DFT study of Co-C bond cleavage in the neutral and one-electron-reduced alkyl-cobalt(III) phthalocyanines

Density functional theory (DFT) has been applied to the analysis of the structural and electronic properties of the alkyl-cobalt(III) phthalocyanine complexes, [CoIIIPc]-R (Pc = phthalocyanine, R = Me or Et), and their pyridine adducts. The BP86/6-31G(d) level of theory shows good reliability for the optimized axial bond lengths and bond dissociation energies (BDEs). The mechanism of the reductive cleavage was probed for the [CoIIIPc]-Me complex which is known as a highly effective methyl group donor. In the present analysis, which follows a recent study on the reductive Co-C bond cleavage in methylcobalamin (J. Phys. Chem. B 2007, 111, 7638-7645), it is demonstrated that addition of an electron and formation of the pi-anion radical [CoIII(Pc*)]-Me- significantly lowers the energetic barrier required for homolytic Co-C bond dissociation. Such BDE lowering in [CoIII(Pc*)]-Me- arises from the involvement of two electronic states: upon electron addition, a quasi-degenerate pi*Pc state is initially formed, but when the cobalt-carbon bond is stretched, the unpaired electron moves to a sigma*Co-C state and the final cleavage involves the three-electron (sigma)2(sigma*)1 bond. As in corrin complexes, the pi*Pc-sigma*Co-C states crossing does not take place at the equilibrium geometry of [CoIII(Pc*)]-Me- but only when the Co-C bond is stretched to approximately 2.3 A. The DFT computed Co-C BDE of 23.3 kcal/mol in the one-electron-reduced phthalocyanine species, [CoIII(Pc*)]-Me-, is lowered by approximately 37% compared to the neutral Py-[CoIIIPc]-Me complex where BDE = 36.8 kcal/mol. A similar comparison for the corrin-containing complexes shows that a DFT computed BDE of 20.4 kcal/mol for [CoIII(corrin*)]-Me leads to approximately 45% bond strength reduction, in comparison to 37.0 kcal/mol for Im-[CoIII(corrin)]-Me+. These results suggest some preference by the alkylcorrinoids for the reductive cleavage mechanism.     

Photolysis of methylcobalamin: identification of the relevant excited states involved in Co-C bond scission

The relevant excited states involved in the photolysis of methylcobalamin (MeCbl) have been examined by means of time-dependent density functional theory (TD-DFT). The low-lying singlet and triplet excited states have been calculated along the Co-C bond at the TD-DFT/BP86/6-31g(d) level of theory in order to investigate the dissociation process of MeCbl. These calculations have shown that the photodissociation is mediated by the repulsive 3(sigmaCo-C --> sigma*Co-C) triplet state. The key metastable photoproduct involved in Co-C bond photolysis was identified as an S1 state having predominantly dCo --> pi*corrin metal-ligand charge transfer (MLCT) character.     

Carbon-cobalt bond distance and bond cleavage in one-electron reduced methylcobalamin: a failure of the conventional DFT method

Geometry optimizations at the HF, B3LYP, and CASSCF levels of electronic structure theory have been performed for methylcobalamin (MeCbl) model compounds in both the Co(III) (MeCbl(III)) and Co(II) (MeCbl(II)) formal oxidation states. Since the HOMO-LUMO and C-Co sigma-sigma MO gaps are significantly smaller in the MeCbl(II) compounds compared with MeCbl(III), a pseudo-Jahn Teller effect is possible. CASSCF calculations show that there is strong coupling between C-Co sigma-sigma MOs for the MeCbl(II) models leading to strong state mixing with significant total charge density transfer (approximately 0.4 e-), mainly from the C-Co sigma MO to C-Co sigma MO (approximately 0.3 e-). CASSCF(9:7) calculations show that the strong state mixing leads to an increase in the C-Co bond length for MeCbl(II) model compounds from 1.969 A (DFT and HF calculations) to 2.164 A in the base-on MeCbl(II) model and from 1.938 A to 2.144 A in the base-off MeCbl(II) model. Concomitantly, the Co-N axial bond length increases from 2.121 A (DFT) to 2.344 A in the CASSCF calculation. This coupling interaction between states can be used to explain the much lower Co-C bond dissociation enthalpy and much faster bond cleavage rate for the one-electron reduced methylcobalamin radical anion compared to MeCbl(III). It may also be important for axial bond distances in other Co(II) compounds.     

