Proton-ionizable crown compounds. 17. Transport studies of alkali metal ions in a H2O-CH2Cl2-H2O liquid membrane system by macrocycles containing two sulfonamide groups derived fromo- andm-phenylene diamine

The transport of alkali metal cations by several macrocycles possessing two sulfonamide groups as a part of an 18-, 20-, or 21-membered macroring has been studied. Some of these compounds were found to be more effective transport agents than the proton-ionizable pyridone- and triazole-containing crown ethers reported previously. The factors affecting transport, such as ring size, source and receiving phase pH, and the nature of the groups attached to the sulfonamide nitrogen atoms were examined. Also, extraction experiments by some of the ligands were performed. The behavior of sulfonamide type crowns in single and competitive transport of the alkali metal cations is explained. The mechanism of transport appears to be complex. Transport of one or two cations per molecule of the disulfonamide carriers occurs. Complexation of these cations appears to occur both within and outside the macrocycle cavity. Our results also suggest that kinetic factors may play a significant role in transport rates and selectivities.Deceased: September 5, 1987.     

Crystal structure of {aquaimidazole-[2-(2-carbamoylhydrazone)-propionato]} copper(II) nitrate

The crystal structure of {aquaimidazole[2-(2-carbamoylhydrazone)-propionato]}copper(II) nitrate [Cu(L)Im(H₂O)]NO₃ (I), where HL is the semicarbazone of pyruvic acid, Im is imidazole, is dtermined. The crystal structure of I contains two independent complexes IA and IB in which copper atoms coordinate once deprotonated tridentate HL, imidazole, and water molecules. Outer spheres of the complexes contain nitrate ions. In the compounds studied the coordination polyhedron of the copper atom is a distorted tetragonal pyramid. Its base is composed of carboxyl and carbamide oxygen atoms, azomethine nitrogen of monodeprotonated HL molecules, and the imidazole nitrogen atom. In the crystal, nitrate ions and imidazole molecules link the complexes via hydrogen bonds into 2D networks parallel to the (010) plane. These networks in turn are in pairs arranged into layers along the [010] direction due to hydrogen bonds between water molecules and oxygen atoms of nitrate ions, and also by water molecules and O3 atoms of the neighboring 2D networks. In the crystal, the π-π stacking interaction is observed between the imidazole rings from different layers and there is also a N-O…Cg (π ring) interaction inside the layers.     

Binuclear and polynuclear transition metal complexes with macrocyclic ligands. 2. New macrocyclic Schiff"s base in the reaction of 4-tert-butyl-2,6-diformylphenol with 1,2-diaminobenzene. Synthesis and structural,spectroscopic, and theoretical study

Condensation of 4-tert-butyl-2,6-diformylphenol with 1,2-diaminobenzene in ethanol is accompanied by partial reduction of the azomethine double bonds to form symmetrical macrocyclic Schiff"s base containing the alternating >C=N and >CH—NH fragments. In solution, this compound exists as the only isomer in which two endocyclic hydrogen atoms are bound to the oxygen atoms of the phenol groups and two other endocyclic H atoms are attached to the nitrogen atoms of the CH₂—NH fragments. All endocyclic protons are involved in hydrogen bonding and undergo rapid exchange with each other at room temperature. In the crystal, the planar macrocyclic molecules are arranged in closely packed stacks. The steric hindrances resulting from overlapping of the bulky tert-butyl groups are eliminated through rotation of the molecules with respect to each other in the adjacent layers. Study of the potential energy surface for the Schiff"s base under consideration by the DFT method demonstrated that the structure corresponding to the global minimum is similar to that found in solution. However, the isolated molecule is nonplanar, its macrocycle adopting a ladder conformation. The local minimum on the potential energy surface whose energy is 2.6 kcal mol^–1 higher than that of the global minimum corresponds to the zwitterionic structure in which all four endocyclic hydrogen atoms are attached to the nitrogen atoms and the macrocycle adopts a tub conformation. Flattening of the ring is considered as a consequence of stacking interactions between the molecules in the crystal.     

