CH⋅⋅⋅N Hydrogen‐Bonding Interaction in 7‐Azaindole:CHX3 (X=F,Cl) Complexes

The C?H???Y (Y=hydrogen‐bond acceptor) interactions are somewhat unconventional in the context of hydrogen‐bonding interactions. Typical C?H stretching frequency shifts in the hydrogen‐bond donor C?H group are not only small, that is, of the order of a few tens of cm^?1, but also bidirectional, that is, they can be red or blue shifted depending on the hydrogen‐bond acceptor. In this work we examine the C?H???N interaction in complexes of 7‐azaindole with CHCl₃ and CHF₃ that are prepared in the gas phase through supersonic jet expansion using the fluorescence depletion by infra‐red (FDIR) method. Although the hydrogen‐bond acceptor, 7‐azaindole, has multiple sites of interaction, it is found that the C?H???N hydrogen‐bonding interaction prevails over the others. The electronic excitation spectra suggest that both complexes are more stabilized in the S₁ state than in the S₀ state. The C?H stretching frequency is found to be red shifted by 82 cm^?1 in the CHCl₃ complex, which is the largest redshift reported so far in gas‐phase investigations of 1:1 haloform complexes with various substrates. In the CHF₃ complex the observed C?H frequency is blue shifted by 4 cm^?1. This is at variance with the frequency shifts that are predicted using several computational methods; these predict at best a redshift of 8.5 cm^?1. This discrepancy is analogous to that reported for the pyridine‐CHF₃ complex [W. A. Herrebout, S. M. Melikova, S. N. Delanoye, K. S. Rutkowski, D. N. Shchepkin, B. J. van der Veken, J. Phys. Chem. A­ 2005 , 109, 3038], in which the blueshift is termed a pseudo blueshift and is shown to be due to the shifting of levels caused by Fermi resonance between the overtones of the C?H bending and stretching modes. The dissociation energies, (D₀), of the CHCl₃ and CHF₃ complexes are computed (MP2/aug‐cc‐pVDZ level) as 6.46 and 5.06 kcal mol^?1, respectively.     

Cation–Cation Pairing by NCH⋅⋅⋅O Hydrogen Bonds

The pairing of ions of opposite charge is a fundamental principle in chemistry, and is widely applied in synthesis and catalysis. In contrast, cation–cation association remains an elusive concept, lacking in supporting experimental evidence. While studying the structure and properties of 4‐oxopiperidinium salts [OC₅H₈NH₂]X for a series of anions X^? of decreasing basicity, we observed a gradual self‐association of the cations, concluding in the formation of an isolated dicationic pair. In 4‐oxopiperidinium bis(trifluoromethylsulfonyl)amide, the cations are linked by N? H???O?C hydrogen bonds to form chains, flanked by hydrogen bonds to the anions. In the tetra(perfluoro‐tert‐butoxy)aluminate salt, the anions are fully separated from the cations, and the cations associate pairwise by N? C? H???O?C hydrogen bonds. The compounds represent the first genuine examples of self‐association of simple organic cations based merely on hydrogen bonding as evidenced by X‐ray structure analysis, and provide a paradigm for an extension of this class of compounds.     

Influence of the Homopolar Dihydrogen Bonding CH⋅⋅⋅HC on Coordination Geometry: Experimental and Theoretical Studies

The reaction of the N‐thiophosphorylated thiourea (HOCH₂)(Me)₂CNHC(S)NHP(S)(OiPr)₂ (HL), deprotonated by the thiophosphorylamide group, with NiCl₂ leads to green needles of the pseudotetrahedral complex [Ni(L‐1,5‐S,S′)₂] ? 0.5 (n‐C₆H₁₄) or pale green blocks of the trans square‐planar complex trans‐[Ni(L‐1,5‐S,S′)₂]. The former complex is stabilized by homopolar dihydrogen C?H???H?C interactions formed by n‐hexane solvent molecules with the [Ni(L‐1,5‐S,S′)₂] unit. Furthermore, the dispersion‐dominated C?H??? H?C interactions are, together with other noncovalent interactions (C?H???N, C?H???Ni, C?H???S), responsible for pseudotetrahedral coordination around the Ni^II center in [Ni(L ‐1,5‐S,S′)₂] ? 0.5 (n‐C₆H₁₄).     