Near-ultraviolet photodissociation of thiophenol

H(D) Rydberg atom photofragment translational spectroscopy has been used to investigate the dynamics of H(D) atom loss C6H5SH(C6H5SD) following excitation at many wavelengths lambda phot in the range of 225-290 nm. The C6H5S cofragments are formed in both their ground (X(2)B1) and first excited ((2)B2) electronic states, in a distribution of vibrational levels that spreads and shifts to higher internal energies as lambda(phot) is reduced. Excitation at lambda(phot) > 275 nm populates levels of the first (1)pi pi* state, which decay by tunnelling to the dissociative (1)pi sigma* state potential energy surface (PES). S-H torsional motion is identified as a coupling mode facilitating population transfer at the conical intersection (CI) between the diabatic (1)pi pi* and (1)pi sigma* PESs. At shorter lambda(phot), the (1)pi sigma* state is deduced to be populated either directly or by efficient vibronic coupling from higher (1)pipi* states. Flux evolving on the (1)pi sigma* PES samples a second CI, at longer R(S-H), between the diabatic (1)pi sigma* and ground ((1)pi pi) PESs, where the electronic branching between ground and excited state C6H5S fragments is determined. The C6H5S(X(2)B1) and C6H5S((2)B2) products are deduced to be formed in levels with, respectively, a' and a' vibrational symmetry-behavior that reflects both Franck-Condon effects (both in the initial photoexcitation step and in the subsequent in-plane forces acting during dissociation) and the effects of the out-of-plane coupling mode(s), nu11 and nu16a, at the (1)pi sigma*/(1)pi pi CI. The vibrational state assignments enabled by the high-energy resolution of the present data allow new and improved estimations of the bond dissociation energies, D0(C6H5S-H) < or = 28,030 +/- 100 cm(-1) and D0(C6H5S-D) < or = 28,610 +/- 100 cm(-1), and of the energy separation between the X(2)B1 and (2)B2 states of the C6H5S radical, T(00) = 2800 +/- 40 cm(-1). Similarities, and differences, between the measured energy disposals accompanying UV photoinduced X-H (X = S, O) bond fission in thiophenol and phenol are discussed.     

An electronic perspective on the reduction of an n=n double bond at a conserved dimolybdenum core

Density functional theory has been used to assess the role of the bimetallic core in supporting reductive cleavage of the N=N double bond in [Cp2Mo2(mu-SMe)3(mu-eta1:eta1-HN=NPh)]+. The HOMO of the complex, the Mo-Mo delta orbital, plays a key role as a source of high-energy electrons, available for transfer into the vacant orbitals of the N=N unit. As a result, the metal centres cycle between the Mo(III) and Mo(IV) oxidation states. The symmetry of the Mo-Mo delta "buffer" orbital has a profound influence on the reaction pathway, because significant overlap with the redox-active orbital on the N=N unit (pi* or sigma*) is required for efficient electron transfer. The orthogonality of the Mo-Mo delta and N-N sigma* orbitals in the eta1:eta1 coordination mode ensures that electron transfer into the N-N sigma bond is effectively blocked, and a rate-limiting eta1:eta1-->eta1 rearrangement is a necessary precursor to cleavage of the bond.     