Biladienones from the photooxidation of a meso-gem-disubstituted phlorin: crystal and molecular structures of the 3N + O coordinated nickel(II) and copper(II) complexes

The photooxidation of a meso-gem-disubstituted phlorin gave two isomeric biladienones in an equilibrium involving a Z-E double bond photoisomerism. The structures of these bile pigments were elucidated using NMR techniques and show terminal benzoyl and pyrrolone moieties. Complexation with divalent cations (nickel(II), copper (II)) gave stable compounds whose crystal and molecular structure could be determined by X-ray diffraction. The metal is coordinated with three pyrrole nitrogen atoms and one oxygen atom of a terminal benzoyl group. In the crystal, the molecules are arranged in pairs through hydrogen bonds between the free terminal pyrrolones.     

含2-苯氧基丙酸根的镍、锌配位聚合物的合成与晶体结构

用溶液法和水热法分别合成了2个含2-苯氧基丙酸配体(HL)的聚合物{[NiL2(H2O)2(bipy)].2H2O}n(1)、{[ZnL2(bipy)].2H2O}n(2)(bipy=4,4′-联吡啶),用元素分析、红外光谱、热重和单晶X-射线衍射对产物进行了表征。在化合物1中,镍原子与2个羧基氧原子、2个配位水氧原子及2个4,4′-联吡啶的2个氮原子配位,配位数为6,镍原子的配位构型为畸变的八面体;而在化合物2中,锌原子与2个羧基氧原子及2个4,4′-联吡啶中的2个氮原子配位,锌原子的配位构型为畸变的四面体。在这2个化合物里,4,4′-联吡啶通过氮原子连接金属原子形成一维链状。链间氢键与π-π堆积作用又将一维链链接成二维层状结构。     

EXAFS and FTIR structural characterization for the crystal of monomeric tetraphenylporphyrinato gadolinium:[Gd(TPP)acac 8H_2O.3TCB]

The coordination number of the gadolinium atom and bond distances in the crystal of inonomeric porphyrinate,[Gd(TPP)acac-8H2O 3TCB] (TCB: 1,2,4-trichlorobenzene,acac: anion of acetylacetone),were determined by EXAFS method.The Gd atom is eight-coordinated to the four nitrogen atoms of a tetraphenylporphyrin ring,to the two oxygen atoms of one acetylacetonato anion and to two water molecules with Gd-N=0.232 nm,Gd-O=0.243 nm.     

Structural evidence for the radical scavenging mechanism of some aminothiol group of radioprotectants

Aminothiols constitute an important group of radioprotectants. The structures of a few well-known compounds belonging to the family of radioprotectants have been determined by single crystal x-ray diffraction methods. The sulphur and the amino nitrogen atoms are separated by two tetrahedral carbon atoms in these compounds. Thegauche conformation of the sulphur and the nitrogen atoms and the consequent non-bonded intramolecular S … N interaction observed in some of the crystal structures appear to favour the hypothesis that the protective mechanism of these compounds is by free radical scavenging.     

New Upper Rim Pyridine-Bridged Calix[4]arenes: Synthesis and Complexation Properties toward Neutral Molecules and Ammonium Ions in Organic Media

A new series of calix[4]arenes, diametrically bridged at the upper rim with pyridino systems, has been synthesized. The shape, rigidity, and chemical structure of the bridge influence the host-guest complexation properties of these systems in solution toward several neutral molecules having acidic C-H bonds. Additionally, selective complexation of methylammonium tosylate in comparison with other ammonium salts has been observed and the strength of this complexation enhanced by electron-donor ability of the p-substituent on the pyridine moiety of the calixarene host. X-ray crystal structures of endo complexes of host 5with malononitrile and nitromethane have been resolved, verifying specific C-H bonding with the hard oxygen and nitrogen atoms of the bridge and the soft aromatic ring of the calixarene.     

Structure and properties of cocrystals of trinitrotoluene and 2,4,6,8,10,12-hexanitro-2,4,6,8,10,12-hexaazaisowurtzitane

Crystals containing 2,4,6,8,10,12-hexanitro-2,4,6,8,10,12-hexaazaisowurtzitane and trinitrotoluene molecules in a 1: 1 ratio were obtained. The crystal structure was determined, and DSC thermograms, thermal stability, and the standard enthalpy of formation were investigated. An analysis of the crystal structure shows that interactions between the oxygen and nitrogen atoms of the nitro groups ON=O…NO₂ of adjacent molecules are among the structure-forming intermolecular interactions in the crystals of polynitroamine compounds.     