OH⋅⋅⋅N and CH⋅⋅⋅O Hydrogen Bonds Control Hydration of Pivotal Tropane Alkaloids: Tropinone⋅⋅⋅H2O Complex

The effect of monohydration in equatorial/axial isomerism of the common motif of tropane alkaloids is investigated in a supersonic expansion by using Fourier‐transform microwave spectroscopy. The rotational spectrum reveals the equatorial isomer as the dominant species in the tropinone???H₂O complex. The monohydrated complex is stabilized primarily by a moderate O?H???N hydrogen bond. In addition, two C?H???O weak hydrogen bonds also support this structure, blocking the water molecule and avoiding any molecular dynamics in the complex. The water molecule acts as proton donor and chooses the ternary amine group over the carbonyl group as a proton acceptor. The experimental work is supported by theoretical calculations; the accuracy of the B3LYP, M06‐2X, and MP2 methods is also discussed.     

Unusual Nitrile–Nitrile and Nitrile–Alkyne Coupling of FcCN and FcCCCN

The reactions of the Group 4 metallocene alkyne complexes, [Cp*₂M(η²‐Me₃SiC₂SiMe₃)] ( 1 a : M=Ti, 1 b : M=Zr, Cp*=η⁵‐pentamethylcyclopentadienyl), with the ferrocenyl nitriles, Fc?C?N and Fc?C?C?C?N (Fc=Fe(η⁵‐C₅H₅)(η⁵‐C₅H₄)), is described. In case of Fc?C?N an unusual nitrile–nitrile C?C homocoupling was observed and 1‐metalla‐2,5‐diaza‐cyclopenta‐2,4‐dienes ( 3 a , b ) were obtained. As the first step of the reaction with 1 b , the nitrile was coordinated to give [Cp*₂Zr(η²‐Me₃SiC₂SiMe₃)(N?C‐Fc)] ( 2 b ). The reactions with the 3‐ferrocenyl‐2‐propyne‐nitrile Fc?C?C?C?N lead to an alkyne–nitrile C?C coupling of two substrates and the formation of 1‐metalla‐2‐aza‐cyclopenta‐2,4‐dienes ( 4 a , b ). For M=Zr, the compound is stabilized by dimerization as evidenced by single‐crystal X‐ray structure analysis. The electrochemical behavior of 3 a , b and 4 a , b was investigated, showing decomposition after oxidation, leading to different redox‐active products.     

Streptococcal Hyaluronate Lyase Reveals the Presence of a Structurally Significant CH⋅⋅⋅O Hydrogen Bond

Carbon‐donated hydrogen bonds (CDHBs) are weak forms of hydrogen bonding (0.5–1.0 kcal mol^?1) that are difficult to detect, and thus their roles in the structure and functionality of chemical systems often go unrecognized. Utilizing a computational approach, the existence of a structurally significant CDHB in the medically relevant protein Streptococcus pneumoniae hyaluronate lyase (SpnHL) is affirmed. The structure of a tetrapeptide fragment model containing the CDHB was optimized with second‐order perturbation theory. From this, a CDHB with bond distance and angle consistent with previously discovered CDHBs and comparable to neighboring traditional HBs in the fragment model was found. The CDHB competes with another donor T253 OH, whereby the two alternate in strength between protein conformations, imbuing αHelix 3 appreciable flexibility. The CDHB seems to exist in spite of torsional and steric strain on the donor methyl group. It is postulated that the CDHB could aid in either counteracting the macrodipole of αHelix 3 or protecting the A249 CO from destabilizing interactions with the adjacent solvent. Employing the energy gradients from the optimization, the torque generated by the fragment model was computed, which accurately predicts the direction of rotation of αHelix 3 observed from experiment. A strongly correlated motion between αHelix 3 and αHelices 2, 4, and 5 was noted, which the interactions of the fragment model help drive by generating a torque much larger than necessary to rotate just αHelix 3. Considering these results, we conclude that CDHBs should be considered as possible beneficial components of chemical and biological phenomena.     