Control of two-electron four-center (2e-/4c) C-C bond formation observed for tetracyanoethenide dimerization, [TCNE]2(2-)

Cu(PPh3)3(TCNE) (TCNE = tetracyanoethylene) and 14 other examples form [TCNE]22- dimers possessing a long 2.89 +/- 0.05 A two-electron four-center (2e-/4c) C-C bond in the solid state. This bond arises from the overlap of the b2g pi* singly occupied molecular orbital (SOMO) on each [TCNE]*- fragment, forming a filled bonding orbital of b2u symmetry, and the stabilizing effect of the cation...anion interactions in the crystal that exceed the anionic repulsion. In contrast, Mn(C5H5)(CO)2(TCNE) exhibits a related, but different, [TCNE]*-...TCNE]*- motif in the solid state that lacks the 2e-/4c C-C bonding. To better understand the unusual nature of 2e-/4c C-C bonding, the genesis of the differences between their respective pi-[TCNE]*-...TCNE]*- interactions was sought. The lack of 2e-/4c C-C bond formation is attributed to the weaker radical character of the [TCNE]*- ligand, which has a total spin population of only 0.5 electron, half of that required for two S = 1/2 [TCNE]*- moieties to form a [TCNE]22- dimer. Hence, the antiferromagnetic MnII-[TCNE]*- intramolecular interaction (between the formally S = 1/2 Mn-bound [TCNE]*- and the paramagnetic Mn(II)) dominates over the intermolecular pi-[TCNE]*--[TCNE]*- spin coupling (between two S = 1/2 [TCNE]*- needed to form [TCNE]22-). Therefore, by selecting specific metal ions that can interact with sigma-[TCNE]*-, dimerization forming [TCNE]22- can be favored or disfavored.     

Stereoelectronic effect on one-electron reductive release of 5-fluorouracil from 5-fluoro-1-(2-oxocycloalkyl)uracils as a new class of radiation-activated antitumor prodrugs

A series of 5-fluoro-1-(2'-oxocycloalkyl)uracils (3-11) that are potentially novel radiation-activated prodrugs for the radiotherapy of hypoxic tumor cells have been synthesized to evaluate a relationship between the molecular structure and the reactivity of one-electron reductive release of antitumor 5-fluorouracil (1) in anoxic aqueous solution. All the compounds 3-11 bearing the 2'-oxo group were one-electron reduced by hydrated electrons (eaq-) and thereby underwent C(1')-N(1) bond dissociation to release 5-fluorouracil 1 in 47-96% yields upon radiolysis of anoxic aqueous solution, while control compounds (12, 13) without the 2'-oxo substituent had no reactivity toward such a reductive C(1')-N(1) bond dissociation. The decomposition of 2-oxo compounds in the radiolytic one-electron reduction was more enhanced, as the one-electron reduction potential measured by cyclic voltammetry in N,N-dimethylformamide became more positive. The efficiency of 5-fluorouracil release was strongly dependent on the structural flexibility of 2-oxo compounds. X-ray crystallographic studies of representative compounds revealed that the C(1')-N(1) bond possesses normal geometry and bond length in the ground state. MO calculations by the AM1 method demonstrated that the LUMO is primarily localized at the pi* orbital of C(5)-C(6) double bond of the 5-fluorouracil moiety, and that the LUMO + 1 is delocalized between the pi* orbital of 2'-oxo substituent and the sigma* orbital of adjacent C(1')-N(1) bond. The one-electron reductive release of 5-fluorouracil 1 in anoxic aqueous solution was presumed to occur from the LUMO + 1 of radical anion intermediates possessing a partial mixing of the antibonding C(2')=O pi* and C(1')-N(1) sigma* MO's, that may be facilitated by a dynamic conformational change to achieve higher degree of (pi* + sigma*) MO mixing.     

