra indicate that under electron impact conditions, the phenol ion partially isomerizes to another ion structure. An isomerization of about 40% to the structure of cis-2-hexen-4-yn-1-al is in good accordance with the spectral data.     

Electron impact-induced fragmentation of 2,1-benzisothiazoline 2,2-dioxide

The electron impact-induced fragmentation patterns of 2,1-benzisothiazoline 2,2-dioxide nitro derivatives were studied. The rationalizations proposed for the fragmentations are supported by accurate mass measurements, daughter ion (mass analysed ion kinetic energy and B/E linked-scan), parent ion, and constant neutral loss spectra in metastable and collision-induced dissociation modes and deuterium labelling.     

An isomer-specific high-energy collision-induced dissociation MS/MS database for forensic applications: a proof-of-concept on chemical warfare agent markers

Spectra database search has become the most popular technique for the identification of unknown chemicals, minimizing the need for authentic reference chemicals. In the present study, an isomer‐specific high‐energy collision‐induced dissociation (CID) MS/MS spectra database of 12 isomeric O‐hexyl methylphosphonic acids (degradation markers of nerve agents) was created. Phosphonate anions were produced by the electrospray ionization of phosphonic acids or negative‐ion chemical ionization of their fluorinated derivatives and were analysed in a hybrid magnetic‐sector–time‐of‐flight tandem mass spectrometer. A centre‐of‐mass energy (E_com) of 65 eV led to an optimal sequential carbon–carbon bond breakage, which was interpreted in terms of charge remote fragmentation. The proposed mechanism is discussed in comparison with the routinely used low‐energy CID MS/MS. Even‐mass (odd‐electron) charge remote fragmentation ion series were diagnostic of the O‐alkyl chain structure and can be used to interpret unknown spectra. Together with the odd‐mass ion series, they formed highly reproducible, isomer‐specific spectra that gave significantly higher database matches and probability factors (by 1.5 times) than did the EI MS spectra of the trimethylsilyl derivatives of the same isomers. In addition, ionization by negative‐ion chemical ionization and electrospray ionization resulted in similar spectra, which further highlights the general potential of the high‐energy CID MS/MS technique. Copyright © 2011 John Wiley & Sons, Ltd.     

Electron impact mass spectrometry of 2-(2-pyridyl)-2,3-dihydroxy-5-phenyl-4-pentene

The mass spectrometric behaviour of 2-(2-pyridyl)-2,3-dihydroxy-5-phenyl-4-pentene has been studied with the aid of B/E, B²/E linked scans, exact mass measurements, collisionally activated dissociation mass-analysed ion kinetic energy spectra, and labelling experiments. The primary loss of water is proved to involve both hydroxylic hydrogens, thus suggesting the formation of an epoxidic radical ion and the presence of extensive skeletal rearrangements.     

Dissociation of the diphenylnitrile imine radical cation into benzonitrile and [phenylnitrene]+˙

The collision induced dissociation/mass analysed ion kinetic energy mass spectra of 2,5-diphenyltetrazole demonstrate the decay sequence [diphenyltetrazole]^+˙→ [diphenylnitrile imine]^+˙→ m/z 91. The m/z 91 ion was shown to be identical to the ion formed by loss of N₂ from the phenyl azide radical cation, thus suggesting the phenylnitrene structure for the m/z 91 ion.     

Intramolecular aromatic substitution reactions in substituted N,N-dimethylthiobenzamide ions

The molecular ions of N,N-dimethylthiobenzamide and its ortho substituted derivatives (substituents CH₃, Cl, Br, I) lose a hydrogen atom and/or the ortho substituent. The mechanism of this process has been studied by measurements of the ionization energies, appearance energies of the product ions m/z 164 and the kinetic energy release during this process. The structure of the product ions m/z 164 and relevant reference ions have been investigated by mass analysed ion kinetic energy spectra, B/E linked scan spectra and collision induced decompositions. The results show clearly the formation of two different kinds of product ions m/z 164 depending on the substituent lost. Type a ions are formed by loss of a H atom or the CH₃ substituent and correspond to protonated 3,4-benzo-N-methylpyroline-2-thione. The formation of these ions occurs by a hydrogen rearrangement followed by an intramolecular substitution via a 5-membered cyclic intermediate and is associated with a large release of kinetic energy. In contrast, the loss of the halogeno substituents to give type b ions probably occurs via a direct displacement reaction by the sulfur atom of the thioamide group giving rise to Gaussian shaped peaks mass analysed ion kinetic energy spectra.     

Rearrangement of molecular ions following electron impact: IV—Origin of the [M—28]+˙ ions in the mass spectra of α-methyl-2-decalone

The transposition of the molecular ions (ring contraction) of 2-decalones is demonstrated by a study of the [M–28]⁺˙ peak and its homologue in labelled products using ionization and appearance energy measurements, and mass analysed ion kinetic energy and collision induced dissociation spectra.     