Elusive Silane–Alane Complex [SiH⋅⋅⋅Al]: Isolation,Characterization, and Multifaceted Frustrated Lewis Pair Type Catalysis

The super acidity of the unsolvated Al(C₆F₅)₃ enabled isolation of the elusive silane–alane complex [Si? H???Al], which was structurally characterized by spectroscopic and X‐ray diffraction methods. The Janus‐like nature of this adduct, coupled with strong silane activation, effects multifaceted frustrated‐Lewis‐pair‐type catalysis. When compared with the silane–borane system, the silane–alane system offers unique features or clear advantages in the four types of catalytic transformations examined in this study, including: ligand redistribution of tertiary silanes into secondary and quaternary silanes, polymerization of conjugated polar alkenes, hydrosilylation of unactivated alkenes, and hydrodefluorination of fluoroalkanes.     

Resonance Character of Copper/Silver/Gold Bonding in Small Molecule⋅⋅⋅MX (X=F,Cl, Br,CH3, CF3) Complexes

The resonance character of Cu/Ag/Au bonding is investigated in B???M?X (M=Cu, Ag, Au; X=F, Cl, Br, CH₃, CF₃; B=CO, H₂O, H₂S, C₂H₂, C₂H₄) complexes. The natural bond orbital/natural resonance theory results strongly support the general resonance‐type three‐center/four‐electron (3c/4e) picture of Cu/Ag/Au bonding, B:M?X?B⁺?M:X^?, which mainly arises from hyperconjugation interactions. On the basis of such resonance‐type bonding mechanisms, the ligand effects in the more strongly bound OC???M?X series are analyzed, and distinct competition between CO and the axial ligand X is observed. This competitive bonding picture directly explains why CO in OC???Au?CF₃ can be readily replaced by a number of other ligands. Additionally, conservation of the bond order indicates that the idealized relationship b_B???M+b_MX=1 should be suitably generalized for intermolecular bonding, especially if there is additional partial multiple bonding at one end of the 3c/4e hyperbonded triad.     

Probing the CH⋅⋅⋅π Weak Hydrogen Bond in Anesthetic Binding: The Sevoflurane–Benzene Cluster

Cooperativity between weak hydrogen bonds can be revealed in molecular clusters isolated in the gas phase. Here we examine the structure, internal dynamics, and origin of the weak intermolecular forces between sevoflurane and a benzene molecule, using multi‐isotopic broadband rotational spectra. This heterodimer is held together by a primary C? H???π hydrogen bond, assisted by multiple weak C? H???F interactions. The multiple nonbonding forces hinder the internal rotation of benzene around the isopropyl C? H bond in sevoflurane, producing detectable quantum tunneling effects in the rotational spectrum.     

Walking Metals in d8⋅⋅⋅d8 Hetero‐bimetallic Complexes: An Original Dynamic Phenomenon

In the course of our investigations on polymetallic complexes derived from 1,3‐bis(thiophosphinoyl)indene (Ind(Ph₂P?S)₂), we observed original fluxional behavior and report herein a joint experimental/computational study of this dynamic process. Starting from the indenylidene chloropalladate species [Pd{Ind(Ph₂P?S)₂}Cl]^? ( 1 ), the new Pd^II???Rh^I hetero‐bimetallic pincer complex [PdCl{Ind(Ph₂P?S)₂}Rh(nbd)] ( 2 ; nbd=2,5‐norbornadiene) was prepared. X‐ray crystallography and DFT calculations substantiate the presence of a d⁸???d⁸ interaction. According to multinuclear variable‐temperature NMR spectroscopic experiments, the pendant {Rh(nbd)} fragment of 2 readily shifts in solution at room temperature between the two edges of the SCS tridentate ligand. To assess the role of the pincer‐based polymetallic structure on this fluxional behavior, the related monometallic Rh complex [Rh{IndH(Ph₂P?S)₂}(nbd)] ( 3 ) was prepared. No evidence for a metal shift was observed in that case, even at high temperature, thus indicating that inplane pincer coordination to the Pd center plays a crucial role. The previously described Pd^II???Ir^I bimetallic complex 4 exhibited fluxional behavior in solution, but with a significantly higher activation barrier than 2 . This finding demonstrates the generality of this metal‐shift process and the strong influence of the involved metal centers on the associated activation barrier. DFT calculations were performed to shed light onto the mechanism of such metal‐shift processes and to identify the factors that influence the associated activation barriers. Significantly different pathways were found for bimetallic complexes 2 and 4 on one hand and the monometallic complex 3 on the other hand. The corresponding activation barriers predicted computationally are in very good agreement with the experimental observations.     