Photophysics of aromatic molecules with low-lying pi sigma* states: excitation-energy dependence of fluorescence in jet-cooled aromatic nitriles

Excitation-energy dependence of fluorescence intensity and fluorescence lifetime has been measured for 4-dimethylaminobenzonitrile (DMABN), 4-aminobenzonitrile (ABN), 4-diisopropylaminobenzonitrile (DIABN), and 1-naphthonitrile (NN) in a supersonic free jet. In all cases, the fluorescence yield decreases rather dramatically, whereas the fluorescence lifetime decreases only moderately for S1 (pi pi*, L(b)) excess vibrational energy exceeding about 1000 cm(-1). This is confirmed by comparison of the normalized fluorescence excitation spectrum with the absorption spectrum of the compound in the vapor phase. The result indicates that the strong decrease in the relative fluorescence yield at higher energies is due mostly to a decrease in the radiative decay rate of the emitting state. Comparison of the experimental results with the TDDFT potential energy curves for excited states strongly suggests that the decrease in the radiative decay rate of the aminobenzonitriles at higher energies is due to the crossing of the pi pi* singlet state by the lower-lying pi sigma*(C[triple bond]N) singlet state of very small radiative decay rate. The threshold energy for the fluorescence "break-off" is in good agreement with the computed energy barrier for the pi pi*/pi sigma* crossing. For NN, on the other hand, the observed decrease is in fluorescence yield at higher excitation energies can best be attributed to the crossing of the pi pi* singlet state by the pi sigma* triplet state.     

Theoretical study of the CH2 + O photodissociation of formaldehyde adsorbed on the Ag(111) surface

Configuration interaction calculations of the ground and excited states of the H2CO molecule adsorbed on the Ag(111) surface have been carried out to study the photoinduced dissociation process leading to polymerization of formaldehyde. The metal-adsorbate system has been described by the embedded cluster and multireference configuration interaction methods. The pi electron-attachment H2CO- and n-pi* internally excited H2CO* states have been considered as possible intermediates. The calculations have shown that H2CO* is only very weakly bound on Ag(111), and thus that the dissociation of adsorbed formaldehyde due to internal excitation is unlikely. By contrast, the H2CO- anion is strongly bound to Ag(111) and gains additional vibrational energy along the C-O stretch coordinate via Franck-Condon excitation from the neutral molecule. Computed energy variations of adsorbed H2CO and H2CO- at different key geometries along the pathway for C-O bond cleavage make evident, however, that complete dissociation is very difficult to attain on the potential energy surface of either of these states. Instead, reneutralization of the vibrationally excited anion by electron transfer back to the substrate is the most promising means of breaking the C-O bond, with subsequent formation of the coadsorbed O and CH2 fragments. Furthermore, it has been demonstrated that the most stable state for both dissociation fragments on Ag(111) is a closed-shell singlet, with binding energies relative to the gas-phase products of approximately 3.2 and approximately 1.3 eV for O and CH2, respectively. Further details of the reaction mechanism for the photoinduced C-O bond cleavage of H2CO on the Ag(111) surface are also given.     

Electronic spectra and photodissociation of vinyl chloride: a symmetry-adapted cluster configuration interaction study

The vertical absorption spectrum and photodissociation mechanism of vinyl chloride (VC) were studied by using symmetry-adapted cluster configuration interaction theory. The important vertical pi --> pi* excitation was intensively examined with various basis sets up to aug-cc-pVTZ augmented with appropriate Rydberg functions. The excitation energy for pi --> pi* transition obtained in the present study, 6.96 eV, agrees well with the experimental value, 6.7-6.9 eV. Calculated excitation energies along with the oscillator strengths clarify that the main excitation in VC is the pi --> pi* excitation. Contrary to the earlier theoretical reports, the results obtained here support that the C-Cl bond dissociation takes place through the n(Cl-)sigma(C-Cl)* state.     

Electron attachment step in electron capture dissociation (ECD) and electron transfer dissociation (ETD)

