Use of the 2D 1H-13C HSQC NMR Methyl Region to Evaluate the Higher Order Structural Integrity of Biopharmaceuticals

The higher-order structure (HOS) of protein therapeutics is directly related to the function and represents a critical quality attribute. Currently, the HOS of protein therapeutics is characterized by methods with low to medium structural resolution, such as Fourier transform infrared (FTIR), circular dichroism (CD), intrinsic fluorescence spectroscopy (FLD), and differential scanning calorimetry (DSC). High-resolution nuclear magnetic resonance (NMR) methods have now been introduced, representing powerful approaches for HOS characterization (HOS by NMR). NMR is a multi-attribute method with unique abilities to give information on all structural levels of proteins in solution. In this study, we have compared 2D ¹H-¹³C HSQC NMR with two established biophysical methods, i.e., near-ultraviolet circular dichroism (NUV-CD) and intrinsic fluorescence spectroscopy, for the HOS assessments for the folded and unfolded states of two monoclonal antibodies belonging to the subclasses IgG1 and IgG2. The study shows that the methyl region of the ¹H-¹³C HSQC NMR spectrum is sensitive to both the secondary and tertiary structure of proteins and therefore represents a powerful tool in assessing the overall higher-order structural integrity of biopharmaceutical molecules.     

Evaluation of double-tuned single-sided planar microcoils for the analysis of small 13C enriched biological samples using 1H-13C 2D heteronuclear correlation NMR spectroscopy

Microcoils provide a cost-effective approach to improve detection limits for mass-limited samples. Single-sided planar microcoils are advantageous in comparison to volume coils, in that the sample can simply be placed on top. However, the considerable drawback is that the RF field that is produced by the coil decreases with distance from the coil surface, which potentially limits more complex multi-pulse NMR pulse sequences. Unfortunately, ¹H NMR alone is not very informative for intact biological samples due to line broadening caused by magnetic susceptibility distortions, and ¹H-¹³C 2D NMR correlations are required to provide the additional spectral dispersion for metabolic assignments in vivo or in situ. To our knowledge, double-tuned single-sided microcoils have not been applied for the 2D ¹H-¹³C analysis of intact ¹³C enriched biological samples. Questions include the following: Can ¹H-¹³C 2D NMR be performed on single-sided planar microcoils? If so, do they still hold sensitivity advantages over conventional 5 mm NMR technology for mass limited samples? Here, 2D ¹H-¹³C HSQC, HMQC, and HETCOR variants were compared and then applied to ¹³C enriched broccoli seeds and Daphnia magna (water fleas). Compared to 5 mm NMR probes, the microcoils showed a sixfold improvement in mass sensitivity (albeit only for a small localized region) and allowed for the identification of metabolites in a single intact D. magna for the first time. Single-sided planar microcoils show practical benefit for ¹H-¹³C NMR of intact biological samples, if localized information within ~0.7 mm of the 1 mm I.D. planar microcoil surface is of specific interest.     

New catharanthusopimaranoside A and B from hairy root cultures of Catharanthus roseus

Two new compounds catharanthusopimaranoside A (1) and catharanthusopimaranoside B (2) along with three known compounds have been isolated from the hairy root cultures of Catharanthus roseus. Their structures have been elucidated with the help of 500 MHz NMR using 1D and 2D spectral methods viz: NMR, ¹H-¹H COSY, ¹H-¹³C HETCOR, etc., and DEPT aided by EIMS, FABMS, and IR spectroscopy. __________ Published in Khimiya Prirodnykh Soedinenii, No. 4, pp. 369–372, July–August, 2008.     

Synthesis and NMR spectral assignments of novel 1,4-benzothiazepine-5-one derivatives

The one-pot reaction between 2-aminobenzo[d]isothiazol-3-one and alkyl propiolates in presence of triphenylphosphine leads to the corresponding alkyl 4-amino-5-oxobenzo[f][1,4]thiazepine-3-carboxylates. A plausible mechanism of the reaction is proposed and unambiguous evidence for the structures is obtained from a detailed magnetic resonance spectral analysis. 1D and 2D NMR spectra such as COSY, ¹H-¹³C and ¹H-¹⁵N HSQC and HMBC heteronuclear correlations and an INADEQUATE experiment are reported and discussed.     