Self‐Assembly and (Hydro)gelation Triggered by Cooperative π–π and Unconventional CH⋅⋅⋅X Hydrogen Bonding Interactions

Weak C? H???X hydrogen bonds are important stabilizing forces in crystal engineering and anion recognition in solution. In contrast, their quantitative influence on the stabilization of supramolecular polymers or gels has thus far remained unexplored. Herein, we report an oligophenyleneethynylene (OPE)‐based amphiphilic Pt^II complex that forms supramolecular polymeric structures in aqueous and polar media driven by π–π and different weak C‐H???X (X=Cl, O) interactions involving chlorine atoms attached to the Pt^II centers as well as oxygen atoms and polarized methylene groups belonging to the peripheral glycol chains. A collection of experimental techniques (UV/Vis, 1D and 2D NMR, DLS, AFM, SEM, and X‐Ray diffraction) demonstrate that the interplay between different weak noncovalent interactions leads to the cooperative formation of self‐assembled structures of high aspect ratio and gels in which the molecular arrangement is maintained in the crystalline state.     

Cooperativity between the Halogen Bond and the Hydrogen Bond in H3N⋅⋅⋅XY⋅⋅⋅HF Complexes (X,Y=F,Cl, Br)

Ab initio calculations are used to provide information on H₃N???XY???HF triads (X, Y=F, Cl, Br) each having a halogen bond and a hydrogen bond. The investigated triads include H₃N???Br₂‐HF, H₃N???Cl₂???HF, H₃N???BrCI???HF, H₃N???BrF???HF, and H₃N???ClF???HF. To understand the properties of the systems better, the corresponding dyads are also investigated. Molecular geometries, binding energies, and infrared spectra of monomers, dyads, and triads are studied at the MP2 level of theory with the 6‐311++G(d,p) basis set. Because the primary aim of this study is to examine cooperative effects, particular attention is given to parameters such as cooperative energies, many‐body interaction energies, and cooperativity factors. The cooperative energy ranges from ?1.45 to ?4.64 kcal mol^?1, the three‐body interaction energy from ?2.17 to ?6.71 kcal mol^?1, and the cooperativity factor from 1.27 to 4.35. These results indicate significant cooperativity between the halogen and hydrogen bonds in these complexes. This cooperativity is much greater than that between hydrogen bonds. The effect of a halogen bond on a hydrogen bond is more pronounced than that of a hydrogen bond on a halogen bond.     

Heterolytic Cleavage of Hydrogen by an Iron Hydrogenase Model: An Fe‐H⋅⋅⋅H‐N Dihydrogen Bond Characterized by Neutron Diffraction

Hydrogenase enzymes in nature use hydrogen as a fuel, but the heterolytic cleavage of H? H bonds cannot be readily observed in enzymes. Here we show that an iron complex with pendant amines in the diphosphine ligand cleaves hydrogen heterolytically. The product has a strong Fe‐H???H‐N dihydrogen bond. The structure was determined by single‐crystal neutron diffraction, and has a remarkably short H???H distance of 1.489(10) Å between the protic N‐H^δ+ and hydridic Fe‐H^δ? part. The structural data for [CpFe H (P^tBu₂N^tBu₂ H )]⁺ provide a glimpse of how the H? H bond is oxidized or generated in hydrogenase enzymes. These results now provide a full picture for the first time, illustrating structures and reactivity of the dihydrogen complex and the product of the heterolytic cleavage of H₂ in a functional model of the active site of the [FeFe] hydrogenase enzyme.     