We have made use of classical dynamics trajectory simultions and ab initio electronic structure calculations to estimate the cross sections with which electrons are attached (in electron capture dissociation (ECD)) or transferred (in electron transfer dissociation (ETD)) to a model system that contained both an S-S bond that is cleaved and a -NH(3)(+) positively charged site. We used a Landau-Zener-Stueckelberg curve-crossing approximation to estimate the ETD rates for electron transfer from a CH(3)(-) anion to the -NH(3)(+) Rydberg orbital or the S-S sigma* orbital. We draw conclusions about ECD from our ETD results and from known experimental electron-attachment cross sections for cations and sigma-bonds. We predict the cross section for ETD at the positive site of our model compound to be an order of magnitude larger than that for transfer to the Coulomb-stabilized S-S bond site. We also predict that, in ECD, the cross section for electron capture at the positive site will be up to 3 orders of magnitude larger than that for capture at the S-S bond site. These results seem to suggest that attachment to such positive sites should dominate in producing S-S bond cleavage in our compound. However, we also note that cleavage induced by capture at the positive site will be diminished by an amount that is related to the distance from the positive site to the S-S bond. This dimunition can render cleavage through Coulomb-assisted S-S sigma* attachment competitive for our model compound. Implications for ECD and ETD of peptides and proteins in which SS or N-C(alpha) bonds are cleaved are also discussed, and we explain that such events are most likely susceptible to Coulomb-assisted attachment, because the S-S sigma* and C=O pi* orbitals are the lowest-lying antibonding orbitals in most peptides and proteins.     

Empty level structure and dissociative electron attachment cross section in (bromoalkyl)benzenes

The gas-phase electron transmission (ET) and dissociative electron attachment (DEA) spectra are reported for the series of (bromoalkyl)benzenes C6H5(CH2)nBr (n = 0-3), where the bromine atom is directly bonded to a benzene ring or separated from it by 1-3 CH2 groups, and the dihalo derivative 1-Br-4-Cl-benzene. The relative DEA cross sections (essentially due to the Br- fragment) are reported, and the absolute cross sections are also evaluated. HF/6-31G and B3LYP/6-31G* calculations are employed to evaluate the virtual orbital energies (VOEs) for the optimized geometries of the neutral state molecules. The pi* VOEs, scaled with empirical equations, satisfactorily reproduce the corresponding experimental vertical electron attachment energies (VAEs). According to the calculated localization properties, the LUMO (as well as the singly occupied MO of the lowest lying anion state) of C6H5(CH2)3Br is largely localized on both the benzene ring and the C-Br bond, despite only a small pi*/sigma*C-Br interaction and in contrast to the chlorine analogue where the LUMO is predicted to possess essentially ring pi character. This would imply a less important role of intramolecular electron transfer in the bromo derivative for production of the halogen negative fragment through dissociation of the first resonant state. The VAEs calculated as the anion/neutral energy difference with the 6-31+G* basis set which includes diffuse functions are relatively close to the experimental values but do not parallel their sequence. In addition the SOMO of some compounds is not described as a valence MO with large pi* character but as a diffuse sigma* MO.     

Experimental and theoretical study of the photodissociation reaction of thiophenol at 243 nm: intramolecular orbital alignment of the phenylthiyl radical