Encapsulation of Indomethacin in PVP: Solid-State NMR Studies

Summary: ¹³C solid-state NMR and ¹H relaxation time measurements have been used to determine the structure of the crystalline and amorphous forms of the pharmaceutical drug indomethacin. Cross-polarization dynamics parameters were calculated for individual NMR resonances providing an insight into the mobility of functional groups in two forms of indomethacin. The changes of mobility in indomethacin/polyvinylpyrrolidone (PVP) formulation have been investigated via¹H-¹³C solid-state NMR methods. Differences between the amorphous material and its crystalline counterpart have been observed. The γ-amorphous indomethacin rapidly crystallizes with time. It has been shown that encapsulation in the PVP stabilizes the amorphous form of the drug by preventing crystallization due to reduced mobility of the guest in the formulation.     

13C isotope effects on 1H chemical shifts: NMR spectral analysis of 13C‐labelled D‐glucose and some 13C‐labelled amino acids

The one‐ and two‐bond ¹³C isotope shifts, typically ?1.5 to ?2.5 ppb and ?0.7 ppb respectively, in non‐cyclic aliphatic systems and up to ?4.4 ppb and ?1.0 ppb in glucose cause effects that need to be taken into account in the adaptive NMR spectral library‐based quantification of the isotopomer mixtures. In this work, NMR spectral analyses of some ¹³C‐labelled amino acids, D ‐glucose and other small compounds were performed in order to obtain rules for prediction of the ¹³C isotope effects on ¹H chemical shifts. It is proposed that using the additivity rules, the isotope effects can be predicted with a sufficient accuracy for amino acid isotopomer applications. For glucose the effects were found strongly non‐additive. The complete spectral analysis of fully ¹³C‐labelled D ‐glucose made it also possible to assign the exocyclic proton signals of the glucose. Copyright © 2009 John Wiley & Sons, Ltd.     

New Sesquiterpene Glycosides from Culture Hairy Roots of Catharanthus roseus

Two new compounds cadin-2-en-1β-ol-1β-D-glucuronopyranoside （1）, guaia-l,7-dien-3β,13-diol-13α-D- glucofuranoside （2） along with three known compounds have been isolated from the culture hairy roots of Catharanthus roseus. Their structures have been elucidated with the help of 500 MHz NMR using 1D and 2D spectral methods： viz： ^1H and ^13C NMR, ^1H-^1H COSY, ^1H-^13C HETCOR and DEPT aided by ELMS, FAB-MS, HR-FABMS and IR spectroscopy.     

Characterization of stress degradation products of benazepril by using sophisticated hyphenated techniques

Benazepril, an anti-hypertensive drug, was subjected to forced degradation studies. The drug was unstable under hydrolytic conditions, yielding benazeprilat, which is a known major degradation product (DP) and an active metabolite. It also underwent photochemical degradation in acid and neutral pH conditions, resulting in multiple minor DPs. The products were separated on a reversed phase (C18) column in a gradient mode, and subjected to LC–MS and LC–NMR studies. Initially, comprehensive mass fragmentation pathway of the drug was established through support of high resolution mass spectrometric (HR-MS) and multi stage tandem mass spectrometric (MSⁿ) data. The DPs were also subjected to LC–MS/TOF studies to obtain their accurate masses. Along with, on-line H/D exchange data were obtained to ascertain the number of exchangeable hydrogens in each molecule. LC–¹H NMR and LC–2DNMR data were additionally acquired in a fraction loop mode. The whole information was successfully employed for the characterization of all the DPs. A complete degradation pathway of the drug was also established.     

Disentangling Complex Mixtures of Compounds with Near‐Identical 1H and 13C NMR Spectra using Pure Shift NMR Spectroscopy

The thorough analysis of highly complex NMR spectra using pure shift NMR experiments is described. The enhanced spectral resolution obtained from modern 2D HOBS experiments incorporating spectral aliasing in the ¹³C indirect dimension enables the distinction of similar compounds exhibiting near‐identical ¹H and ¹³C NMR spectra. It is shown that a complete set of extremely small Δδ(¹H) and Δδ(¹³C) values, even below the natural line width (1 and 5 ppb, respectively), can be simultaneously determined and assigned.     