Etude du mécanisme de perte d'ethylène (propène) des N-ethyl (propyl) bromo-1,2,4-triazoles

C-bromo-1,2,4-trizole is generated in three different tautomeric forms by ethylene elimination from the N-ethyl compounds and these toutomes are shown to retain their structure prior to further fragmentation. The analysis of mass analysed ion kinetic energy and collision incuded dissociation spectra confrrms that ethylene loss proceeds by a tw-step mechanism with a five- (or four-) centred hydrogen transfer. The results show also that the 3- and 5-bromotriazole structures only are responsible for the mass spectrum of the parent heterocycle. Similar data are dicussed for the loss of propene from N-propylbromotriazoles.     

The reaction intermediate spectrum. A new type of experiment in tandem mass spectrometry

A new scan is described which responds to ions that are intermediates in the dissociation of a mass-selected parent ion (m_p) to give a mass-selected daughter ion (m_d). The scan gives a simple mass v. abundance output for ions which satisfy this condition. It is implemented here on a BEQQ hybrid mass spectrometer using, in sequence, collision-induced dissociation occurring at high energy in the first reaction region, and low-energy collisional activation in the collision quadrupole. The experiment provides information on reaction sequences not available from single scans of other types. In the several cases examined, it is demonstrated that, among many conceivable fragmentation routes connecting a parent ion with a particular fragment ion, only a few are significant. Examination of reaction intermediate spectra also appears to be a fruitful new approach to mechanistic questions, as illustrated by consideration of the behavior of several isomeric octanones. These new spectra also have analytical value: they show good signal-to-noise ratios and allow ready distinction between isobaric and isomeric ions. A comparison of the reaction intermediate spectrum with a daughter spectrum obtained by the B/E linked-scanning technique reveals the contributions of artifact peaks which result from poor parent ion mass resolution in the latter. Reaction intermediate spectra combine information from the daughter spectra of m_p and the parent spectra of m_d and, as a specified portion of this data domain, have unique characteristics.     

The gas phase structure of some protonated and ethylated aromatic amines

The fundamental processes of protonation and ethylation, occurring in a methane chemical ionization source, have been investigated for a variety of aromatic amines. The positions of protonation and ethylation on the substrate amines were determined by generating isomeric ions either by protonation of neutral ethyl substituted amines or by ethylation of the amines themselves. The product ions were investigated for structural differences via collision induced dissociation and subsequent analysis via mass analysed ion kinetic energy spectrometry. Similarities and differences between mass analysed ion kinetic energy/collision induced dissociation spectra of these isomeric ions were used to determine protonation and ethylation sites for imidazole, benzimidazole, indazole, pyrrole, pyridine and aniline.     

Site of protonation and bifunctional group interactions in α,ω-hydroxyalkylamines

Chemical ionization mass spectrometry and mass analyzed ion kinetic energy spectrometry in conjunction with collision induced dissociation are used to study the fragmentation behavior of a series of α,ω-hydroxyalkylamines. The difference between the ionic population present at equilibrium in the source, and that which is sampled under nonequilibrium conditions, is revealed in the striking differences observed in product distributions in the chemical ionization mass spectra and the mass analyzed ion kinetic energy spectra. The major fragmentations in the mass analyzed ion kinetic energy spectra, loss of NH₃ and H₂O, show large variations in intensity as a function of the chain length between the hydroxy and amino functionalities. These results are rationalized through analysis of the relevant thermochemical data.     

Fast atom bombardment mass spectrometric study of some unsaturated aryl C-glycosides

Fast atom bombardment (FAB), FAB mass-analysed ion kinetic energy (FAB MIKE) and collision-activated dissociation (FAB CAD-MIKE) mass spectra were obtained for two series of unsaturated anomeric aryl C-glycosides. These tandem mass spectrometric techniques allowed the differentiation of the anomers by analysing either the [M + H]⁺ ion or the [M + met]⁺ ion (met=Li, Na).     

Collision induced dissociations of ions produced in the field free regions of a triple sector mass spectrometer

Molecular or fragment ions can be prepared by a large variety of reactions in the field free regions of a mass spectrometer; these reactions involve spontaneous dissociation as well as collision induced excitation of singly or doubly charged precursors. Some typical examples show the different means which can lead to a given ion and how they can be studied by collisional activation. It also appears that in most cases the use of a triple sector (E/B/E) mass spectrometer facilitates these experiments as interfering artefacts are suppressed.     

