Is gluconate a good model for isosaccharinate in uranyl(VI) chemistry? A DFT study

The geometries, relative energies and spectroscopic properties of a range of α-isosaccharinate complexes of uranyl(VI) are studied computationally using ground state and time-dependent density functional theory. The effect of pH is accommodated by varying the number of water and hydroxide ligands accompanying isosaccharinate in the equatorial plane of the uranyl unit. For 1 : 1 complexes, the calculated uranyl ν(asym) stretching frequency decreases as pH increases, in agreement with previous experimental data. Three different isosaccharinate chelating modes are studied. Their relative energies are found to be pH dependent, although the energetic differences between them are not sufficient to exclude the possibility of multiple speciation. At higher pH, the uranyl-ligand interactions are dominated more by the equatorial OH(-) than by the organic ligands. Calculated electronic excitation energies support experiment in finding the lowest energy transitions to be ligand → metal charge transfer. (13)C NMR chemical shifts are calculated for the coordinated isosaccharinate in the high pH mimics, and show good agreement with experimental data, supporting the experimental conclusion that the five-membered chelate ring is favoured at high pH. The effect of increasing the isosaccharinate concentration is modelled by calculating 1 : 2 and 1 : 3 uranyl : α-isosaccharinate complexes. Comparison of the results of the present study with those from our closely related investigation of uranyl(VI)-D-gluconate complexes (Dalton Transactions 40 (2011) 11248) reveals strong similarities in structure, bonding, coordination geometry and electronic excitations, but also differences in ΔG for key ligand replacement reactions, suggesting that caution should be exercised when using gluconate as a thermodynamic model for isosaccharinate in uranyl(vi) chemistry.     

Comparative study of uranyl(VI) and -(V) carbonato complexes in an aqueous solution

Electrochemical, complexation, and electronic properties of uranyl(VI) and -(V) carbonato complexes in an aqueous Na2CO3 solution have been investigated to define the appropriate conditions for preparing pure uranyl(V) samples and to understand the difference in coordination character between UO22+ and UO2+. Cyclic voltammetry using three different working electrodes of platinum, gold, and glassy carbon has suggested that the electrochemical reaction of uranyl(VI) carbonate species proceeds quasi-reversibly. Electrolysis of UO22+ has been performed in Na2CO3 solutions of more than 0.8 M with a limited pH range of 11.7 < pH < 12.0 using a platinum mesh electrode. It produces a high purity of the uranyl(V) carbonate solution, which has been confirmed to be stable for at least 2 weeks in a sealed glass cuvette. Extended X-ray absorption fine structure (EXAFS) measurements revealed the structural arrangement of uranyl(VI) and -(V) tricarbonato complexes, [UO2(CO3)3]n- [n = 4 for uranyl(VI), 5 for uranyl(V)]. The bond distances of U-Oax, U-Oeq, U-C, and U-Odist are determined to be 1.81, 2.44, 2.92, and 4.17 A for the uranyl(VI) complex and 1.91, 2.50, 2.93, and 4.23 A for the uranyl(V) complex, respectively. The validity of the structural parameters obtained from EXAFS has been supported by quantum chemical calculations for the uranyl(VI) complex. The uranium LI- and LIII-edge X-ray absorption near-edge structure spectra have been interpreted in terms of electron transitions and multiple-scattering features.     

The mechanism of water exchange in AmO2(H2O)5(2+) and in the isoelectronic UO2(H2O)5(+) and NpO2(H2O)5(2+) complexes as studied by quantum chemical methods

The water exchange mechanism for AmO2(H2O)52+ and the isoelectronic UO2(H2O)5+ and NpO2(H2O)52+ ions has been investigated using quantum chemical methods and compared to previous findings in the uranyl(VI) system (Vallet, V. et al. J. Am. Chem. Soc. 2001, 123, 11999). There are substantial and predictable changes in the geometry and preferred exchange pathways between uranyl(V) and the different actinyl(VI) complexes. The smaller charge on the uranyl(V) center makes the dissociative pathway more favorable than the associative/interchange pathways in the actinyl(VI) systems.     

A combined experimental and theoretical approach for structural study on a new cinnamoyl derivative of 2-acetyl-1,3-indandione and its metal(II) complexes