Folipidine,a New Type Quinoline Alkaloid from Plants of the <Emphasis Type="Italic">Haplophyllum</Emphasis> Genus

The new quinoline alkaloid folipidine, the structure of which was established by chemical transformations and spectral data (UV, IR, mass, NMR) using APT, 2D ¹H-¹H COSY, NOESY, and ¹H-¹³C HSQC, HMBC, was isolated from two plants of the Haplophyllum genus. Folipidine is the first representative of a new type of quinoline alkaloids that contain a heteroaromatic skeleton of [3,4-b] conjugated pyrrole and quinoline fragments. The total alkaloids of these plants exhibit antitumor activity. Folipidine does not possess such activity.__________Translated from Khimiya Prirodnykh Soedinenii, No. 1, pp. 49–52, January–February, 2005.     

Simulation of 2D H homo- and H-C heteronuclear NMR spectra of organic molecules by DFT calculations of spin-spin coupling constants and H and C-chemical shifts

Simulation of 2D ¹H homo- and ¹H-¹³C heteronuclear NMR spectra of organic molecules are here suggested as a tool in the structure elucidation of organic compounds. DFT calculations of ¹H and ¹³C chemical shifts are performed on a sample compound, the ethyl ester of the exo-2-norbornanecarbamic acid, with the mPW1PW91 method using the 6-31G(d) basis set, following a full optimization of the geometry. Homo and heteronuclear spin-spin coupling constants are also calculated, providing full prediction of the common 2D ¹H-¹H COSY, 2D ¹H-¹³C HSQC, and 2D ¹H-¹³C HMBC.     

Rapid and novel discrimination and quantification of oleanolic and ursolic acids in complex plant extracts using two-dimensional nuclear magnetic resonance spectroscopy—Comparison with HPLC methods

A novel strategy for NMR analysis of mixtures of oleanolic and ursolic acids that occur in natural products is described. These important phytochemicals have similar structure and their discrimination and quantification is rather difficult. We report herein the combined use of proton-carbon heteronuclear single-quantum coherence (¹H-¹³C HSQC) and proton-carbon heteronuclear multiple-bond correlation (¹H-¹³C HMBC) NMR spectroscopy, in the identification and quantitation of oleanolic acid (OA) and ursolic acid (UA)in plant extracts of the Lamiaceae and Oleaceae family. The combination of ¹H-¹³C HSQC and ¹H-¹³C HMBC techniques allows the connection of the proton and carbon-13 spins across the molecular backbone resulting in the identification and, thus, discrimination of oleanolic and ursolic acid without resorting to physicochemical separation of the components. The quantitative results provided by 2D ¹H-¹³C HSQC NMR data were obtained within a short period of time (∼14 min) and are in excellent agreement with those obtained by HPLC, which support the efficiency of the suggested methodology.     

PI by NMR: Probing CH–π Interactions in Protein–Ligand Complexes by NMR Spectroscopy

While CH–π interactions with target proteins are crucial determinants for the affinity of arguably every drug molecule, no method exists to directly measure the strength of individual CH–π interactions in drug–protein complexes. Herein, we present a fast and reliable methodology called PI (π interactions) by NMR, which can differentiate the strength of protein–ligand CH–π interactions in solution. By combining selective amino-acid side-chain labeling with ¹H-¹³C NMR, we are able to identify specific protein protons of side-chains engaged in CH–π interactions with aromatic ring systems of a ligand, based solely on ¹H chemical-shift values of the interacting protein aromatic ring protons. The information encoded in the chemical shifts induced by such interactions serves as a proxy for the strength of each individual CH–π interaction. PI by NMR changes the paradigm by which chemists can optimize the potency of drug candidates: direct determination of individual π interactions rather than averaged measures of all interactions.     