Proton-ionizable crown compounds. 11. Synthesis of macrocyclic ligands containing two sulfonamide groups and chloro substituents or pyridine subcyclic units and a preliminary study of cation transport by three of these ligands

Five new macrocyclic ligands each containing two sulfonamide groups have been prepared. Three of these compounds contain one or two chloro substituents and the other two have one or two pyridine subcyclic units. A seventeen-membered ring ligand (4) was found to be an excellent transport agent for all alkali metal cations in a water-methylene chloride-water bulk liquid membrane system when the pH of the source phase was 13 or higher. The chlorine-substituted analog (5) was a poor transport agent for the alkali metal cations possibly because the chlorine atom blocked entry to the macrocycle cavity. An open-chain analog containing two sulfonamide groups was particularly effective in transporting cesium ions.     

Solvent extraction studies of newbis-sulfonamide group-containing podands

A number of new open chainbis-sulfonamides with 2, 3 and 4 ether oxygen atoms were synthesized and their Na⁺ and K⁺ extractability was tested. For these types of ligands, both sulfonamide protons are ionized and two aqueous phase cations are complexed in the extraction. The ligand-cation complexes are composed of the ligand in a dianion form, a metal cation and tetramethylammonium hydroxide (TMA) as the co-cation in a ratio of 1 : 1 : 1 when TMA is present, or of ligand and metal cation in a ratio of 1 : 2 when only metal hydroxide is present in the aqueous solution. The influence of different substituents on the phenyl amide group on extractability and extraction selectivity was investigated. An X-ray crystal structure was obtained for the podand containing four ether oxygen atoms. The properties of open-chain ligands were compared with the analogous macrocyclic compounds.     

Molecular and crystal structure of 4,6,6-trimethyl-2-oxo-5,6-dihydro-2H-pyran-3-carbonitrile and 4,6,6-trimethyl-2-oxo-1,2,5,6-tetrahydropyridine-3-carbonitrile

Single crystals of 4,6,6-trimethyl-2-oxo-5,6-dihydro-2H-pyran-3-carbonitrile and 4,6,6-trimethyl-2-oxo-1,2,5,6-tetrahydropyridine-3-carbonitrile were prepared and submitted to X-ray diffraction analysis. Both compounds have a molecular structure belonging to the C₁ symmetry group. The heterocyclic rings are in a distorted envelope conformation. The crystals belong to the monoclinic system and each contain four molecules in the unit cell. In the crystal the pyridine derivative exists in the form of centrosymmetric dimers stabilized by intermolecular hydrogen bonds between the oxygen atoms of the carbonyl group and the hydrogen atom at the nitrogen atom of the ring. __________ Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 11, pp. 1620–1624, November, 2007.     

Improved intermolecular force field for molecules containing H,C, N,and O atoms,with application to nucleoside and peptide crystals

A new intermolecular force field for nitrogen atoms in organic molecules was derived from a training dataset of 76 observed azahydrocarbon crystal structures and 11 observed heats of sublimation. The previously published W99 force field for hydrogen, carbon, and oxygen was thus extended to include nitrogen atoms. Nitrogen atoms were divided into four classes: N(1) for triply bonded nitrogen, N(2) for nitrogen with no bonded hydrogen (except the triple bonded case), N(3) for nitrogen with one bonded hydrogen, and N(4) for nitrogen with two or more bonded hydrogens. H(4) designated hydrogen bonded to nitrogen. Wavefunctions of 6‐31g** quality were calculated for each molecule and the molecular electric potential (MEP) was modeled with net atomic and supplementary site charges. Lone pair electron charge sites were included for nitrogen atoms where appropriate, and methylene bisector charges were used for CH₂ and CH₃ groups when fitting the MEP. X? H bond distances were set to standard values for the wave function calculation and then foreshortened by 0.1 Å for the MEP and force field fitting. Using the force field optimized to the training dataset, each azahydrocarbon crystal structure was relaxed by intermolecular energy minimization. Predicted maximum changes in unit cell edge lengths for each crystal were 3% or less. The complete force field for H, C, N, and O atoms was tested by intermolecular energy relaxation of nucleoside and peptide molecular crystals. Even though these molecules were not included in any of the training datasets for the force field, agreement with their observed crystal structures was very good, with predicted unit cell edge shifts usually less than 2%. These tests included crystal structures of representatives of all eight common nucleosides found in DNA and RNA, 15 dipeptides, four tripeptides, two tetrapeptides, and a pentapeptide with two molecules in the asymmetric unit. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 1154–1166, 2001     