The photoinduced hydrogen (or deuterium) detachment reaction of thiophenol (C(6)H(5)SH) or thiophenol-d(1) (C(6)H(5)SD) pumped at 243 nm has been investigated using the H (D) ion velocity map imaging technique. Photodissociation products, corresponding to the two distinct and anisotropic rings observed in the H (or D) ion images, are identified as the two lowest electronic states of phenylthiyl radical (C(6)H(5)S). Ab initio calculations show that the singly occupied molecular orbital of the phenylthiyl radical is localized on the sulfur atom and it is oriented either perpendicular or parallel to the molecular plane for the ground (B(1)) and the first excited state (B(2)) species, respectively. The experimental energy separation between these two states is 2600+/-200 cm(-1) in excellent agreement with the authors' theoretical prediction of 2674 cm(-1) at the CASPT2 level. The experimental anisotropy parameter (beta) of -1.0+/-0.05 at the large translational energy of D from the C(6)H(5)SD dissociation indicates that the transition dipole moment associated with this optical transition at 243 nm is perpendicular to the dissociating S-D bond, which in turn suggests an ultrafast D+C(6)H(5)S(B(1)) dissociation channel on a repulsive potential energy surface. The reduced anisotropy parameter of -0.76+/-0.04 observed at the smaller translational energy of D suggests that the D+C(6)H(5)S(B(2)) channel may proceed on adiabatic reaction paths resulting from the coupling of the initially excited state to other low-lying electronic states encountered along the reaction coordinate. Detailed high level ab initio calculations adopting multireference wave functions reveal that the C(6)H(5)S(B(1)) channel may be directly accessed via a (1)(n(pi),sigma(*)) photoexcitation at 243 nm while the key feature of the photodissociation dynamics of the C(6)H(5)S(B(2)) channel is the involvement of the (3)(n(pi),pi(*))-->(3)(n(sigma),sigma(*)) profile as well as the spin-orbit induced avoided crossing between the ground and the (3)(n(pi),sigma(*)) state. The S-D bond dissociation energy of thiophenol-d(1) is accurately estimated to be D(0)=79.6+/-0.3 kcalmol. The S-H bond dissociation energy is also estimated to give D(0)=76.8+/-0.3 kcalmol, which is smaller than previously reported ones by at least 2 kcalmol. The C-H bond of the benzene moiety is found to give rise to the H fragment. Ring opening reactions induced by the pi-pi(*)n(pi)-pi(*) transitions followed by internal conversion may be responsible for the isotropic broad translational energy distribution of fragments.     

Theoretical investigations into the intermediacy of chlorinated vinylcobalamins in the reductive dehalogenation of chlorinated ethylenes

The reductive dehalogenation of perchloroethylene and trichloroethylene by vitamin B(12) produces approximately 95% (Z)-dichloroethylene (DCE) and small amounts of (E)-DCE and 1,1-DCE, which are further reduced to ethylene and ethane. Chloroacetylene and acetylene have been detected as intermediates, but not dichloroacetylene. Organocobalamins (RCbls) have been proposed to be intermediates in this process. Density functional theory based approaches were employed to investigate the properties of chlorinated vinylcobalamins and chlorinated vinyl radicals. They reveal that all vinyl radicals studied have reduction potentials more positive (E degrees >or= -0.49) than that of the Co(II)/Co(I) couple of B(12) (E degrees = -0.61 V), indicating that any (chlorinated) vinyl radicals formed in the reductive dehalogenation process should be reduced to the corresponding anions by cob(I)alamin in competition with their combination with Co(II) to yield the corresponding vinylcobalamins. The computed Co-C homolytic bond dissociation enthalpies (BDEs) of the latter complexes range from 33.4 to 45.8 kcal/mol. The substituent effects on the BDEs are affected by the stabilities of the vinyl radicals as well as steric interactions between (Z)-chloro substituents and the corrin ring. The calculated E degrees values of the cobalamin models were within approximately 200 mV of one another since electron attachment is to a corrin ring pi-orbital, whose energy is relatively unaffected by chloride substitution of the vinyl ligand, and all were >500 mV more negative than that of the Co(II)/Co(I) couple of B(12). Reduction of the base-off forms of vinyl- and chlorovinylcobalamin models also involves the corrin pi* orbital, but reduction of the base-off dichlorovinyl- and trichlorovinylcobalamin models occurs with electron attachment to the sigma(Co)(-)(C*) orbital, yielding calculated E degrees values more positive than that of the calculated Co(II)/Co(I) couple of B(12). Thus, cob(I)alamin is expected to reduce these base-off vinyl-Cbls. Heterolytic cleavage of the Co-C bonds is much more favorable than homolysis (>21 kcal/mol) and is significantly more exergonic when coupled to chloride elimination.     