Peptide conformation, 24 homo- and heteronuclear 2D NMR spectroscopy of cyclic pentapeptides containing the active sequenceof somatostatin

2D NMR methods such as SECSY and 2D-¹H-¹³C-shift correlations enable assignments of the NMR signals in three cyclic peptides of the constitution cyclo | Phe-Trp-Lys-Thr-Pro |     

脯氨酸类N-酰胺衍生物的核磁共振研究

脯氨酸类衍生物结构独特,鲜有报道利用核磁共振（nuclear magnetic resonance,NMR）技术对氨基酸的手性进行鉴别.利用多种NMR技术:1H NMR、1H-1H同核位移相关谱（1H-1H COSY）、1H-1H质子全相关谱（1H-1H TOCSY）、1H-1H核Overhauser效应谱（1H-1H NOESY）、13C NMR、无畸变的极化转移增强法（DEPT135°）、1H-13C检出1H的异核单量子相干（1H-13C HSQC）和1H-13C检出1H的异核多键相关（1H-13C HMBC）,对脯氨酸类N-酰胺衍生物两种构象异构体的1H和13C NMR进行了全归属,确定了室温下在二甲基亚砜（DMSO）中L型和D型的顺反异构体以相同的比例同时存在.     

Synthesis and characterization of a new pillar[5]arene-based [1]rotaxane

In this study, we reported the synthesis of three kinds of mono-functional pillar[5]arene derivatives PRI, PRII and R and their structures were studied by 1D and 2D NMR spectra and mass spectra. The 2D NMR spectra including ¹H-¹³C HSQC, ¹H-¹H COSY and NOESY spectra indicated that PRI and PRII are both stable self-included pseudo[1]rotaxanes in CDCl₃. These original structures are promising compounds for the design of pillar[5]-based [1]rotaxane. And the results showed that R could exist stable in CDCl₃ and DMSO because of the coordination of N-H?O hydrogen bonding interaction and C-H?π interaction.     

Phosphate Derivatives of Natural Lactones. I. Synthesis of Novel Isoalantolactone Dialkylphosphonates

Novel isoalantolactone dialkylphosphonates were synthesized in 70-87% yields by reacting this eudesmanolide with dialkylphosphites. Their structures were proved by spectral analysis using IR, PMR, ¹³C and ³¹P NMR, and two-dimensional ¹H-¹H (COSY) spectroscopy. The reaction of isoalantolactone with dialkylphosphites is highly stereoselective.     

2D NMR characterization of poly(ethylene-co-5-vinyl-2-norbornene)

Unsaturated poly(ethylene-co-5-vinyl-2-norbornene) was synthetized using the [Ph₂C(Flu)(Cp)]ZrCl₂ metallocene/methylaluminoxane (MAO) catalyst system. ¹H and ¹³C NMR spectra of the copolymer were assigned by means of DEPT, homonuclear 2D ¹H-¹H COSY, and heteronuclear 2D ¹H-¹³C correlation NMR experiments. The used catalyst system produces mainly isolated 5-vinyl-2-norbornene (VNB) sequences. VNB is incorporated selectively via the cyclic double bond. The unreacted double bond of the copolymer exists in the 5-endo: 5-exo positions (3 : 1). Both isomers of VNB are polymerized with the same propability.     

Structural Refinement of Carbimazole by NMR Crystallography

The characterization of the three-dimensional structure of solids is of major importance, especially in the pharmaceutical field. In the present work, NMR crystallography methods are applied with the aim to refine the crystal structure of carbimazole, an active pharmaceutical ingredient used for the treatment of hyperthyroidism and Grave’s disease. Starting from previously reported X-ray diffraction data, two refined structures were obtained by geometry optimization methods. Experimental ¹H and ¹³C isotropic chemical shift measured by the suitable ¹H and ¹³C high-resolution solid state NMR techniques were compared with DFT-GIPAW calculated values, allowing the quality of the obtained structure to be experimentally checked. The refined structure was further validated through the analysis of ¹H-¹H and ¹H-¹³C 2D NMR correlation experiments. The final structure differs from that previously obtained from X-ray diffraction data mostly for the position of hydrogen atoms.     

Diversivittatin,a new phenylpropanoid derivative from the roots of <Emphasis Type="Italic">Ferula diversivittata</Emphasis>

A new phenylpropanoid derivative, diversivittatin, was isolated from the roots of Ferula diversivittata. The structure of this compound was elucidated by extensive spectroscopic methods including 1D (¹H and ¹³C) and 2D NMR experiments (¹H-¹H COSY, HMQC, HMBC, and NOESY) as well as high-resolution EI-MS.