The synthesis, structure and spectral properties of a new cinnamoyl derivative of 2-acetyl-1,3-indandione (2AID), p-fluoro-cinnamoyl-1,3-indandione, LH and its metal(II) complexes with Cu(II), Zn(II) and Cd(II), are described. In order to verify the molecular structure of the free ligand and its metal complexes, model geometries based on the spectroscopic data were optimized using quantum chemical methods. The experimental spectroscopic data (IR and NMR) of the ligand, LH, complemented by the calculated ones, show that it exists in the exocyclic enolic form in the gas phase, solution and solid state. Good quality single crystals of Cd(II) complex were obtained from a DMSO solution and were studied by means of single-crystal X-ray diffraction. The data show bidentate coordination of the ligand and two DMSO molecules coordinated to the metal centre, thus forming a complex with octahedral geometry. On the contrary, the spectroscopic data on the amorphous samples indicate a square planar geometry of the Cu(II) complex and distorted octahedral geometry for Zn(II) and Cd(II) complexes with two water molecules coordinated to the metal centre. The used quantum chemical method for structure optimization of the transition metal complexes, B3LYP/LANL2DZ, shows very good agreement with the crystallographic data and, therefore, was also employed for structural determination for the non-crystalline complexes. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Interaction of uranium(VI) with lipopolysaccharide

Bacteria have a great influence on the migration behaviour of heavy metals in the environment. Lipopolysaccharides form the main part of the outer membrane of Gram-negative bacteria. We investigated the interaction of the uranyl cation (UO2(2+)) with lipopolysaccharide (LPS) from Pseudomonas aeruginosa by using potentiometric titration and time-resolved laser-induced fluorescence spectroscopy (TRLFS) over a wide pH and concentration range. Generally, LPS consists of a high density of different functionalities for metal binding such as carboxyl, phosphoryl, amino and hydroxyl groups. The dissociation constants and corresponding site densities of these functional groups were determined using potentiometric titration. The combination of both methods, potentiometry and TRLFS, show that at an excess of LPS uranyl phosphoryl coordination dominates, whereas at a slight deficit on LPS compared to uranyl, carboxyl groups also become important for uranyl coordination. The stability constants of one uranyl carboxyl complex and three different uranyl phosphoryl complexes and the luminescence properties of the phosphoryl complexes are reported.     

Recent developments in computational actinide chemistry

This review describes recent computational investigations into the electronic and geometric structures of molecular actinide compounds. Following brief introductions to (i) the effects of relativity in chemistry and (ii) ab initio and density functional quantum chemical methods, four areas of contemporary research are discussed. These are pi backbonding in uranium complexes, the geometric structures of bis benzene actinide compounds, the valence electronic structure of the uranyl ion, and the inverse trans influence in pseudo-octahedral [AnOX5]n-. Comparisons are made with experimental studies, and similarities and differences between d- and f-block chemistry are highlighted.     

Theoretical exploration of uranyl complexes of a designed polypyrrolic macrocycle: structure/property effects of hinge size on Pacman-shaped complexes

A polypyrrolic macrocycle with naphthalenyl linkers between the N(4)-donor compartments (L(2)) was designed theoretically according to its experimentally-known analogues with phenylenyl (L(1)) and anthracenyl (L(3)) linkers. The uranyl and bis(uranyl) complexes formed by this L(2) ligand have been examined using scalar-relativistic density functional theory. The calculated structural properties of the mononuclear uranyl-L(2) complexes are similar to those of their L(1) counterparts. The binuclear L(2) complexes exhibit a butterfly-like bis(uranyl) core in which a linear uranyl is coordinated in a side-by-side fashion to a cis-uranyl unit. The calculated U[double bond, length as m-dash]O bond orders in the uranyl-L(2) complexes indicate partial triple bonding character with the only exceptions being the U-O(endo) bonds in the U(2)O(4) core of the butterfly-shaped binuclear complexes. Overall, the bond orders agree with the trends in the calculated U[double bond, length as m-dash]O stretching vibrational frequencies. Regarding the bis(uranyl) L(1), L(2) and L(3) complexes, the phenylenyl-hinge L(1) complexes adopt a butterfly-like and a T-shaped isomer in the oxidation state of U(vi), but only a butterfly-like one in the U(v), which differs from that of the naphthalenyl-hinge L(2) complexes as well as the lateral twisted structure of the anthracenyl-hinge L(3) complexes. The intramolecular cation-cation interactions are found in the L(1) and L(2) complexes, but are absent in the L(3) complexes. Finally, using model uranyl transfer reactions from the L(1) complexes, the formation of the mononuclear L(2) complexes is calculated to be a slightly endothermic process. This suggests that it should be possible to synthesize the L(2) complexes using similar protocols as employed for the L(1) complexes.     

Interactions between bioactive ferulic acid and fumed silica by UV–vis spectroscopy, FT-IR, TPD MS investigation and quantum chemical methods

The interactions of bioactive ferulic acid with fumed silica were studied by UV/vis spectroscopy, FT-IR, TPD MS techniques and quantum chemical methods. It was found that surface complexes may form through phenol or carboxyl group of ferulic acid depending on its coverage value. The structure of surface complexes and mechanisms of the ferulic acid chemosorption on the silica surface are discussed. The kinetic parameters of the chemical reactions on silica surface are calculated. The mechanisms of thermal transformations of the ferulic chemosorbed surface complexes are proposed.     