Synthesis,chemical characterization,X-ray crystal structure and magnetic properties of oxalato-bridged copper(II) binuclear complexes with 2,2′-bipyridine and diethylenetriamine as peripheral ligands

Two new μ-oxalato binuclear copper(II) complexes, [{Cu(NO₃)(H₂O)(bipy)}₂(ox)] (1) and [{Cu(dien)}₂(ox)](NO₃)₂ (2), with ox=oxalate, dien=diethylenetriamine and bipy=2,2′-bipyridine, have been synthesized and their crystal and molecular structures have been determined by single-crystal X-ray diffraction methods. The crystal structure of 1 consists of centrosymmetric neutral dimers where the copper atoms lie in a strongly elongated octahedral environment, surrounded by two nitrogen atoms of a bipy molecule and two oxygen atoms of the bridging oxalato group in the equatorial plane and oxygen atoms of water molecules and nitrate ions in the axial positions. Crystal structure of 2 is made up of non-coordinated nitrate anions and asymmetric binuclear cations in which copper atoms are in a distorted square–pyramidal coordination with three atoms of a diethylenetriamine ligand and an oxygen atom of the asymmetrically coordinated oxalato bridge building the basal plane and the other oxygen atom of the oxalato ligand filling the apical position. Both compounds have been also characterized by Fourier transform infrared (FT-IR) and electron spin resonance (ESR) spectroscopies, thermal analysis and variable temperature magnetic susceptibility measurements. The two compounds exhibit antiferromagnetic exchange with a singlet–triplet separation of −382 and −6.5 cm⁻¹ for 1 and 2, respectively. Magnetic and ESR results are discussed with respect to the crystal structure of the compounds.     

Cyclic triamines as potential high energy materials. Thermochemical properties of triaziridine and triazirine

As part of our survey of potential high-energy materials, we are considering molecules that have relatively high nitrogen content. Such molecules can decompose or combust to make very stable products. Here, we present calculated thermochemical properties of two molecules containing three nitrogen atoms in a ring: triaziridine and triazirine . Gaussian-2 and -3, CBS-APNO, and CBS-QB3 are the high-precision methods used in this study.     

Synthesis and structural investigation of internally coordinated alpha-amidoboronic acids

[structure: see text] Six new N-acyl-boroGly derivatives, along with their N-acyl-boroSar analogues, have been synthesized by modification of conventional procedures. Structural characterization of these alpha-amidoboronic acids was accomplished by extensive use of 11B and 1H NMR spectroscopy. These compounds were prepared to determine the extent of intramolecular B-O dative bond formation within the context of a five-membered (:O=C-N-C-B) ring motif. It is shown that the formation of such dative bonds depends on the nature of the substituents at both the acyl carbon and the nitrogen atoms. Computational evidence from second-order M?ller-Plesset perturbation theory is provided in support of these findings.     

Stabilization of cyclic and acyclic carbon(0) compounds by differential coordination of heterocyclic carbenes: a theoretical assessment

Recently, donor stabilized divalent carbon(0) compounds have undergone intense experimental and theoretical investigation due to their strong electron rich character. In this Article, some new cyclic and acyclic carbon(0) compounds stabilized by differential coordination modes (such as abnormal, remote and a mixture of both) of N-heterocyclic carbenes are studied theoretically. The cyclic carbon(0) compounds proposed in this study are unusual in the sense that they contain a five membered ring consisting of only carbon atoms with a central carbon atom in the formal oxidation state of zero. All these compounds are found to be very strong nucleophiles which might have wide implications in catalysis. Calculation of first proton affinities of these molecules reveal that they are better σ donors than the carbon(0) compound supported by normal N-heterocyclic carbenes. Quantum chemical calculations indicate that these molecules possess very high donor-acceptor L → C bond strengths and are thermodynamically stable. Calculation of the bond dissociation energies for the complexation of one and two molecules of AuCl indicates the possible isolation of their gem dimetalated derivatives.     