Time-dependent quantum wave-packet description of the 1pi sigma* photochemistry of phenol

The photoinduced hydrogen elimination reaction in phenol via the conical intersections of the dissociative 1pi sigma* state with the 1pi pi* state and the electronic ground state has been investigated by time-dependent quantum wave-packet calculations. A model including three intersecting electronic potential-energy surfaces (S0, 1pi sigma*, and 1pi pi*) and two nuclear degrees of freedom (OH stretching and OH torsion) has been constructed on the basis of accurate ab initio multireference electronic-structure data. The electronic population transfer processes at the conical intersections, the branching ratio between the two dissociation channels, and their dependence on the initial vibrational levels have been investigated by photoexciting phenol from different vibrational levels of its ground electronic state. The nonadiabatic transitions between the excited states and the ground state occur on a time scale of a few tens of femtoseconds if the 1pi pi*-1pi sigma* conical intersection is directly accessible, which requires the excitation of at least one quantum of the OH stretching mode in the 1pi pi* state. It is shown that the node structure, which is imposed on the nuclear wave packet by the initial preparation as well as by the transition through the first conical intersection (1pi pi*-1pi sigma*), has a profound effect on the nonadiabatic dynamics at the second conical intersection (1pi sigma*-S0). These findings suggest that laser control of the photodissociation of phenol via IR mode-specific excitation of vibrational levels in the electronic ground state should be possible.     

Ab initio calculations of triplet excited states and potential-energy surfaces of vinyl chloride: insights into spectroscopy and photodissociation dynamics

The equilibrium geometries and harmonic vibrational frequencies of three low-lying triplet excited states of vinyl chloride have been calculated using the state-averaged complete active space self-consistent field (CASSCF) method with the 6-311++G(d,p) basis set and an active space of four electrons distributed in 13 orbitals. Both adiabatic and vertical excitation energies have been obtained using the state-averaged CASSCF and the multireference configuration-interaction methods. The potential-energy surfaces of six low-lying singlet states have also been calculated. While the 3(pi, pi*) state has a nonplanar equilibrium structure, the 3(pi, 3s) and 3(pi, sigma*) states are planar. The calculated vertical excitation energy of the 3(pi, pi*) state is in agreement with the experiment. The singlet excited states are found to be multiconfigurational, in particular, the first excited state is of (pi, 3s) character at the planar equilibrium structure, of (pi, sigma*) as the C-Cl bond elongates, and of (pi, pi*) for highly twisted geometries. Avoided crossings are observed between the potential-energy surfaces of the first three singlet excited states. The absorption spectra of vinyl chloride at 5.5-6.5 eV can be unambiguously assigned to the transitions from the ground state to the first singlet excited state. The dissociation of Cl atoms following 193-nm excitation is concluded to take place via two pathways: one is through (pi, sigma*) at planar or nearly planar structures leading to fast Cl atoms and the other through (pi, pi*) at twisted geometries from which internal conversion to the ground state and subsequent dissociation produces slow Cl atoms.     

Theoretical study of the vertical excited states of benzene, pyrimidine, and pyrazine by the symmetry adapted cluster--configuration interaction method

The ground state and the excited states of benzene, pyrimidine, and pyrazine have been examined by using the symmetry adapted cluster-configuration interaction (SAC-CI) method. Detailed characterizations and the structures of the absorption peaks in the vacuum ultraviolet (VUV), low energy electron impact (LEEI), and electron energy loss (EEL) spectra were theoretically clarified by calculating the excitation energy and the oscillator strength for each excited state. We show that SAC-CI has the power to well reproduce the electronic excitation spectra (VUV, LEEI, and EEL) simultaneously to an accuracy for both the singlet and the triplet excited states originated from the low-lying pi --> pi*, n --> pi*, pi --> sigma* and n --> sigma* excited states of the titled compounds. The present results are compared with those of the previous theoretical studies by methods, such as EOM-CCSD(T), STEOM-CCSD, CASPT2 and TD-B3LYP, etc.     