Stabilization of dinitrosyl iron complexes under matrix isolation conditions: solvent and polymer effects on the synthesis of composites based on poly(methyl methacrylate) and iron complexes [Fe<Subscript>2</Subscript>(μ-NCS-R)<Subscript>2</Subscript>(NO)<Subscript>4</Subscript>]

Homogeneous composites based on poly(methyl methacrylate) and its copolymers with methacrylic acid and on the nitrosyl iron complexes with 2-mercaptobenzimidazole and 2-mercaptobenzthiazole were synthesized. An analysis of the experimental data obtained by the methods of small-angle X-ray diffraction and SQUID magnetometry in combination with the results of quantum chemical calculations showed that the nitrosyl complexes did not retain their initial binuclear structure under the matrix isolation conditions: some complexes decompose to mononuclear ones. The percentage ratio of the dimers and monomers depends on the fraction of the methacrylic acid copolymer in the polymeric matrix and is almost independent of the type of thiol ligand in the iron complex.     

Complexes of Uranyl Nitrate with 2,6‐Pyridinedicarboxamides: Synthesis,Crystal Structure,and DFT Study

Two complexes of uranyl nitrate with N,N,N′,N′‐tetrabutyl‐2,6‐pyridinedicarboxamide (TBuDPA) and N,N′‐diethyl‐N,N′‐diphenyl‐2,6‐pyridinedicarboxamide (EtPhDPA) were synthesized and studied. The complex of tetraalkyl‐2,6‐pyridinedicarboxamide with metal nitrate was synthesized for the first time. XRD analysis revealed the different type of complexation: a 1:1 metal:ligand complex for EtPhDPA and complex with polymeric structure for TBuDPA. The quantum chemical calculations (DFT) confirm that both ligands form the most stable complexes that match the minimal values pre‐organization energy of the ligands.     

Stoichiometry and structure of uranylVI hydroxo dimer and trimer complexes in aqueous solution

We studied the structure and stoichiometry of aqueous uranylVI hydroxo dimers and trimers by spectroscopic (EXAFS, FTIR, UV-vis) and quantum chemical (DFT) methods. FTIR and UV-vis spectroscopy were used for the speciation of uranyl complexes in aqueous solution. DFT calculations show that (UO2)2(OH)22+ has two bridging hydroxo groups with a U-U distance of 3.875 A. This result is in good agreement with EXAFS, where a U-U distance of 3.88 A was found. For the hydroxo trimer complex, DFT calculations show that the species (UO2)3(O)(OH)3+ with oxo bridging in the center is energetically favored in comparison to its stoichiometric equivalent (UO2)3(OH)5+. This is again in line with the EXAFS result, where a shorter U-U distance of 3.81-3.82 A and evidence for oxo bridging in the center were found. Several stable intermediates which lie several tens of kJ/mol above that of (UO2)3(O)(OH)3+ were identified, and their structures, energies, and intramolecular proton-transfer reaction are discussed.     

Performance of group additivity methods for predicting the stability of uranyl complexes

Herein, we investigated the viability of two group additivity methods for predicting Gibbs energies of a set of uranyl complexes. In first place, we proved that both density functional theory (DFT)-based methods and Serezhkin's stereoatomic model provide equivalent answers in terms of stability. Moreover, we proposed a novel methodology based on Mayer's population analysis for estimating Serezhkin's empirical parameters theoretically. On the other hand, we showed that Cheong and Persson linear algebra methodology can be successfully applied to uranyl complexes, and analyzed its performance in connection with the chemical nature of the compounds employed in the model.     

DFT studies of uranyl acetate,carbonate, and malonate,complexes in solution

The aim of this work is to demonstrate that theoretical chemistry can be used as a complementary tool in determining geometric parameters of a number of uranyl complexes in solution, which are not observable by experimental methods. In addition, we propose plausible structures with partial geometric data from experimental results. A gradient corrected DFT methodology with relativistic effects is used employing a COSMO solvation model. The theoretical calculations show good agreement with experimental X-ray and EXAFS data for the triacetato-dioxo-uranium(VI) and tricarbonato-dioxo-uranium(VI) complexes and are used to assign possible geometries for dicalcium-tricarbonato-dioxo-uranium(VI) and malonato-dioxo-uranium(VI) complexes. The results of this exercise indicate that carbonate bonding in these complexes is mainly bidentate and that hydroxo bridging plays a critical role in the stabilization of the polynuclear uranyl complexes.     