Synthesis and Spectroscopic Characterization of New Lead(II) Thiosaccharinates. Molecular Structure of Bis(thiosaccharinato)tetrakis(pyridine)dilead(II) and Thiosaccharinato‐bis(1,10‐phenantroline)lead(II) Thiosaccharinate

Four new lead(II) thiosaccharinate complexes: [Pb(tsac)₂H₂O] (1) (tsac: thiosaccharinate anion), [Pb₂(tsac)₄(py)₄] (2) (py: pyridine), [Pb(tsac)(o‐phen)₂](tsac)·CH₃CN (3) (o‐phen: 1,10‐phenantroline), and [Pb(tsac)₂(bipy)] (4) (bipy: 2,2′‐bipyridine) were prepared. The infrared and electronic spectra as well as the thermal analysis of all the compounds were recorded and discussed. The thiosaccharinate anion acts in three different coordination forms, one of then reported for the first time. The crystal structures of complexes 2 and 3 have been determined by single crystal X‐ray diffractometry. In complex 2 , two monomeric moieties are joined together forming a symmetric bis‐μ‐sulphur bridged dimer by interaction of two lead(II) atoms through the exocyclic sulphur atoms of two thiosaccharinate ligands. The seven‐fold coordination sphere of each lead atom is completed by two pyridine nitrogen atoms and by another sulfur and two nitrogen atoms of the thiosaccharinate anions. In complex 3 , the lead(II) atom is coordinated by four nitrogen atoms of two 1,10‐phenantroline molecules and by the sulfur and nitrogen atoms of one thiosaccharinate ion. The second anion has an electrostatic interaction with the nucleus.     

Quantum study of the ground state of a series of unsaturated boron–nitrogen compounds by the MNDO method. I. Geometries and stabilities

A MNDO study of molecular geometries, enthalpies, formation, atomization, bond separation, and hydrogenation of a series of unsaturated boron–nitrogen compounds, linear with two and three members and cyclic with three, four, five, and six members are presented. For all these molecules, MNDO calculations are in excellent agreement with available ab initio calculations or experimental data. The high rotational barrier in aminoborane H₂BNH₂, 30.6 kcal/mol, and the length of bond in iminoborane HBNH, 1.183 Å, imply strong double and triple BN bond character in these two molecules. In the odd membered heterocycles, examination of the molecular geometries and energies of equilibrium states shows that in all cases, the stability of the compounds grows with the number of boron atoms and decreases with that of the nitrogen atoms. Moreover, compared study of the two BN-fulvenes with their homologous hydrocarbon shows that only BN (BB)-fulvene has a polyenic structure similar to that of fulvene.     

Cyanato-Kupfer(II)-Komplexe mit organischen Liganden. XV. Verschiedene Koordinationen und Kristallformen der Cyanato-Kupfer(II)-Komplexe mit Urotropin

Cyanato-Copper(II) Complexes with Organic Ligands. XV. Various Coordinations and Crystal Forms of Cyanato-Copper(II) Complexes with Urotropine Four forms of the compound Cu(NCO)₂(urt) · 2 H₂O (α, β, γ, δ) and two forms of the compound Cu(NCO)₂(urt) (α, β) (urt = urotropine) were prepared and studied by X-ray powder technique, as well as by other physical methods. The obtained results indicate that in all the compounds Cu(II) atoms are bridged by bidentate urotropine molecules and bonded always with two nitrogen atoms of NCO groups. The γ- and δ-ihydrate show a pseudotetrahedral configuration, other compounds are five- or sixcoordinate owing to bridging function of NCO groups. Water in the dihydrates is hydrogen bonded in the crystal structure. The crystal structures of α- and β- like γ-and δ-ihydrates are very similar; the last two may be regarded as distortion isomers.