SO<Stack><Subscript>2</Subscript><Superscript>−·</Superscript></Stack> electron transfer ion/ion reactions with disulfide linked polypeptide ions

Multiply-charged peptide cations comprised of two polypeptide chains (designated A and B) bound via a disulfide linkage have been reacted with SO2-* in an electrodynamic ion trap mass spectrometer. These reactions proceed through both proton transfer (without dissociation) and electron transfer (with and without dissociation). Electron transfer reactions are shown to give rise to cleavage along the peptide backbone, loss of neutral molecules, and cleavage of the cystine bond. Disulfide bond cleavage is the preferred dissociation channel and both Chain A (or B)-S* and Chain A (or B)-SH fragment ions are observed, similar to those observed with electron capture dissociation (ECD) of disulfide-bound peptides. Electron transfer without dissociation produces [M + 2H]+* ions, which appear to be less kinetically stable than the proton transfer [M + H]+ product. When subjected to collision-induced dissociation (CID), the [M + 2H]+* ions fragment to give products that were also observed as dissociation products during the electron transfer reaction. However, not all dissociation channels noted in the electron transfer reaction were observed in the CID of the [M + 2H]+* ions. The charge state of the peptide has a significant effect on both the extent of electron transfer dissociation observed and the variety of dissociation products, with higher charge states giving more of each.     

Which DFT functional performs well in the calculation of methylcobalamin? Comparison of the B3LYP and BP86 functionals and evaluation of the impact of empirical dispersion correction

Controversy remains regarding the suitable density functionals for the calculation of vitamin B(12) systems that contain cobalt. To identify the optimum functionals, geometry optimization calculations were performed on a full-size model of methylcobalamin (MeCbl) using the B3LYP, B3LYP-D, BP86, and BP86-D methods in conjunction with the 6-31G* basis set. Single-point energy evaluations were also performed with the 6-311+G(2d,p) basis set. Consistent with previous studies, the BP86-optimized geometry showed fairly good agreement with the experimental geometry. Various factors that may influence the homolytic bond dissociation energy (BDE) of the Co-C bond of MeCbl were systematically evaluated with these methods. Our analysis demonstrated that dispersion was the largest correction term that influenced the magnitude of BDE. Previous studies have shown that B3LYP significantly underestimates BDE, whereas BP86 gives BDE values that are fairly close to the experimental values (36-37 kcal/mol). The same trend in the relative magnitudes of the BDEs was observed in the present calculations. However, BP86 underestimated the BDE for a full model of MeCbl. When the amount of Hartree-Fock exchange in the B3LYP functional was reduced to 15% and the dispersion correction was made (i.e., B3LYP*-D), the calculated BDE was in good accord with experimental values. B3P86-D also performed well. A detailed analysis was undertaken to determine which atoms in cobalamin have large dispersion interactions with a methyl fragment of MeCbl.     

High resolution photofragment translational spectroscopy of the near UV photolysis of indole: dissociation via the 1pi sigma* state

The fragmentation dynamics of indole molecules following excitation at 193.3 nm, and at a number of different wavelengths in the range 240 < or = lambda(phot) < or = 286 nm, have been investigated by H Rydberg atom photofragment translational spectroscopy. The longer wavelength measurements have been complemented by measurements of excitation spectra for forming parent and fragment ions by two (or more) photon ionisation processes. Analysis identifies at least three distinct contributions to the observed H atom yield, two of which are attributable to dissociation of indole following radiationless transfer from the 1pi pi* excited states (traditionally labelled 1L(b) and 1L(a)) prepared by UV single photon absorption. The structured channel evident in total kinetic energy release (TKER) spectra recorded at lambda(phot) < or = 263 nm is rationalised in terms of N-H bond fission following initial pi* <-- pi excitation and subsequent coupling to the 1pi sigma* potential energy surface via a conical intersection between the respective surfaces--thereby validating recent theoretical predictions regarding the importance of this process (Sobolewski et al., Phys. Chem. Chem. Phys., 2002, 4, 1093). Analysis provides an upper limit for the N-H bond strength in indole: D0(H-indolyl) < or = 31,900 cm(-1). Unimolecular decay of highly vibrationally excited ground state molecules formed by internal conversion from the initially prepared 1pi pi* states is a source of (slow) H atoms but their contribution to the TKER spectra measured in the present work is dwarfed by that from H atoms generated by one or more (unintended but unavoidable) multiphoton processes.