Gas phase substitution under ammonia chemical ionization

Evidence for the isomerization of the [M + NH₄]⁺ adducts of nitrobenzene and triphenylnitrocyclohexenes to the isonitroso derivatives in the first field free region has been obtained. The isomerized adducts undergo successive loss of ?O and ?H or NH₃ to give ions corresponding to the substitution products. Mass analysed ion kinetic energy and collisionally activated dissociation/mass analysed ion kinetic energy data reveal that the adduct decomposes by similar pathways in the second field free region. In the ion source an addition elimination reaction and nucleophilic substitution contribute to the formation of the substituted product ion.     

The constant neutral linked magnetic field electric sector scan

A linked magnetic field-electric sector scan for which (B/E)\documentclass{article}\pagestyle{empty}\begin{document}$ \sqrt {1 - E} $\end{document} is constant selectively records first field free region metastable peaks representing loss of the same neutral fragment. The constant neutral metastable ion spectra produced by this scan should provide information about the presence and location of particular functional groups beyond that which is available from focused mass spectra. Constant neutral linked scans can be obtained consecutively with focused spectra and with B/E and B ²/E linked scans by simple extension of a computerized B-E scanning method developed previously.     

Characterizing protein glycosylation sites through higher‐energy C‐trap dissociation

Assigning glycosylation sites of glycoproteins and their microheterogeneity is still a very challenging analytical task despite the rapid advancements in mass spectrometry. It is shown here that glycopeptide ions can be fragmented efficiently using the higher‐energy C‐trap dissociation (HCD) feature of a linear ion trap orbitrap hybrid mass spectrometer (LTQ Orbitrap). An attractive aspect of this dissociation option is the generation of distinct Y1 ions (peptide+GlcNAc), thus allowing unequivocal assignment of N‐glycosylation sites of glycoproteins. The combination of the very informative collision‐induced dissociation spectra acquired in the linear ion trap with the distinct features of HCD offers very useful information aiding in the characterization of the glycosylation sites of glycoproteins. The HCD activation energy needed to obtain optimum Y1 ions was studied in terms of glycan structure and charge state, and size and structure of the peptide backbone. The latter appeared to be primarily dictating the needed HCD energy. The distinct Y1 ion formation in HCD facilitated an easy assignment of such an ion and its subsequent isolation and dissociation through multiple‐stage tandem mass spectrometry. The resulting MS³ spectrum of the Y1 ion facilitates database searching and de novo sequencing thus prompting the subsequent identification of the peptide backbone and associated glycosylation sites. Moreover, fragment ions formed by HCD are detected in the Orbitrap, thus overcoming the 1/3 cut‐off limitation that is commonly associated with ion trap mass spectrometers. As a result, in addition to the Y1 ion, the common glycan oxonium ions are also detected. The high mass accuracy offered by the LTQ Orbitrap mass spectrometer is also an attractive feature that allows a confident assignment of protein glycosylation sites and the microheterogeneity of such sites. Copyright © 2010 John Wiley & Sons, Ltd.     

Vibrational fine structure in the collisionally induced charge reversal and fragmentation of OH− ions

OH⁺ or OD⁺ ions were generated by collisionally induced charge reversal of the corresponding anions and then submitted to collisionally induced dissociation to H⁺ and D⁺. The resulting ion kinetic energy spectra showed multiple vibrational fine structure which were assigned to predissociations from the a ¹ Δ state. Unimolecular dissociation of OH⁺ and OD⁺ to yield O⁺ gave a single-valued kinetic energy release for predissociation of the ¹£ state.     

Mass spectral fragmentation pathways in RDX and HMX. A mass analyzed ion kinetic energy spectrometric/collisional induced dissociation study

A collisional induced dissociation study of 1,3,5-trinitro-1,3,5 triazacyclohexane (RDX) and 1,3,5,7-tetranitro-1,3,5,7-tetrazacyclooctane (HMX) was carried out using mass analyzed kinetic energy spectrometry. High resolution mass spectra and mass analyzed ion kinetic energy/collisional induced dissociation spectra of RDX and HMX were recorded in the electron impact, chemical ionization and negative ion chemical ionization modes. Fragmentation pathways of the compounds investigated were determined in all three modes of ionization. It was found that a major part of the fragment ions in RDX and HMX originate from formation of the aduct ions [M+NO]⁺ and [M+NO₂]⁺ in electron impact and chemical ionization, and from [M+NO]^? and [M+NO₂]^? in negative chemical ionization, followed by dissociation.     

An attempt to distinguish between the components of a mixture of isomeric fragment ions

The [C₇H₁₀NO₃]⁺ ion in the normal mass spectrum of 2-ethoxycarbonyl-5-oxo-2-pyrrolidinepropanoic acid was shown to correspond to a mixture of two isomeric structures. By decreasing the ionizing electron energy, the one containing a CH₂CH₂COOH group becomes dominant. The proportion of the concentrations of the two isomeric ions was calculated by comparing their daughter ion spectra (obtained by linked scan at constant B/E) with the analogous spectra of a derivative partially labelled by deuterium at the carboxyl and amide groups.