The coordination of uranyl in water: a combined quantum chemical and molecular simulation study

The coordination environment of uranyl in water has been studied using a combined quantum mechanical and molecular dynamics approach. Multiconfigurational wave function calculations have been performed to generate pair potentials between uranyl and water. The quantum chemically determined energies have been used to fit parameters in a polarizable force field with an added charge transfer term. Molecular dynamics simulations have been performed for the uranyl ion and up to 400 water molecules. The results show a uranyl ion with five water molecules coordinated in the equatorial plane. The U-O(H(2)O) distance is 2.40 A, which is close to the experimental estimates. A second coordination shell starts at about 4.7 A from the uranium atom. No hydrogen bonding is found between the uranyl oxygens and water. Exchange of waters between the first and second solvation shell is found to occur through a path intermediate between association and interchange. This is the first fully ab initio determination of the solvation of the uranyl ion in water.     

(67)Zn NMR chemical shifts and electric field gradients in zinc complexes: a quantum chemical investigation

We have used quantum chemical methods to predict 67Zn NMR chemical shifts as well as quadrupole coupling constants (CQ) in a series of biomimetic and inorganic zinc complexes. The 67Zn chemical shifts are predicted with an R2 = 0.975, corresponding to a 24.3 ppm or 6.7% error over the entire 365 ppm 67Zn chemical shift range. The 67Zn CQ values are predicted with an R2 = 0.991, corresponding to a 1.17 MHz or 3.0% error over the entire 38.75 MHz range. The 67Zn NMR shifts in a series of complexes containing N,O ligands are, in general, highly correlated with the number of oxygen ligands. The ability to compute 67Zn NMR shifts as well as CQ values opens up the possibility of using both of these properties in structure determination or refinement in proteins.     

Spectral and thermal studies of 4-(1H-pyrazolo (3,4-d) pyrimidin-4-ylazo) benzene-1,3-diol complexes of cobalt(II), nickel(II) and copper(II)

4-(1H-Pyrazolo (3,4-d) pyrimidin-4-ylazo) benzene-1,3-diol was synthesized and characterized by various spectral and analytical techniques. Semiempirical quantum calculations using the AM1 method have been performed in order to evaluate the geometry and electronic structure of the title azodye in the ground state. The complex formation between Co(II), Ni(II) and Cu(II) ions and the title azodye was studied conductometrically and spectrophotometrically. The spectrophotometric determination of the title metal ions and titration using EDTA are reported. Co(II), Ni(II) and Cu(II) complexes of the title azodye have been synthesized and characterized by elemental analysis, conductivity, magnetic susceptibility, IR, UV-Vis and thermal analysis (TGA and DTA).The spectral and magnetic data suggested the octahedral geometry for Co(II) and Ni(II) complexes while Cu(II) complexes have square planar geometry. The thermal studies confirmed the chemical formulations of the title complexes. The thermal degradation takes place in two or three steps depending on the type of the metal and the geometry of the complexes. The kinetics of the decomposition was examined by using Coats-Redfern relation. The activation energies and other activation parameters (DeltaH, DeltaS and DeltaG) were computed and related to the bonding and stereochemistry of the complexes.     

Potentiometric and spectroscopic study of uranyl complexation with humic acids

By potentiometric study using a specific uranyl ion-selective electrode, the formation of 1:1 and 1:2 (metal:ligand) complexes of uranyl with various humic acids (HAs) was found. The conditional stability constants were calculated using the LETAGROP-ETITR program. Possible structures of the complexes are proposed. Stability constants were found to be rather high indicating that immobilized HA can be used, for example, to remove traces of uranyl from waste waters.     

Photochemistry of f-element ions

Published data on photochemical reactions of f-element compounds, namely, uranyl ion and lanthanide and actinide ions, are surveyed and analyzed. The types of reactions of photoexcited ions, reaction mechanisms, and analytical applications of the photochemical methods for the separation, isolation, and determination of f-elements are considered.     

Mechanism of Diiron Hydrogenase Complexes Controlled by Nature of Bridging Dithiolate Ligand

Bio-inorganic complexes inspired by hydrogenase enzymes are designed to catalyze the hydrogen evolution reaction (HER). A series of new diiron hydrogenase mimic complexes with one or two terminal tris(4-methoxyphenyl)phosphine and different μ-bridging dithiolate ligands and show catalytic activity towards electrochemical proton reduction in the presence of weak and strong acids. A series of propane- and benzene-dithiolato-bridged complexes was synthesized, crystallized, and characterized by various spectroscopic techniques and quantum chemical calculations. Their electrochemical properties as well as the detailed reaction mechanisms of the HER are elucidated by density functional theory (DFT) methods. The nature of the μ-bridging dithiolate is critically controlling the reaction and performance of the HER of the complexes. In contrast, terminal phosphine ligands have no significant effects on redox activities and mechanism. Mono- or di-substituted propane-dithiolate complexes afford a sequential reduction (electrochemical; E) and protonation (chemical; C) mechanism (ECEC), while the μ-benzene dithiolate complexes follow a different reaction mechanism and are more efficient HER catalysts.