Tuning the Magnetization Dynamic Properties of Nd⋅⋅⋅Fe and Nd⋅⋅⋅Co Single‐Molecular Magnets by Introducing 3 d–4 f Magnetic Interactions

By using paramagnetic [Fe(CN)₆]^3? anions in place of diamagnetic [Co(CN)₆]^3? anions, two field‐induced mononuclear single‐molecular magnets, [Nd(18‐crown‐6)(H₂O)₄][Co(CN)₆] ? 2 H₂O ( 1 ) and [Nd(18‐crown‐6)(H₂O)₄][Fe(CN)₆] ? 2 H₂O ( 2 ), have been synthesized and characterized. Single‐crystal X‐ray diffraction analysis revealed that compounds 1 and 2 were ionic complexes. The Nd^III ions were located inside the cavities of the 18‐crown‐6 ligands and were each bound by four water molecules on either side of the crown ether. Magnetic investigations showed that these compounds were both field‐induced single‐molecular magnets. By comparing the slow relaxation behaviors of compounds 1 and 2 , we found significant differences between the direct and Raman processes for these two complexes, with a stronger direct process in compound 2 at low temperatures. Complete active space self‐consistent field (CASSCF) calculations were also performed on two [Nd(18‐crown‐6)(H₂O)₄]³⁺ fragments of compounds 1 and 2 . Ab initio calculations showed that the magnetic anisotropies of the Nd^III centers in complexes 1 and 2 were similar to each other, which indicated that the difference in relaxation behavior was not owing to the magnetic anisotropy of Nd^III. Our analysis showed that the magnetic interaction between the Nd^III ion and the low‐spin Fe^III ion in complex 2 played an important role in enhancing the direct process and suppressing the Raman process of the single‐molecular magnet.     

Dihydrogen Catalysis of the Reversible Formation and Cleavage of CH and NH Bonds of Aminopyridinate Ligands Bound to (η5‐C5Me5)IrIII

This study focuses on a series of cationic complexes of iridium that contain aminopyridinate (Ap) ligands bound to an (η⁵‐C₅Me₅)Ir^III fragment. The new complexes have the chemical composition [Ir(Ap)(η⁵‐C₅Me₅)]⁺, exist in the form of two isomers ( 1⁺ and 2⁺ ) and were isolated as salts of the BAr_F^? anion (BAr_F=B[3,5‐(CF₃)₂C₆H₃]₄). Four Ap ligands that differ in the nature of their bulky aryl substituents at the amido nitrogen atom and pyridinic ring were employed. In the presence of H₂, the electrophilicity of the Ir^III centre of these complexes allows for a reversible prototropic rearrangement that changes the nature and coordination mode of the aminopyridinate ligand between the well‐known κ²‐N,N′‐bidentate binding in 1⁺ and the unprecedented κ‐N,η³‐pseudo‐allyl‐coordination mode in isomers 2⁺ through activation of a benzylic C?H bond and formal proton transfer to the amido nitrogen atom. Experimental and computational studies evidence that the overall rearrangement, which entails reversible formation and cleavage of H?H, C?H and N?H bonds, is catalysed by dihydrogen under homogeneous conditions.     

Regioregular Synthesis of Azaborine Oligomers and a Polymer with a syn Conformation Stabilized by NH⋅⋅⋅π Interactions

The regioregular synthesis of the first azaborine oligomers and a corresponding conjugated polymer was accomplished by Suzuki–Miyaura coupling methods. An almost perfectly coplanar syn arrangement of the heterocycles was deduced from an X‐ray crystal structure of the dimer, which also suggested that N? H???π interactions play an important role. Computational studies further supported these experimental observations and indicated that the electronic structure of the longer azaborine oligomers and polymer resembles that of poly(cyclohexadiene) more than poly(p‐phenylene). A comparison of the absorption and emission properties of the polymer with those of the oligomers revealed dramatic bathochromic shifts upon chain elongation, thus suggesting highly effective extension of conjugation.     

An insight into CH···N hydrogen bond and stability of the complexes formed by trihalomethanes with ammonia and its monohalogenated derivatives

A theoretical study of the C?H···N hydrogen bond in the interactions of trihalomethanes CHX₃ (X = F, Cl, Br) with ammonia and its halogen derivatives NH₂Y (Y = F, Cl, Br) has been carried out thoroughly. The complexes are quite stable, and their stability increases in going from CHF₃ to CHCl₃ then to CHBr₃ when Y keeps unchanged. With the same CHX₃ proton donor, enhancement of the gas phase basicity of NH₂Y strengthens stability of the CHX₃···NH₂Y complex. The C?H···N hydrogen bond strength is directly proportional to the increase of proton affinity (PA) at N site of NH₂Y and the decrease of deprotonation enthalpy (DPE) of C?H bond in CHX₃. The CHF₃ primarily appears to favor blue shift while the red‐shift is referred to the CHBr₃. The blue‐ or red‐shift of CHCl₃ strongly depends on PA at N site of NH₂Y. We suggest the ratio of DPE/PA as a factor to predict which type of hydrogen bond is observed upon complexation. The SAPT2+ results show that all C?H···N interactions in the complexes are electrostatically driven regardless of the type of hydrogen bond, between 48% and 61% of the total attractive energy, and partly contributed by both induction and dispersion energies.     

Understanding the Mechanisms of Unusually Fast HH,CH,and CC Bond Reductive Eliminations from Gold(III) Complexes

Carbon–carbon bond reductive elimination from gold(III) complexes are known to be very slow and require high temperatures. Recently, Toste and co‐workers have demonstrated extremely rapid C?C reductive elimination from cis‐[AuPPh₃(4‐F‐C₆H₄)₂Cl] even at low temperatures. We have performed DFT calculations to understand the mechanistic pathway for these novel reductive elimination reactions. Direct dynamics calculations inclusive of quantum mechanical tunneling showed significant contribution of heavy‐atom tunneling (>25 %) at the experimental reaction temperatures. In the absence of any competing side reactions, such as phosphine exchange/dissociation, the complex cis‐[Au(PPh₃)₂(4‐F‐C₆H₄)₂]⁺ was shown to undergo ultrafast reductive elimination. Calculations also revealed very facile, concerted mechanisms for H?H, C?H, and C?C bond reductive elimination from a range of neutral and cationic gold(III) centers, except for the coupling of sp³ carbon atoms. Metal–carbon bond strengths in the transition states that originate from attractive orbital interactions control the feasibility of a concerted reductive elimination mechanism. Calculations for the formation of methane from complex cis‐[AuPPh₃(H)CH₃]⁺ predict that at ?52 °C, about 82 % of the reaction occurs by hydrogen‐atom tunneling. Tunneling leads to subtle effects on the reaction rates, such as large primary kinetic isotope effects (KIE) and a strong violation of the rule of the geometric mean of the primary and secondary KIEs.     

Nitrene Insertion into CC and CH Bonds of Diamide Diimine Ligands Ligated to Chromium and Iron

The impact of redox non‐innocence (RNI) on chemical reactivity is a forefront theme in coordination chemistry. A diamide diimine ligand, [{‐CH?N(1,2‐C₆H₄)NH(2,6‐iPr₂C₆H₃)}₂]ⁿ (n=0 to ?4), (dadi)ⁿ, chelates Cr and Fe to give [(dadi)M] ([ 1 Cr(thf)] and [ 1 Fe]). Calculations show [ 1 Cr(thf)] (and [ 1 Cr]) to have a d⁴ Cr configuration antiferromagnetically coupled to (dadi)^2?*, and [ 1 Fe] to be S=2. Treatment with RN₃ provides products where RN is formally inserted into the C? C bond of the diimine or into a C? H bond of the diimine. Calculations on the process support a mechanism in which a transient imide (imidyl) aziridinates the diimine, which subsequently ring opens.